Gcaud1754.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1754.t1
Unique Name	Gcaud1754.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	340

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1193_length_12810_cov_3.289960	contig	NODE_1193_length_12810_cov_3.289960:7048..8067 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005704576.1
Preferred name	IAH1
PFAMs	Lipase_GDSL_2
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K05760
KEGG Pathway	ko04062,ko04370,ko04510,ko04670,ko04810,ko05100,ko05165,ko05203,ko05205,map04062,map04370,map04510,map04670,map04810,map05100,map05165,map05203,map05205
GOs	GO:0003674,GO:0003824,GO:0006082,GO:0006083,GO:0006084,GO:0006139,GO:0006163,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009117,GO:0009150,GO:0009259,GO:0009987,GO:0016787,GO:0016788,GO:0016999,GO:0017144,GO:0019637,GO:0019693,GO:0019752,GO:0032787,GO:0033865,GO:0033875,GO:0034032,GO:0034641,GO:0035383,GO:0043436,GO:0043603,GO:0044237,GO:0044238,GO:0044281,GO:0046483,GO:0051186,GO:0055086,GO:0071704,GO:0072521,GO:1901135,GO:1901360,GO:1901564
Evalue	1.51e-39
EggNOG OGs	COG0214@1\|root,KOG3035@2759\|Eukaryota
Description	lipid catabolic process
COG category	H
BRITE	ko00000,ko00001

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1754	Gcaud1754	Gracilaria caudata M_176_S67 male	gene	NODE_1193_length_12810_cov_3.289960 7048..8067 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1754.t1.start1	Gcaud1754.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1193_length_12810_cov_3.289960 7048..7050 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1754.t1.CDS1	Gcaud1754.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1193_length_12810_cov_3.289960 7048..8067 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1754.t1.exon1	Gcaud1754.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1193_length_12810_cov_3.289960 7048..8067 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1754.t1.stop1	Gcaud1754.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1193_length_12810_cov_3.289960 8065..8067 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1754.t1	Gcaud1754.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1193_length_12810_cov_3.289960 7048..8067 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1193_length_12810_cov_3.289960:7048..8067+
coding sequence from alignment at NODE_1193_length_12810_cov_3.289960:7048..8067+

mRNA sequence

>Gcaud1754.t1 ID=Gcaud1754.t1|Name=Gcaud1754.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=340bp
MMSATPEREALSQPPPPPQPPLSLSDPPFQPPPATPPLPQIVHGIDPGDD
SADESQSSLLRDSMADVFSTLSARVSRAVRLNKSPSPLSRTKGEHTFSQL
PSVLLFGDSITEQSVLSSHQNAPGWSALLREAYSARVEVFVRGFSGYNTR
WALHVFPRVIEPFRNVDTLALQTVVIFFGANDATTPTCAQHVPLDSYAHN
LAALVDTVKTLPSKPVPVLVTPPALGRSRHAVDDNRRVELTAKYAEACVE
TGRRLGVPVVDLHAAMVGRACDDEGVDVFLADGLHLAPEGNRLVYDLLAE
VFAECVPEVCPRNANPSYPHWREIDPDHPAEILGDTPLM*

spliced messenger RNA

>Gcaud1754.t1 ID=Gcaud1754.t1|Name=Gcaud1754.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1020bp|location=Sequence derived from alignment at NODE_1193_length_12810_cov_3.289960:7048..8067+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGTCCGCCACGCCGGAGAGGGAAGCGCTGTCTCAGCCCCCGCCGCC
ACCACAGCCGCCTCTGTCGCTGTCGGACCCGCCGTTCCAACCTCCGCCCG
CCACGCCGCCATTACCGCAAATCGTGCACGGCATCGACCCGGGCGACGAT
TCTGCCGACGAATCGCAGTCGTCGCTGCTGCGAGACTCCATGGCAGACGT
GTTCTCCACCCTGTCCGCGCGCGTGTCGCGAGCTGTGCGTCTCAACAAGT
CGCCGTCCCCTCTTTCCAGGACCAAGGGCGAACACACCTTCTCACAGCTG
CCATCAGTGCTGCTGTTCGGCGACAGCATCACCGAGCAATCCGTGCTCAG
CTCACATCAAAACGCGCCCGGCTGGAGCGCGCTACTTCGCGAAGCGTACA
GCGCGCGAGTGGAGGTGTTTGTACGAGGCTTCTCCGGCTACAACACGCGC
TGGGCTCTTCACGTGTTTCCGCGAGTGATCGAACCTTTTCGCAACGTCGA
CACGCTCGCGCTTCAGACGGTGGTCATCTTCTTTGGCGCGAACGATGCCA
CAACGCCCACATGCGCGCAGCACGTGCCGCTGGACTCGTACGCGCACAAC
CTTGCGGCGCTGGTTGACACCGTCAAAACGCTGCCGTCCAAAccggtgcc
ggtgcttgtgacgccgccggcgctcggAAGGTCGCGTCATGCCGTCGATG
ACAACCGGCGCGTGGAGCTCACGGCCAAGTACGCTGAGGCGTGTGTGGAG
ACAGGTCGACGGCTGGGGGTGCCAGTGGTGGACCTCCATGCCGCCATGGT
GGGGCGTGCGTGCGACGATGAGGGCGTTGACGTGTTCCTGGCGGATGGCT
TGCATCTTGCGCCGGAGGGAAACCGTCTGGTGTACGATCTTCTGGCCGAG
GTGTTTGCGGAGTGTGTGCCGGAAGTATGTCCAAGAAATGCCAACCCATC
GTATCCGCACTGGAGGGAGATTGACCCTGACCACCCCGCCGAAATTCTAG
GCGATACTCCCCTGATGTAG

protein sequence of Gcaud1754.t1

>Gcaud1754.t1 ID=Gcaud1754.t1|Name=Gcaud1754.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=340bp
MMSATPEREALSQPPPPPQPPLSLSDPPFQPPPATPPLPQIVHGIDPGDD
SADESQSSLLRDSMADVFSTLSARVSRAVRLNKSPSPLSRTKGEHTFSQL
PSVLLFGDSITEQSVLSSHQNAPGWSALLREAYSARVEVFVRGFSGYNTR
WALHVFPRVIEPFRNVDTLALQTVVIFFGANDATTPTCAQHVPLDSYAHN
LAALVDTVKTLPSKPVPVLVTPPALGRSRHAVDDNRRVELTAKYAEACVE
TGRRLGVPVVDLHAAMVGRACDDEGVDVFLADGLHLAPEGNRLVYDLLAE
VFAECVPEVCPRNANPSYPHWREIDPDHPAEILGDTPLM*

mRNA from alignment at NODE_1193_length_12810_cov_3.289960:7048..8067+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1754.t1 ID=Gcaud1754.t1|Name=Gcaud1754.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1020bp|location=Sequence derived from alignment at NODE_1193_length_12810_cov_3.289960:7048..8067+ (Gracilaria caudata M_176_S67 male)
ATGATGTCCGCCACGCCGGAGAGGGAAGCGCTGTCTCAGCCCCCGCCGCC
ACCACAGCCGCCTCTGTCGCTGTCGGACCCGCCGTTCCAACCTCCGCCCG
CCACGCCGCCATTACCGCAAATCGTGCACGGCATCGACCCGGGCGACGAT
TCTGCCGACGAATCGCAGTCGTCGCTGCTGCGAGACTCCATGGCAGACGT
GTTCTCCACCCTGTCCGCGCGCGTGTCGCGAGCTGTGCGTCTCAACAAGT
CGCCGTCCCCTCTTTCCAGGACCAAGGGCGAACACACCTTCTCACAGCTG
CCATCAGTGCTGCTGTTCGGCGACAGCATCACCGAGCAATCCGTGCTCAG
CTCACATCAAAACGCGCCCGGCTGGAGCGCGCTACTTCGCGAAGCGTACA
GCGCGCGAGTGGAGGTGTTTGTACGAGGCTTCTCCGGCTACAACACGCGC
TGGGCTCTTCACGTGTTTCCGCGAGTGATCGAACCTTTTCGCAACGTCGA
CACGCTCGCGCTTCAGACGGTGGTCATCTTCTTTGGCGCGAACGATGCCA
CAACGCCCACATGCGCGCAGCACGTGCCGCTGGACTCGTACGCGCACAAC
CTTGCGGCGCTGGTTGACACCGTCAAAACGCTGCCGTCCAAAccggtgcc
ggtgcttgtgacgccgccggcgctcggAAGGTCGCGTCATGCCGTCGATG
ACAACCGGCGCGTGGAGCTCACGGCCAAGTACGCTGAGGCGTGTGTGGAG
ACAGGTCGACGGCTGGGGGTGCCAGTGGTGGACCTCCATGCCGCCATGGT
GGGGCGTGCGTGCGACGATGAGGGCGTTGACGTGTTCCTGGCGGATGGCT
TGCATCTTGCGCCGGAGGGAAACCGTCTGGTGTACGATCTTCTGGCCGAG
GTGTTTGCGGAGTGTGTGCCGGAAGTATGTCCAAGAAATGCCAACCCATC
GTATCCGCACTGGAGGGAGATTGACCCTGACCACCCCGCCGAAATTCTAG
GCGATACTCCCCTGATGTAG

Coding sequence (CDS) from alignment at NODE_1193_length_12810_cov_3.289960:7048..8067+

>Gcaud1754.t1 ID=Gcaud1754.t1|Name=Gcaud1754.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1020bp|location=Sequence derived from alignment at NODE_1193_length_12810_cov_3.289960:7048..8067+ (Gracilaria caudata M_176_S67 male)
ATGATGTCCGCCACGCCGGAGAGGGAAGCGCTGTCTCAGCCCCCGCCGCC
ACCACAGCCGCCTCTGTCGCTGTCGGACCCGCCGTTCCAACCTCCGCCCG
CCACGCCGCCATTACCGCAAATCGTGCACGGCATCGACCCGGGCGACGAT
TCTGCCGACGAATCGCAGTCGTCGCTGCTGCGAGACTCCATGGCAGACGT
GTTCTCCACCCTGTCCGCGCGCGTGTCGCGAGCTGTGCGTCTCAACAAGT
CGCCGTCCCCTCTTTCCAGGACCAAGGGCGAACACACCTTCTCACAGCTG
CCATCAGTGCTGCTGTTCGGCGACAGCATCACCGAGCAATCCGTGCTCAG
CTCACATCAAAACGCGCCCGGCTGGAGCGCGCTACTTCGCGAAGCGTACA
GCGCGCGAGTGGAGGTGTTTGTACGAGGCTTCTCCGGCTACAACACGCGC
TGGGCTCTTCACGTGTTTCCGCGAGTGATCGAACCTTTTCGCAACGTCGA
CACGCTCGCGCTTCAGACGGTGGTCATCTTCTTTGGCGCGAACGATGCCA
CAACGCCCACATGCGCGCAGCACGTGCCGCTGGACTCGTACGCGCACAAC
CTTGCGGCGCTGGTTGACACCGTCAAAACGCTGCCGTCCAAAccggtgcc
ggtgcttgtgacgccgccggcgctcggAAGGTCGCGTCATGCCGTCGATG
ACAACCGGCGCGTGGAGCTCACGGCCAAGTACGCTGAGGCGTGTGTGGAG
ACAGGTCGACGGCTGGGGGTGCCAGTGGTGGACCTCCATGCCGCCATGGT
GGGGCGTGCGTGCGACGATGAGGGCGTTGACGTGTTCCTGGCGGATGGCT
TGCATCTTGCGCCGGAGGGAAACCGTCTGGTGTACGATCTTCTGGCCGAG
GTGTTTGCGGAGTGTGTGCCGGAAGTATGTCCAAGAAATGCCAACCCATC
GTATCCGCACTGGAGGGAGATTGACCCTGACCACCCCGCCGAAATTCTAG
GCGATACTCCCCTGATGTAG