Gcaud2833.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2833.t1
Unique NameGcaud2833.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length106
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_7_length_102599_cov_4.541909contigNODE_7_length_102599_cov_4.541909:26614..26931 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2833Gcaud2833Gracilaria caudata M_176_S67 malegeneNODE_7_length_102599_cov_4.541909 26614..26931 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2833.t1.stop1Gcaud2833.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_7_length_102599_cov_4.541909 26614..26616 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2833.t1.CDS1Gcaud2833.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_7_length_102599_cov_4.541909 26614..26931 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2833.t1.exon1Gcaud2833.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_7_length_102599_cov_4.541909 26614..26931 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2833.t1.start1Gcaud2833.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_7_length_102599_cov_4.541909 26929..26931 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2833.t1Gcaud2833.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_7_length_102599_cov_4.541909 26614..26931 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2833.t1 ID=Gcaud2833.t1|Name=Gcaud2833.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=106bp
MMASKKKIALAIGGAELGNVEDGVNEAQVDKDGMIGGKSVTQVLRAKQVW
GDAANSELNDDGVCNRCLRNGYVSCSACAGDGLAGERTPLGHTSSKRKLP
YKVRK*
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spliced messenger RNA

>Gcaud2833.t1 ID=Gcaud2833.t1|Name=Gcaud2833.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=318bp|location=Sequence derived from alignment at NODE_7_length_102599_cov_4.541909:26614..26931- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGGCGAGCAAGAAGAAGATTGCGCTCGCGATCGGCGGCGCGGAGTT
GGGTAACGTGGAGGATGGTGTGAACGAGGCGCAAGTGGATAAGGACGGCA
TGATTGGGGGCAAGAGTGTCACTCAGGTGCTCAGGGCGAAGCAGGTGTGG
GGCGATGCGGCCAATTCTGAGTTGAACGACGACGGCGTGTGTAATCGATG
CCTTCGCAATGGCTACGTCAGTTGTTCGGCGTGCGCTGGGGACGGCCTAG
CTGGCGAACGCACTCCGCTAGGACACACGAGTTCGAAGAGAAAGCTTCCG
TACAAAGTGCGCAAATAG
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protein sequence of Gcaud2833.t1

>Gcaud2833.t1 ID=Gcaud2833.t1|Name=Gcaud2833.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=106bp
MMASKKKIALAIGGAELGNVEDGVNEAQVDKDGMIGGKSVTQVLRAKQVW
GDAANSELNDDGVCNRCLRNGYVSCSACAGDGLAGERTPLGHTSSKRKLP
YKVRK*
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mRNA from alignment at NODE_7_length_102599_cov_4.541909:26614..26931-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2833.t1 ID=Gcaud2833.t1|Name=Gcaud2833.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=318bp|location=Sequence derived from alignment at NODE_7_length_102599_cov_4.541909:26614..26931- (Gracilaria caudata M_176_S67 male)
ATGATGGCGAGCAAGAAGAAGATTGCGCTCGCGATCGGCGGCGCGGAGTT
GGGTAACGTGGAGGATGGTGTGAACGAGGCGCAAGTGGATAAGGACGGCA
TGATTGGGGGCAAGAGTGTCACTCAGGTGCTCAGGGCGAAGCAGGTGTGG
GGCGATGCGGCCAATTCTGAGTTGAACGACGACGGCGTGTGTAATCGATG
CCTTCGCAATGGCTACGTCAGTTGTTCGGCGTGCGCTGGGGACGGCCTAG
CTGGCGAACGCACTCCGCTAGGACACACGAGTTCGAAGAGAAAGCTTCCG
TACAAAGTGCGCAAATAG
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Coding sequence (CDS) from alignment at NODE_7_length_102599_cov_4.541909:26614..26931-

>Gcaud2833.t1 ID=Gcaud2833.t1|Name=Gcaud2833.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=318bp|location=Sequence derived from alignment at NODE_7_length_102599_cov_4.541909:26614..26931- (Gracilaria caudata M_176_S67 male)
ATGATGGCGAGCAAGAAGAAGATTGCGCTCGCGATCGGCGGCGCGGAGTT
GGGTAACGTGGAGGATGGTGTGAACGAGGCGCAAGTGGATAAGGACGGCA
TGATTGGGGGCAAGAGTGTCACTCAGGTGCTCAGGGCGAAGCAGGTGTGG
GGCGATGCGGCCAATTCTGAGTTGAACGACGACGGCGTGTGTAATCGATG
CCTTCGCAATGGCTACGTCAGTTGTTCGGCGTGCGCTGGGGACGGCCTAG
CTGGCGAACGCACTCCGCTAGGACACACGAGTTCGAAGAGAAAGCTTCCG
TACAAAGTGCGCAAATAG
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