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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 4537.OPUNC02G29970.1 |
| PFAMs | Cullin,Cullin_Nedd8 |
| Max annot lvl | 35493|Streptophyta |
| KEGG ko | ko:K03869 |
| KEGG Pathway | ko04120,ko04340,ko04341,map04120,map04340,map04341 |
| KEGG Module | M00384 |
| GOs | GO:0000151,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0009314,GO:0009416,GO:0009628,GO:0009639,GO:0009909,GO:0009911,GO:0019899,GO:0031461,GO:0031625,GO:0032991,GO:0044389,GO:0044424,GO:0044444,GO:0044464,GO:0048518,GO:0048580,GO:0048582,GO:0048831,GO:0050789,GO:0050793,GO:0050896,GO:0051094,GO:0051239,GO:0051240,GO:0065007,GO:1902494,GO:1990234,GO:2000026,GO:2000241,GO:2000243 |
| Evalue | 1.03e-212 |
| EggNOG OGs | COG5647@1|root,KOG2166@2759|Eukaryota,37I6E@33090|Viridiplantae,3GEGV@35493|Streptophyta,3KRMK@4447|Liliopsida,3I2DA@38820|Poales |
| Description | Belongs to the cullin family |
| COG category | D |
| BRITE | ko00000,ko00001,ko00002,ko03400,ko04121 |
Relationships
This mRNA is a part of the following gene feature(s):
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud2829.t1.start1 | Gcaud2829.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_7_length_102599_cov_4.541909 17741..17743 + |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud2829.t1.stop1 | Gcaud2829.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_7_length_102599_cov_4.541909 20093..20095 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud2829.t1 ID=Gcaud2829.t1|Name=Gcaud2829.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=785bp MARRNSGRFVISCFPQPVQLDPHFAEKTWQTLEHAINEINKRNISNLSFE QLYRYSYNMVLHKHGDYLYDGLTRLQTDHLIAVADLIKRTEPPVFLSEIK RQWTWFEISLSHVREVLMYMDRHYVKPKKKKNVHELGLALFRDGVVRHPS ILPRLSETLLASIDKERNGEPIDYLLVKSITRMLAELGVDDDGKSVYETV FEDGFLERTRQFYAREATLYLSETTCSEYLRKASQRINQERLRVECYLEP DTAPKVRRVAETELISKYMDKLINMENSGLIWMLRNDKIEDLKLMYTLFK GIKHGEEEVRHNLKEEVLERGTKIIQNTENVRDPIALVNAILMLREKYDN IVNTAFTTPAEKAPQASNPAGSAMTARYFLEQLNNGSSSDAVNGAQTRHE SVPDKRFVSAVNDAFERFVNGFSRSAEYLSLYVDKLLRKDFKGLTDDEID AKLDAVMALFRYLSDKDVFERYYKQHLQKRLLYSRSTSSDAERSFITKMK TDCGYLYTSKMEIMFNDMKTSDESTSQFRDKVAQESIEMRGIDLKVFVLT TMSWPVPQTPAVNLPEDAVHCASKFEEFYYQKHNGRRLTWQQSLGTAEIR ARFGTRVYELYSVSAYAMCILLLFNSNDSLTYKEIADATLIPESELVRHL QSLSLAKHKVLKKEPREKEVKPNDRFMFNSDFQSRSRRIKMQVVTAQKEN ETERNHTRCRINADRGPVIDTVVVRIMKHRKTLEHNRLIAEVTRELESKF EPNTQEIKKRIESLVEREYLERQKDKRQVYQYVA* back to topspliced messenger RNA >Gcaud2829.t1 ID=Gcaud2829.t1|Name=Gcaud2829.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2355bp|location=Sequence derived from alignment at NODE_7_length_102599_cov_4.541909:17741..20095+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
ATGGCACGTCGTAACTCTGGACGTTTTGTCATCTCTTGTTTTCCGCAGCC TGTTCAACTTGACCCCCACTTTGCGGAGAAGACATGGCAAACGCTTGAGC ATGCCATCAATGAGATTAACAAACGCAACATTTCCAACCTTTCGTTTGAG CAGCTTTATCGCTATTCGTACAACATGGTACTTCACAAGCACGGCGACTA TCTGTACGATGGTCTTACTCGCCTGCAAACTGATCATCTCATCGCAGTTG CAGATCTCATCAAGCGCACCGAACCCCCCGTCTTTCTGTCAGAGATAAAG CGCCAGTGGACCTGGTTTGAAATCAGTCTCTCACATGTGCGCGAGGTTTT GATGTACATGGATCGTCACTATGTCAAACCGAAGAAGAAGAAGAACGTAC ATGAGCTAGGGCTTGCCCTCTTCCGCGACGGAGTCGTCCGTCACCCGTCC ATTCTTCCACGTTTATCGGAGACTCTCTTGGCGAGCATCGATAAGGAGAG AAATGGAGAACCTATTGATTACTTGCTTGTCAAGAGCATTACAAGAATGC TGGCCGAACTGGGCGTAGACGACGACGGCAAATCTGTTTACGAGACCGTT TTTGAAGATGGCTTTCTTGAGCGCACACGCCAGTTTTACGCCCGAGAAGC CACTCTATATCTCTCGGAAACAACATGCTCTGAATATTTGCGAAAGGCTA GTCAACGCATCAATCAAGAGCGTCTGAGAGTTGAATGCTATTTGGAGCCC GACACCGCACCAAAAGTACGTCGCGTTGCAGAGACCGAACTCATATCCAA GTACATGGACAAACTTATCAACATGGAGAACTCTGGTCTTATCTGGATGT TGCGTAACGACAAAATTGAGGACCTTAAGCTCATGTACACTCTTTTCAAG GGCATTAAACACGGTGAAGAGGAGGTCCGCCATAACCTCAAAGAAGAAGT CCTAGAAAGAGGAACTAAAATTATCCAGAATACCGAAAACGTTCGCGATC CTATTGCTCTGGTCAACGCTATCCTCATGTTAAGGGAAAAATACGACAAC ATTGTCAACACTGCGTTTACGACTCCGGCCGAGAAGGCTCCGCAAGCCTC AAACCCTGCAGGTTCAGCCATGACTGCTAGATATTTCTTAGAACAGCTGA ACAATGGGTCCAGCAGCGATGCAGTGAATGGCGCCCAAACACGGCATGAA AGCGTTCCTGATAAGCGCTTCGTTTCTGCGGTCAATGATGCATTTGAACG GTTTGTAAACGGCTTCAGCCGATCTGCCGAATACCTTTCGCTCTATGTAG ACAAACTCTTGCGGAAAGATTTCAAGGGACTAACTGATGATGAGATCGAT GCCAAACTAGATGCTGTCATGGCACTGTTCCGGTATCTAAGTGACAAGGA CGTTTTTGAACGATACTACAAGCAGCATTTACAAAAGCGACTGCTTTATT CCCGATCTACCTCATCTGATGCGGAACGGAGTTTCATCACCAAGATGAAG ACCGATTGCGGGTACTTGTACACTTCGAAAATGGAAATCATGTTCAACGA TATGAAAACTAGTGACGAAAGCACATCACAGTTTAGGGACAAAGTGGCTC AGGAATCTATTGAAATGCGAGGAATAGATTTGAAGGTGTTTGTGCTCACC ACCATGAGTTGGCCGGTGCCTCAAACACCAGCTGTGAATCTCCCAGAAGA TGCTGTACACTGCGCTTCTAAGTTTGAGGAATTCTATTACCAAAAGCATA ACGGACGACGACTGACATGGCAGCAATCTCTCGGAACGGCAGAGATACGT GCTAGGTTTGGCACCCGTGTATATGAGCTCTATTCGGTGTCGGCCTATGC TATGTGCATCCTTTTGTTATTTAACTCGAATGACAGTCTTACATACAAAG AAATCGCTGACGCTACCCTCATCCCTGAATCAGAGCTTGTGAGACACTTA CAAAGTCTTTCTCTGGCGAAGCACAAGGTCTTGAAGAAAGAACCTCGGGA AAAGGAAGTGAAACCAAACGATAGATTCATGTTCAACTCTGATTTTCAAA GTCGAAGCAGAAGAATCAAGATGCAAGTCGTCACAGCTCAGAAAGAGAAC GAAACTGAGAGAAATCATACGCGCTGTCGCATCAATGCCGACCGCGGTCC TGTGATAGATACAGTTGTCGTGCGCATCATGAAGCATCGTAAGACTTTGG AGCACAACAGACTTATAGCTGAAGTCACCCGAGAATTAGAATCAAAGTTC GAGCCAAACACTCAAGAGATCAAGAAGAGAATTGAAAGTCTTGTAGAGAG AGAGTACTTGGAGAGACAAAAGGACAAGAGGCAGGTGTATCAGTATGTGG CGTAG back to topprotein sequence of Gcaud2829.t1 >Gcaud2829.t1 ID=Gcaud2829.t1|Name=Gcaud2829.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=785bp
MARRNSGRFVISCFPQPVQLDPHFAEKTWQTLEHAINEINKRNISNLSFE QLYRYSYNMVLHKHGDYLYDGLTRLQTDHLIAVADLIKRTEPPVFLSEIK RQWTWFEISLSHVREVLMYMDRHYVKPKKKKNVHELGLALFRDGVVRHPS ILPRLSETLLASIDKERNGEPIDYLLVKSITRMLAELGVDDDGKSVYETV FEDGFLERTRQFYAREATLYLSETTCSEYLRKASQRINQERLRVECYLEP DTAPKVRRVAETELISKYMDKLINMENSGLIWMLRNDKIEDLKLMYTLFK GIKHGEEEVRHNLKEEVLERGTKIIQNTENVRDPIALVNAILMLREKYDN IVNTAFTTPAEKAPQASNPAGSAMTARYFLEQLNNGSSSDAVNGAQTRHE SVPDKRFVSAVNDAFERFVNGFSRSAEYLSLYVDKLLRKDFKGLTDDEID AKLDAVMALFRYLSDKDVFERYYKQHLQKRLLYSRSTSSDAERSFITKMK TDCGYLYTSKMEIMFNDMKTSDESTSQFRDKVAQESIEMRGIDLKVFVLT TMSWPVPQTPAVNLPEDAVHCASKFEEFYYQKHNGRRLTWQQSLGTAEIR ARFGTRVYELYSVSAYAMCILLLFNSNDSLTYKEIADATLIPESELVRHL QSLSLAKHKVLKKEPREKEVKPNDRFMFNSDFQSRSRRIKMQVVTAQKEN ETERNHTRCRINADRGPVIDTVVVRIMKHRKTLEHNRLIAEVTRELESKF EPNTQEIKKRIESLVEREYLERQKDKRQVYQYVA* back to topmRNA from alignment at NODE_7_length_102599_cov_4.541909:17741..20095+ Legend: start_codonpolypeptideCDSexonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud2829.t1 ID=Gcaud2829.t1|Name=Gcaud2829.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2355bp|location=Sequence derived from alignment at NODE_7_length_102599_cov_4.541909:17741..20095+ (Gracilaria caudata M_176_S67 male) ATGGCACGTCGTAACTCTGGACGTTTTGTCATCTCTTGTTTTCCGCAGCC
TGTTCAACTTGACCCCCACTTTGCGGAGAAGACATGGCAAACGCTTGAGC
ATGCCATCAATGAGATTAACAAACGCAACATTTCCAACCTTTCGTTTGAG
CAGCTTTATCGCTATTCGTACAACATGGTACTTCACAAGCACGGCGACTA
TCTGTACGATGGTCTTACTCGCCTGCAAACTGATCATCTCATCGCAGTTG
CAGATCTCATCAAGCGCACCGAACCCCCCGTCTTTCTGTCAGAGATAAAG
CGCCAGTGGACCTGGTTTGAAATCAGTCTCTCACATGTGCGCGAGGTTTT
GATGTACATGGATCGTCACTATGTCAAACCGAAGAAGAAGAAGAACGTAC
ATGAGCTAGGGCTTGCCCTCTTCCGCGACGGAGTCGTCCGTCACCCGTCC
ATTCTTCCACGTTTATCGGAGACTCTCTTGGCGAGCATCGATAAGGAGAG
AAATGGAGAACCTATTGATTACTTGCTTGTCAAGAGCATTACAAGAATGC
TGGCCGAACTGGGCGTAGACGACGACGGCAAATCTGTTTACGAGACCGTT
TTTGAAGATGGCTTTCTTGAGCGCACACGCCAGTTTTACGCCCGAGAAGC
CACTCTATATCTCTCGGAAACAACATGCTCTGAATATTTGCGAAAGGCTA
GTCAACGCATCAATCAAGAGCGTCTGAGAGTTGAATGCTATTTGGAGCCC
GACACCGCACCAAAAGTACGTCGCGTTGCAGAGACCGAACTCATATCCAA
GTACATGGACAAACTTATCAACATGGAGAACTCTGGTCTTATCTGGATGT
TGCGTAACGACAAAATTGAGGACCTTAAGCTCATGTACACTCTTTTCAAG
GGCATTAAACACGGTGAAGAGGAGGTCCGCCATAACCTCAAAGAAGAAGT
CCTAGAAAGAGGAACTAAAATTATCCAGAATACCGAAAACGTTCGCGATC
CTATTGCTCTGGTCAACGCTATCCTCATGTTAAGGGAAAAATACGACAAC
ATTGTCAACACTGCGTTTACGACTCCGGCCGAGAAGGCTCCGCAAGCCTC
AAACCCTGCAGGTTCAGCCATGACTGCTAGATATTTCTTAGAACAGCTGA
ACAATGGGTCCAGCAGCGATGCAGTGAATGGCGCCCAAACACGGCATGAA
AGCGTTCCTGATAAGCGCTTCGTTTCTGCGGTCAATGATGCATTTGAACG
GTTTGTAAACGGCTTCAGCCGATCTGCCGAATACCTTTCGCTCTATGTAG
ACAAACTCTTGCGGAAAGATTTCAAGGGACTAACTGATGATGAGATCGAT
GCCAAACTAGATGCTGTCATGGCACTGTTCCGGTATCTAAGTGACAAGGA
CGTTTTTGAACGATACTACAAGCAGCATTTACAAAAGCGACTGCTTTATT
CCCGATCTACCTCATCTGATGCGGAACGGAGTTTCATCACCAAGATGAAG
ACCGATTGCGGGTACTTGTACACTTCGAAAATGGAAATCATGTTCAACGA
TATGAAAACTAGTGACGAAAGCACATCACAGTTTAGGGACAAAGTGGCTC
AGGAATCTATTGAAATGCGAGGAATAGATTTGAAGGTGTTTGTGCTCACC
ACCATGAGTTGGCCGGTGCCTCAAACACCAGCTGTGAATCTCCCAGAAGA
TGCTGTACACTGCGCTTCTAAGTTTGAGGAATTCTATTACCAAAAGCATA
ACGGACGACGACTGACATGGCAGCAATCTCTCGGAACGGCAGAGATACGT
GCTAGGTTTGGCACCCGTGTATATGAGCTCTATTCGGTGTCGGCCTATGC
TATGTGCATCCTTTTGTTATTTAACTCGAATGACAGTCTTACATACAAAG
AAATCGCTGACGCTACCCTCATCCCTGAATCAGAGCTTGTGAGACACTTA
CAAAGTCTTTCTCTGGCGAAGCACAAGGTCTTGAAGAAAGAACCTCGGGA
AAAGGAAGTGAAACCAAACGATAGATTCATGTTCAACTCTGATTTTCAAA
GTCGAAGCAGAAGAATCAAGATGCAAGTCGTCACAGCTCAGAAAGAGAAC
GAAACTGAGAGAAATCATACGCGCTGTCGCATCAATGCCGACCGCGGTCC
TGTGATAGATACAGTTGTCGTGCGCATCATGAAGCATCGTAAGACTTTGG
AGCACAACAGACTTATAGCTGAAGTCACCCGAGAATTAGAATCAAAGTTC
GAGCCAAACACTCAAGAGATCAAGAAGAGAATTGAAAGTCTTGTAGAGAG
AGAGTACTTGGAGAGACAAAAGGACAAGAGGCAGGTGTATCAGTATGTGG
CGTAG back to topCoding sequence (CDS) from alignment at NODE_7_length_102599_cov_4.541909:17741..20095+ >Gcaud2829.t1 ID=Gcaud2829.t1|Name=Gcaud2829.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2355bp|location=Sequence derived from alignment at NODE_7_length_102599_cov_4.541909:17741..20095+ (Gracilaria caudata M_176_S67 male) ATGGCACGTCGTAACTCTGGACGTTTTGTCATCTCTTGTTTTCCGCAGCC TGTTCAACTTGACCCCCACTTTGCGGAGAAGACATGGCAAACGCTTGAGC ATGCCATCAATGAGATTAACAAACGCAACATTTCCAACCTTTCGTTTGAG CAGCTTTATCGCTATTCGTACAACATGGTACTTCACAAGCACGGCGACTA TCTGTACGATGGTCTTACTCGCCTGCAAACTGATCATCTCATCGCAGTTG CAGATCTCATCAAGCGCACCGAACCCCCCGTCTTTCTGTCAGAGATAAAG CGCCAGTGGACCTGGTTTGAAATCAGTCTCTCACATGTGCGCGAGGTTTT GATGTACATGGATCGTCACTATGTCAAACCGAAGAAGAAGAAGAACGTAC ATGAGCTAGGGCTTGCCCTCTTCCGCGACGGAGTCGTCCGTCACCCGTCC ATTCTTCCACGTTTATCGGAGACTCTCTTGGCGAGCATCGATAAGGAGAG AAATGGAGAACCTATTGATTACTTGCTTGTCAAGAGCATTACAAGAATGC TGGCCGAACTGGGCGTAGACGACGACGGCAAATCTGTTTACGAGACCGTT TTTGAAGATGGCTTTCTTGAGCGCACACGCCAGTTTTACGCCCGAGAAGC CACTCTATATCTCTCGGAAACAACATGCTCTGAATATTTGCGAAAGGCTA GTCAACGCATCAATCAAGAGCGTCTGAGAGTTGAATGCTATTTGGAGCCC GACACCGCACCAAAAGTACGTCGCGTTGCAGAGACCGAACTCATATCCAA GTACATGGACAAACTTATCAACATGGAGAACTCTGGTCTTATCTGGATGT TGCGTAACGACAAAATTGAGGACCTTAAGCTCATGTACACTCTTTTCAAG GGCATTAAACACGGTGAAGAGGAGGTCCGCCATAACCTCAAAGAAGAAGT CCTAGAAAGAGGAACTAAAATTATCCAGAATACCGAAAACGTTCGCGATC CTATTGCTCTGGTCAACGCTATCCTCATGTTAAGGGAAAAATACGACAAC ATTGTCAACACTGCGTTTACGACTCCGGCCGAGAAGGCTCCGCAAGCCTC AAACCCTGCAGGTTCAGCCATGACTGCTAGATATTTCTTAGAACAGCTGA ACAATGGGTCCAGCAGCGATGCAGTGAATGGCGCCCAAACACGGCATGAA AGCGTTCCTGATAAGCGCTTCGTTTCTGCGGTCAATGATGCATTTGAACG GTTTGTAAACGGCTTCAGCCGATCTGCCGAATACCTTTCGCTCTATGTAG ACAAACTCTTGCGGAAAGATTTCAAGGGACTAACTGATGATGAGATCGAT GCCAAACTAGATGCTGTCATGGCACTGTTCCGGTATCTAAGTGACAAGGA CGTTTTTGAACGATACTACAAGCAGCATTTACAAAAGCGACTGCTTTATT CCCGATCTACCTCATCTGATGCGGAACGGAGTTTCATCACCAAGATGAAG ACCGATTGCGGGTACTTGTACACTTCGAAAATGGAAATCATGTTCAACGA TATGAAAACTAGTGACGAAAGCACATCACAGTTTAGGGACAAAGTGGCTC AGGAATCTATTGAAATGCGAGGAATAGATTTGAAGGTGTTTGTGCTCACC ACCATGAGTTGGCCGGTGCCTCAAACACCAGCTGTGAATCTCCCAGAAGA TGCTGTACACTGCGCTTCTAAGTTTGAGGAATTCTATTACCAAAAGCATA ACGGACGACGACTGACATGGCAGCAATCTCTCGGAACGGCAGAGATACGT GCTAGGTTTGGCACCCGTGTATATGAGCTCTATTCGGTGTCGGCCTATGC TATGTGCATCCTTTTGTTATTTAACTCGAATGACAGTCTTACATACAAAG AAATCGCTGACGCTACCCTCATCCCTGAATCAGAGCTTGTGAGACACTTA CAAAGTCTTTCTCTGGCGAAGCACAAGGTCTTGAAGAAAGAACCTCGGGA AAAGGAAGTGAAACCAAACGATAGATTCATGTTCAACTCTGATTTTCAAA GTCGAAGCAGAAGAATCAAGATGCAAGTCGTCACAGCTCAGAAAGAGAAC GAAACTGAGAGAAATCATACGCGCTGTCGCATCAATGCCGACCGCGGTCC TGTGATAGATACAGTTGTCGTGCGCATCATGAAGCATCGTAAGACTTTGG AGCACAACAGACTTATAGCTGAAGTCACCCGAGAATTAGAATCAAAGTTC GAGCCAAACACTCAAGAGATCAAGAAGAGAATTGAAAGTCTTGTAGAGAG AGAGTACTTGGAGAGACAAAAGGACAAGAGGCAGGTGTATCAGTATGTGG CGTAG back to top
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