Gcaud2049.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gcaud2049.t1
Unique Name	Gcaud2049.t1
Type	polypeptide
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	193

Homology

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BLAST of Gcaud2049.t1 vs. uniprot
Match: A0A2V3J3W0_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J3W0_9FLOR)

HSP 1 Score: 170 bits (430), Expect = 5.290e-49
Identity = 112/301 (37.21%), Postives = 143/301 (47.51%), Query Frame = 0

Query:    1 MGDLSVTVLVGRSRWQFAISPQATFGQLRSLVEQKEGAVQDGLRLIFKGKSYPNHTKLCEARVVNGAKMMALRTAKQ-------------------------------------------------------------------------------------------------------------GKILKDEATLEQVGAKHGSSFMLLFNAKHHDAVEHKQQISSIDHQLQQLEANASAVSSQVEHRLLDSVDLAVKKSELQDVLHRLKDNLFSVPSDDERRASMQQRLEAVERVISQL 192
            M DL++TV+ G+  W+  +S   TFG LR+ +E+KEG V  GLRLI KG+S+P+H KL E  V  G+KMM +RT+KQ                                                                                                             GK LKDE  L + G K GSS MLLFNAKHHDA +   ++ SI  +L +LEA   +V+SQ EHRLLDSVDLAVKKSELQD+  RL+DNL SV S+DERRASM+ +L+ VE +IS+L
Sbjct:    1 MSDLTITVIAGKKGWEVKVSSDITFGDLRTQIEEKEGTVAGGLRLICKGRSHPDHLKLSEVGVSTGSKMMVMRTSKQKEQEXXXXKRTKLQSDYKSLSELRAQSSVISKPSTDAGASSSNAKPVVREIGVLGDPQQDCVTSVILIQGKNKYRVNIEMTESVVVLKQKAAFIDGINSKASNMRLLFKGKFLKDECNLSEYGVKDGSSLMLLFNAKHHDAKDDFIEMGSIKKKLDELEAKTRSVASQAEHRLLDSVDLAVKKSELQDIFTRLRDNLSSVRSEDERRASMECQLDVVEELISRL 301

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BLAST of Gcaud2049.t1 vs. uniprot
Match: R7Q3P0_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q3P0_CHOCR)

HSP 1 Score: 57.4 bits (137), Expect = 1.830e-6
Identity = 39/98 (39.80%), Postives = 51/98 (52.04%), Query Frame = 0

Query:    1 MGDLSVTVLVGRSRWQFAISPQATFGQLRSLVEQKEGAVQDGLRLIFKGKSYPNHTKLCEARVVNGAKMMALRTAKQG----------KILKDEATLE 88
            M    V V  G+   +   SP  T   LR  VE K G V  GLRL++KGK   + + L  A+V++GAKMMA+ TAKQ           KI +D A L+
Sbjct:    1 MDSFIVRVSKGKDIIRADCSPDMTVSALRQQVESKAGMVDGGLRLLYKGKFLNDASTLESAKVMSGAKMMAMVTAKQREADLQAEKSVKISQDNAALD 98

The following BLAST results are available for this feature:

BLAST of Gcaud2049.t1 vs. uniprot

BLAST of Gcaud2049.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A2V3J3W0_9FLOR	5.290e-49	37.21	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]
R7Q3P0_CHOCR	1.830e-6	39.80	Uncharacterized protein n=1 Tax=Chondrus crispus T...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 109..129
None	No IPR available	GENE3D	3.10.20.90		coord: 4..72 e-value: 1.3E-11 score: 46.4
IPR000626	Ubiquitin-like domain	PFAM	PF00240	ubiquitin	coord: 13..70 e-value: 4.6E-5 score: 23.1
IPR000626	Ubiquitin-like domain	PROSITE	PS50053	UBIQUITIN_2	coord: 2..78 score: 11.180878
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 4..74

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_795_length_17855_cov_4.297850	contig	NODE_795_length_17855_cov_4.297850:11895..12794 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2049.t1	Gcaud2049.t1	Gracilaria caudata M_176_S67 male	mRNA	NODE_795_length_17855_cov_4.297850 11895..12794 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gcaud2049.t1 ID=Gcaud2049.t1|Name=Gcaud2049.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=193bp
MGDLSVTVLVGRSRWQFAISPQATFGQLRSLVEQKEGAVQDGLRLIFKGK
SYPNHTKLCEARVVNGAKMMALRTAKQGKILKDEATLEQVGAKHGSSFML
LFNAKHHDAVEHKQQISSIDHQLQQLEANASAVSSQVEHRLLDSVDLAVK
KSELQDVLHRLKDNLFSVPSDDERRASMQQRLEAVERVISQL*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000626	Ubiquitin-like_dom
IPR029071	Ubiquitin-like_domsf