Gcaud2047.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2047.t1
Unique NameGcaud2047.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length180
Homology
BLAST of Gcaud2047.t1 vs. uniprot
Match: A0A2V3J4L8_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J4L8_9FLOR)

HSP 1 Score: 209 bits (533), Expect = 2.060e-66
Identity = 111/177 (62.71%), Postives = 133/177 (75.14%), Query Frame = 0
Query:    4 QVFAFVASYP-LGRKCSLPLSNATCKSPYLAHARRPHAAHAQSWRASGIPEPERTGSSADDERLSQELQAKVTELFGGRKNVTIDINTDSDVQFMVQREDPAAEARQVKAAWTVIWSVGVLSVTAGILFTALYYSGAVHGSLDSDRRYDMPMYGSHSYIDPYQLLEESAPEQDLAAQ 179
            + +AF  + P L R   L  +  +  SP+  + +RPH   A SWRASGIPEPE TGSSADDERLSQELQAKVTELFG R N+TID+NTDSDVQF+VQR   + EARQ +AAW+VI SV V+SV AG+LFTA+YY+GAVHGS DSD RY+MP YG+ SYIDPY+LLEE    Q+   Q
Sbjct:    2 EYYAFAGAVPVLPRSNRLKSAIVSEASPF-TYRKRPHIVRASSWRASGIPEPESTGSSADDERLSQELQAKVTELFGSRNNITIDMNTDSDVQFIVQRSVASTEARQKRAAWSVIISVAVISVAAGVLFTAMYYAGAVHGSEDSDGRYEMPTYGTQSYIDPYRLLEEDRQIQESKTQ 177          
BLAST of Gcaud2047.t1 vs. uniprot
Match: R7Q2I8_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q2I8_CHOCR)

HSP 1 Score: 149 bits (377), Expect = 8.690e-43
Identity = 80/148 (54.05%), Postives = 106/148 (71.62%), Query Frame = 0
Query:   28 KSPYLAHARRPHAAHAQSWRASGIPEPERTGSSADDERLSQELQAKVTELFGGRKNVTIDINTDSDVQFMVQREDPAAEARQVKAAWTVIWSVGVLSVTAGILFTALYYSGAVHGSLDSDRRYDMPMYGSHSYIDPYQLLEESAPEQD 175
            K+  + HA R   +  + W AS IPEPE+ G++ADD+ L+ EL+ KV ELFG R+NV+I++  DS+VQF V++ +   E RQ KAAW+VI SV  LSV AGI F  LY +GAVHGS  ++RRYDMP +G+ SYIDPY+LLEE +  QD
Sbjct:   24 KTTRVYHANRVKVS--RRWHASSIPEPEQGGNTADDDALNLELRNKVNELFGSRQNVSIEMEADSNVQFRVRKREVEYEYRQTKAAWSVIGSVAALSVAAGIAFIVLYATGAVHGS-PNERRYDMPTFGTTSYIDPYELLEEESQFQD 168          
BLAST of Gcaud2047.t1 vs. uniprot
Match: A0A7S3ECR1_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3ECR1_9RHOD)

HSP 1 Score: 68.6 bits (166), Expect = 2.040e-11
Identity = 45/118 (38.14%), Postives = 68/118 (57.63%), Query Frame = 0
Query:   58 GSSADDERLSQELQAKVTELFGGRKNVTIDINTD---SDVQFMVQRED-----PAAEARQVKAAWTVIWSVGVLSVTAGILFTALYYSGAVHGSLDSDRRYDMPMYGSHSYIDPYQLL 167
            G+  DD++L+ ELQ +V ELFG  +  +++   D    +  F  Q        P+  +RQ  A +T + S+ V+SV AGILFT L+ SG +H +      Y+MP YG+ SYI+P +LL
Sbjct:   30 GNDMDDQQLNAELQRRVKELFGSSRRESVNGAADRKEGEYSFEPQNSRDPLRAPSRGSRQ-DALFT-LTSIAVMSVIAGILFTFLFESGYIHDASQDRPYYNMPTYGTTSYIEPVELL 145          
BLAST of Gcaud2047.t1 vs. uniprot
Match: A0A7S0BVD9_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BVD9_9RHOD)

HSP 1 Score: 55.8 bits (133), Expect = 5.230e-7
Identity = 39/101 (38.61%), Postives = 59/101 (58.42%), Query Frame = 0
Query:   73 KVTELFGGRKNVTIDINTD---SDVQFMVQ-REDP-AAEARQVKA-AWTVIWSVGVLSVTAGILFTALYYSGAVHGSLDSDRRYDMPMYGSHSYIDPYQLL 167
            +V ELFGG +  +++   D    +  F  Q + DP +A +R  +  A   + S+ V+SV AGILFT L+ SG +H +      Y+MP YG+ SYI+P +LL
Sbjct:    2 RVKELFGGAQRESLNGAADRREGEYSFEPQNKRDPLSAPSRGSRQDALFTLTSIAVMSVIAGILFTFLFESGYIHDASQERPYYNMPTYGTTSYIEPVELL 102          
BLAST of Gcaud2047.t1 vs. uniprot
Match: M1VA14_CYAM1 (Uncharacterized protein n=1 Tax=Cyanidioschyzon merolae (strain 10D) TaxID=280699 RepID=M1VA14_CYAM1)

HSP 1 Score: 55.8 bits (133), Expect = 2.330e-6
Identity = 53/183 (28.96%), Postives = 89/183 (48.63%), Query Frame = 0
Query:    6 FAFVASYPLGRKCSLPLSNATCKSPYLAHARRPHAAHAQSWRASG-IPEPERTGSSADDE------RLSQELQAKVTELFGGRKNVT---IDINTDSDVQFMVQREDPAAEARQ-VKA------AWTVIWSVGVLSVTAGILFTALYYSGAVHGSLDSDRRYDMPMYGSHSYIDPYQLLEESA 171
            FAF + + L    ++ +S    +       R+  A      RASG  P+      S DD+       L + L+ +V +L+G  +      +    DS ++  ++RE      R  V+A      A  V+ S+  LS+ +G+LF  +Y +GAVHG   S + +  P+YG+ SY++PY+LLE S+
Sbjct:   16 FAFASRHLLQTGHTVRVSTCAARVGPRYLGRQRFACRLGKLRASGPFPDGPENPISPDDQPDGSDSALLESLRRRVRDLYGSEEAPVAGRVPPTKDSALEAPLRRERGGRTVRTYVRAQQERSQALFVVGSIFFLSILSGVLFVFIYGAGAVHGGGHSVQ-HKPPIYGTDSYVNPYELLESSS 197          
The following BLAST results are available for this feature:
BLAST of Gcaud2047.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2V3J4L8_9FLOR2.060e-6662.71Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7Q2I8_CHOCR8.690e-4354.05Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A7S3ECR1_9RHOD2.040e-1138.14Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S0BVD9_9RHOD5.230e-738.61Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
M1VA14_CYAM12.330e-628.96Uncharacterized protein n=1 Tax=Cyanidioschyzon me... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 43..66
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 116..136
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..115
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 137..179
NoneNo IPR availableTMHMMTMhelixcoord: 114..136

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_795_length_17855_cov_4.297850contigNODE_795_length_17855_cov_4.297850:9409..9948 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2047.t1Gcaud2047.t1Gracilaria caudata M_176_S67 malemRNANODE_795_length_17855_cov_4.297850 9409..9948 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2047.t1 ID=Gcaud2047.t1|Name=Gcaud2047.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=180bp
MNQQVFAFVASYPLGRKCSLPLSNATCKSPYLAHARRPHAAHAQSWRASG
IPEPERTGSSADDERLSQELQAKVTELFGGRKNVTIDINTDSDVQFMVQR
EDPAAEARQVKAAWTVIWSVGVLSVTAGILFTALYYSGAVHGSLDSDRRY
DMPMYGSHSYIDPYQLLEESAPEQDLAAQ*
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