Gcaud2051.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2051.t1
Unique NameGcaud2051.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length370
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_795_length_17855_cov_4.297850contigNODE_795_length_17855_cov_4.297850:15076..16343 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707687.1
Preferred nameDRG1
PFAMsMMR_HSR1,MMR_HSR1_Xtn,TGS
Max annot lvl2759|Eukaryota
KEGG koko:K02156,ko:K06944
KEGG Pathwayko04320,map04320
GOsGO:0000166,GO:0001882,GO:0001883,GO:0002181,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005844,GO:0006139,GO:0006351,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0007275,GO:0008134,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0010494,GO:0010646,GO:0010647,GO:0016070,GO:0016462,GO:0016604,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0018130,GO:0019001,GO:0019003,GO:0019438,GO:0019538,GO:0031974,GO:0031981,GO:0032101,GO:0032103,GO:0032104,GO:0032106,GO:0032107,GO:0032109,GO:0032501,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032774,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0035639,GO:0035770,GO:0036094,GO:0036464,GO:0042802,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048856,GO:0050789,GO:0050794,GO:0065007,GO:0070013,GO:0071704,GO:0080134,GO:0080135,GO:0090304,GO:0097159,GO:0097367,GO:0097659,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903832,GO:1903833,GO:1990904
Evalue4.37e-181
EggNOG OGsCOG1163@1|root,KOG1487@2759|Eukaryota
DescriptionGTP-binding protein
COG categoryZ
BRITEko00000,ko00001,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2051Gcaud2051Gracilaria caudata M_176_S67 malegeneNODE_795_length_17855_cov_4.297850 15076..16343 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2051.t1Gcaud2051.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_795_length_17855_cov_4.297850 15076..16343 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2051.t1.stop1Gcaud2051.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_795_length_17855_cov_4.297850 15076..15078 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2051.t1.CDS1Gcaud2051.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_795_length_17855_cov_4.297850 15076..15517 -
Gcaud2051.t1.CDS2Gcaud2051.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_795_length_17855_cov_4.297850 15676..16343 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2051.t1.exon1Gcaud2051.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_795_length_17855_cov_4.297850 15076..15517 -
Gcaud2051.t1.exon2Gcaud2051.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_795_length_17855_cov_4.297850 15676..16343 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2051.t1.intron1Gcaud2051.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_795_length_17855_cov_4.297850 15518..15675 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2051.t1.start1Gcaud2051.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_795_length_17855_cov_4.297850 16341..16343 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2051.t1 ID=Gcaud2051.t1|Name=Gcaud2051.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=370bp
MAATLAKIEEIEAEMARTQKNKATSQHLGILKAKLAKLRRELIAPPKGGG
GGGEGFEVPKTGDARVGLIGFPSVGKSSLLTLLTGQESLAAAYEFTTLTC
IPGMLYYNGAKIQLLDLPGIIEGAKDGKGRGRQVIAVARSCDLILIVLDA
SKPASHKRIIEKELEGFGIRLNKQPPPVIYRRKDRGGISFSSAVQTELNL
ETIKSVCAEYRIHNADFIVRGDCTIDEIIDVIEGNRRYVPALYVVNMIDK
ISMEELELYHRMDRYVPISGGLQWNIDGLLEAIWEDLKLVRIYTKPKGVT
VVDFAEPVILKNDERQRTVAAFCRRIHKTLENELKFALVWGKSTKFNPQK
CGKEHVLWDEDVIQLVKQT*
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spliced messenger RNA

>Gcaud2051.t1 ID=Gcaud2051.t1|Name=Gcaud2051.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1110bp|location=Sequence derived from alignment at NODE_795_length_17855_cov_4.297850:15076..16343- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGCTACACTCGCTAAGATCGAGGAGATTGAAGCCGAAATGGCTCG
CACCCAGAAAAACAAGGCCACGTCGCAGCATCTCGGAATTCTCAAAGCCA
AGCTTGCAAAGCTTCGTCGAGAGCTCATTGCGCCACCTAAGGGCGGTGGG
GGCGGTGGCGAGGGCTTTGAGGTGCCAAAGACCGGAGATGCACGTGTCGG
TCTTATCGGATTTCCGTCTGTTGGCAAATCATCGCTGCTCACGCTCTTGA
CCGGTCAGGAGAGTTTGGCTGCAGCGTACGAGTTCACCACGCTTACATGC
ATCCCGGGCATGTTGTATTACAATGGTGCCAAGATTCAGTTGTTGGATCT
GCCGGGTATTATTGAGGGCGCCAAGGATGGAAAGGGACGAGGGCGTCAAG
TCATTGCTGTCGCTCGATCTTGTGATCTTATTCTCATCGTGTTGGATGCG
TCAAAGCCGGCGAGCCACAAGCGCATTATCGAGAAGGAGCTTGAAGGCTT
TGGAATTCGCCTCAACAAACAGCCTCCTCCGGTTATTTACAGACGCAAAG
ACCGTGGCGGCATTTCGTTTTCCTCTGCTGTTCAGACGGAACTTAATCTC
GAAACCATAAAGAGTGTTTGCGCAGAATACAGGATTCACAACGCTGACTT
TATAGTACGCGGAGACTGTACCATTGATGAGATCATTGATGTTATTGAAG
GAAATAGAAGATATGTGCCCGCCTTATACGTGGTCAATATGATCGACAAG
ATTAGTATGGAAGAGTTAGAACTGTACCATCGAATGGATCGATACGTTCC
AATCAGCGGAGGACTTCAGTGGAACATTGATGGTCTACTGGAGGCCATTT
GGGAAGACCTCAAACTCGTACGCATCTACACAAAGCCAAAAGGTGTAACT
GTCGTGGACTTTGCAGAACCAGTTATTCTCAAGAACGATGAACGACAACG
AACTGTGGCTGCGTTCTGCCGCCGAATCCACAAGACGCTGGAAAATGAGC
TCAAGTTCGCCCTCGTATGGGGCAAAAGCACGAAGTTCAATCCGCAAAAA
TGCGGAAAAGAACACGTGTTGTGGGACGAAGACGTCATCCAGCTTGTGAA
ACAAACTTAG
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protein sequence of Gcaud2051.t1

>Gcaud2051.t1 ID=Gcaud2051.t1|Name=Gcaud2051.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=370bp
MAATLAKIEEIEAEMARTQKNKATSQHLGILKAKLAKLRRELIAPPKGGG
GGGEGFEVPKTGDARVGLIGFPSVGKSSLLTLLTGQESLAAAYEFTTLTC
IPGMLYYNGAKIQLLDLPGIIEGAKDGKGRGRQVIAVARSCDLILIVLDA
SKPASHKRIIEKELEGFGIRLNKQPPPVIYRRKDRGGISFSSAVQTELNL
ETIKSVCAEYRIHNADFIVRGDCTIDEIIDVIEGNRRYVPALYVVNMIDK
ISMEELELYHRMDRYVPISGGLQWNIDGLLEAIWEDLKLVRIYTKPKGVT
VVDFAEPVILKNDERQRTVAAFCRRIHKTLENELKFALVWGKSTKFNPQK
CGKEHVLWDEDVIQLVKQT*
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mRNA from alignment at NODE_795_length_17855_cov_4.297850:15076..16343-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2051.t1 ID=Gcaud2051.t1|Name=Gcaud2051.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1268bp|location=Sequence derived from alignment at NODE_795_length_17855_cov_4.297850:15076..16343- (Gracilaria caudata M_176_S67 male)
ATGGCAGCTACACTCGCTAAGATCGAGGAGATTGAAGCCGAAATGGCTCG
CACCCAGAAAAACAAGGCCACGTCGCAGCATCTCGGAATTCTCAAAGCCA
AGCTTGCAAAGCTTCGTCGAGAGCTCATTGCGCCACCTAAGGGCGGTGGG
GGCGGTGGCGAGGGCTTTGAGGTGCCAAAGACCGGAGATGCACGTGTCGG
TCTTATCGGATTTCCGTCTGTTGGCAAATCATCGCTGCTCACGCTCTTGA
CCGGTCAGGAGAGTTTGGCTGCAGCGTACGAGTTCACCACGCTTACATGC
ATCCCGGGCATGTTGTATTACAATGGTGCCAAGATTCAGTTGTTGGATCT
GCCGGGTATTATTGAGGGCGCCAAGGATGGAAAGGGACGAGGGCGTCAAG
TCATTGCTGTCGCTCGATCTTGTGATCTTATTCTCATCGTGTTGGATGCG
TCAAAGCCGGCGAGCCACAAGCGCATTATCGAGAAGGAGCTTGAAGGCTT
TGGAATTCGCCTCAACAAACAGCCTCCTCCGGTTATTTACAGACGCAAAG
ACCGTGGCGGCATTTCGTTTTCCTCTGCTGTTCAGACGGAACTTAATCTC
GAAACCATAAAGAGTGTTTGCGCAGAATACAGGATTCACAACGCTGACTT
TATAGTACGCGGAGACTGGTAAGTTGTTTTGAATTGTTGTCTGATCACAA
TCAGGCAGCATGTACAGCCCCTGTGGGCTATAATTTCGAGCAACGAGGAT
ATCGTTTATGCTTCTACAAGAAGCCCTATATCACTTACTAACTTCACTTT
CGTTGATCACTGTCATCACAAAAAAGTACCATTGATGAGATCATTGATGT
TATTGAAGGAAATAGAAGATATGTGCCCGCCTTATACGTGGTCAATATGA
TCGACAAGATTAGTATGGAAGAGTTAGAACTGTACCATCGAATGGATCGA
TACGTTCCAATCAGCGGAGGACTTCAGTGGAACATTGATGGTCTACTGGA
GGCCATTTGGGAAGACCTCAAACTCGTACGCATCTACACAAAGCCAAAAG
GTGTAACTGTCGTGGACTTTGCAGAACCAGTTATTCTCAAGAACGATGAA
CGACAACGAACTGTGGCTGCGTTCTGCCGCCGAATCCACAAGACGCTGGA
AAATGAGCTCAAGTTCGCCCTCGTATGGGGCAAAAGCACGAAGTTCAATC
CGCAAAAATGCGGAAAAGAACACGTGTTGTGGGACGAAGACGTCATCCAG
CTTGTGAAACAAACTTAG
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Coding sequence (CDS) from alignment at NODE_795_length_17855_cov_4.297850:15076..16343-

>Gcaud2051.t1 ID=Gcaud2051.t1|Name=Gcaud2051.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1110bp|location=Sequence derived from alignment at NODE_795_length_17855_cov_4.297850:15076..16343- (Gracilaria caudata M_176_S67 male)
ATGGCAGCTACACTCGCTAAGATCGAGGAGATTGAAGCCGAAATGGCTCG
CACCCAGAAAAACAAGGCCACGTCGCAGCATCTCGGAATTCTCAAAGCCA
AGCTTGCAAAGCTTCGTCGAGAGCTCATTGCGCCACCTAAGGGCGGTGGG
GGCGGTGGCGAGGGCTTTGAGGTGCCAAAGACCGGAGATGCACGTGTCGG
TCTTATCGGATTTCCGTCTGTTGGCAAATCATCGCTGCTCACGCTCTTGA
CCGGTCAGGAGAGTTTGGCTGCAGCGTACGAGTTCACCACGCTTACATGC
ATCCCGGGCATGTTGTATTACAATGGTGCCAAGATTCAGTTGTTGGATCT
GCCGGGTATTATTGAGGGCGCCAAGGATGGAAAGGGACGAGGGCGTCAAG
TCATTGCTGTCGCTCGATCTTGTGATCTTATTCTCATCGTGTTGGATGCG
TCAAAGCCGGCGAGCCACAAGCGCATTATCGAGAAGGAGCTTGAAGGCTT
TGGAATTCGCCTCAACAAACAGCCTCCTCCGGTTATTTACAGACGCAAAG
ACCGTGGCGGCATTTCGTTTTCCTCTGCTGTTCAGACGGAACTTAATCTC
GAAACCATAAAGAGTGTTTGCGCAGAATACAGGATTCACAACGCTGACTT
TATAGTACGCGGAGACTGTACCATTGATGAGATCATTGATGTTATTGAAG
GAAATAGAAGATATGTGCCCGCCTTATACGTGGTCAATATGATCGACAAG
ATTAGTATGGAAGAGTTAGAACTGTACCATCGAATGGATCGATACGTTCC
AATCAGCGGAGGACTTCAGTGGAACATTGATGGTCTACTGGAGGCCATTT
GGGAAGACCTCAAACTCGTACGCATCTACACAAAGCCAAAAGGTGTAACT
GTCGTGGACTTTGCAGAACCAGTTATTCTCAAGAACGATGAACGACAACG
AACTGTGGCTGCGTTCTGCCGCCGAATCCACAAGACGCTGGAAAATGAGC
TCAAGTTCGCCCTCGTATGGGGCAAAAGCACGAAGTTCAATCCGCAAAAA
TGCGGAAAAGAACACGTGTTGTGGGACGAAGACGTCATCCAGCTTGTGAA
ACAAACTTAG
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