Gcaud2043.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2043.t1
Unique NameGcaud2043.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length329
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_795_length_17855_cov_4.297850contigNODE_795_length_17855_cov_4.297850:1990..3203 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog946362.XP_004994306.1
Preferred nameTRR1
PFAMsPyr_redox_2
Max annot lvl33154|Opisthokonta
KEGG rclassRC00013,RC02518,RC02873
KEGG koko:K00344,ko:K00384
KEGG ReactionR02016,R03596,R09372
KEGG Pathwayko00450,map00450
GOsGO:0000302,GO:0000303,GO:0000305,GO:0003674,GO:0003824,GO:0004791,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005758,GO:0005829,GO:0006801,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0008198,GO:0009636,GO:0009987,GO:0010035,GO:0015036,GO:0016209,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0019430,GO:0019725,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0033554,GO:0034599,GO:0034614,GO:0042221,GO:0042592,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045454,GO:0046872,GO:0046914,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0055114,GO:0065007,GO:0065008,GO:0070013,GO:0070887,GO:0071450,GO:0071451,GO:0072593,GO:0097237,GO:0098754,GO:0098869,GO:1901700,GO:1901701,GO:1990748
Evalue1.37e-137
EggNOG OGsCOG0492@1|root,KOG0404@2759|Eukaryota,38I0K@33154|Opisthokonta
EC1.6.5.5,1.8.1.9
DescriptionBelongs to the class-II pyridine nucleotide-disulfide oxidoreductase family
COG categoryO
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2043Gcaud2043Gracilaria caudata M_176_S67 malegeneNODE_795_length_17855_cov_4.297850 1990..3203 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2043.t1Gcaud2043.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_795_length_17855_cov_4.297850 1990..3203 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2043.t1.start1Gcaud2043.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_795_length_17855_cov_4.297850 1990..1992 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2043.t1.CDS1Gcaud2043.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_795_length_17855_cov_4.297850 1990..2914 +
Gcaud2043.t1.CDS2Gcaud2043.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_795_length_17855_cov_4.297850 2995..3002 +
Gcaud2043.t1.CDS3Gcaud2043.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_795_length_17855_cov_4.297850 3150..3203 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2043.t1.exon1Gcaud2043.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_795_length_17855_cov_4.297850 1990..2914 +
Gcaud2043.t1.exon2Gcaud2043.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_795_length_17855_cov_4.297850 2995..3002 +
Gcaud2043.t1.exon3Gcaud2043.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_795_length_17855_cov_4.297850 3150..3203 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2043.t1.intron1Gcaud2043.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_795_length_17855_cov_4.297850 2915..2994 +
Gcaud2043.t1.intron2Gcaud2043.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_795_length_17855_cov_4.297850 3003..3149 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2043.t1.stop1Gcaud2043.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_795_length_17855_cov_4.297850 3201..3203 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2043.t1 ID=Gcaud2043.t1|Name=Gcaud2043.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=329bp
MGEDTNATENVVIIGSGPAAHTAAIYLARAELKPLLYEGFLAAGVAAGGQ
LTTTTDVENFPGFPDGIGGQEITDLFRKQSLRFGTRIVTETVTAVDLSSR
PFRITGEYGTNTTANSVVLATGATARRLDIRGTRDGEYWQRGISACAVCD
GAAPIFRNAVLAVVGGGDSAMEEATFLTKFGSKVIIIHRRDQLRASRIMQ
RRARNNPKIEFLYSHVVDEAKGDGNLLKSLVVKDVKTGKLREIECGGLFF
AIGHEPNIKFLNNQVELDHQSYVITEPDSTATSVKGVFAAGDVQDKKWRQ
AITAAGTGCRGFLLVVRESFAESRFMAI*
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spliced messenger RNA

>Gcaud2043.t1 ID=Gcaud2043.t1|Name=Gcaud2043.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=987bp|location=Sequence derived from alignment at NODE_795_length_17855_cov_4.297850:1990..3203+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAGAAGATACGAACGCTACCGAGAACGTCGTGATCATCGGCTCCGG
CCCTGCCGCACACACAGCCGCCATTTATCTGGCCAGGGCAGAGCTCAAGC
CTCTTTTGTACGAGGGCTTTCTTGCGGCCGGCGTCGCTGCGGGCGGCCAG
CTCACCACCACCACCGATGTGGAGAACTTTCCCGGATTTCCAGACGGAAT
CGGCGGCCAAGAAATTACCGACCTTTTCCGAAAGCAATCGTTGCGCTTCG
GTACCAGGATCGTTACCGAGACTGTCACCGCCGTTGATCTGTCCTCCCGT
CCGTTCCGGATAACTGGCGAATACGGCACGAACACCACCGCCAACTCCGT
TGTGCTTGCTACTGGAGCTACTGCGCGACGTCTGGATATAAGAGGTACCA
GGGATGGCGAGTACTGGCAGCGAGGGATTAGTGCGTGCGCAGTGTGTGAT
GGAGCCGCCCCCATTTTTAGAAACGCCGTTTTGGCTGTGGTAGGCGGTGG
CGATTCCGCAATGGAAGAGGCTACCTTCCTCACCAAATTCGGATCAAAAG
TGATCATCATCCACCGACGCGATCAATTGCGAGCTTCTCGCATCATGCAG
CGCAGAGCGAGAAACAATCCGAAAATAGAATTCCTGTACTCTCACGTTGT
CGATGAGGCCAAGGGAGATGGAAATCTTCTGAAAAgtctcgtcgtaaaag
acgtcaagaccggcaagttgcgggaaatagaatgtggaggcctctttttt
gctattggtcatgaaCCAAACATTAAGTTCTTGAATAATCAAGTCGAACT
TGATCACCAGTCGTATGTGATCACCGAACCGGACTCCACCGCCACTAGTG
TGAAGGGCGTTTTTGCGGCGGGCGATGTGCAAGACAAGAAATGGAGGCAA
GCGATCACTGCCGCTGGCACCGGCTGTAGAGGCTTTTTGCTTGTCGTGCG
AGAAAGCTTTGCAGAAAGTCGGTTTATGGCAATCTAA
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protein sequence of Gcaud2043.t1

>Gcaud2043.t1 ID=Gcaud2043.t1|Name=Gcaud2043.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=329bp
MGEDTNATENVVIIGSGPAAHTAAIYLARAELKPLLYEGFLAAGVAAGGQ
LTTTTDVENFPGFPDGIGGQEITDLFRKQSLRFGTRIVTETVTAVDLSSR
PFRITGEYGTNTTANSVVLATGATARRLDIRGTRDGEYWQRGISACAVCD
GAAPIFRNAVLAVVGGGDSAMEEATFLTKFGSKVIIIHRRDQLRASRIMQ
RRARNNPKIEFLYSHVVDEAKGDGNLLKSLVVKDVKTGKLREIECGGLFF
AIGHEPNIKFLNNQVELDHQSYVITEPDSTATSVKGVFAAGDVQDKKWRQ
AITAAGTGCRGFLLVVRESFAESRFMAI*
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mRNA from alignment at NODE_795_length_17855_cov_4.297850:1990..3203+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2043.t1 ID=Gcaud2043.t1|Name=Gcaud2043.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1214bp|location=Sequence derived from alignment at NODE_795_length_17855_cov_4.297850:1990..3203+ (Gracilaria caudata M_176_S67 male)
ATGGGAGAAGATACGAACGCTACCGAGAACGTCGTGATCATCGGCTCCGG
CCCTGCCGCACACACAGCCGCCATTTATCTGGCCAGGGCAGAGCTCAAGC
CTCTTTTGTACGAGGGCTTTCTTGCGGCCGGCGTCGCTGCGGGCGGCCAG
CTCACCACCACCACCGATGTGGAGAACTTTCCCGGATTTCCAGACGGAAT
CGGCGGCCAAGAAATTACCGACCTTTTCCGAAAGCAATCGTTGCGCTTCG
GTACCAGGATCGTTACCGAGACTGTCACCGCCGTTGATCTGTCCTCCCGT
CCGTTCCGGATAACTGGCGAATACGGCACGAACACCACCGCCAACTCCGT
TGTGCTTGCTACTGGAGCTACTGCGCGACGTCTGGATATAAGAGGTACCA
GGGATGGCGAGTACTGGCAGCGAGGGATTAGTGCGTGCGCAGTGTGTGAT
GGAGCCGCCCCCATTTTTAGAAACGCCGTTTTGGCTGTGGTAGGCGGTGG
CGATTCCGCAATGGAAGAGGCTACCTTCCTCACCAAATTCGGATCAAAAG
TGATCATCATCCACCGACGCGATCAATTGCGAGCTTCTCGCATCATGCAG
CGCAGAGCGAGAAACAATCCGAAAATAGAATTCCTGTACTCTCACGTTGT
CGATGAGGCCAAGGGAGATGGAAATCTTCTGAAAAgtctcgtcgtaaaag
acgtcaagaccggcaagttgcgggaaatagaatgtggaggcctctttttt
gctattggtcatgaaCCAAACATTAAGTTCTTGAATAATCAAGTCGAACT
TGATCACCAGTCGTATGTGATCACCGAACCGGACTCCACCGCCACTAGTG
TGAAGGGCGTTTTTGCGGCGGGCGATGTGCAAGACAAGAAATGGAGGCAA
GCGATCACTGCCGCTGGCACCGGCTGTATGGCAGCTTTGGAAGTTGAAGA
GTATTTAGAAACGCTCCGTGAACAGGAGGAACTATTAACGGACAAGCCCG
TACAGGTAGAGGCGTGAGTTGGTCTTTCGGTTTGCTGGCGTCATGCATCG
AACCGAACCATAGGAACCAATACTAATCTGTTGGAAAGCATCTGCATTTG
GGAATGTCTTGCTGCTAATTTTGGACTAGCTCTGTTCTTTCGCCTCAACG
ATCTTTATAGTTTTTGCTTGTCGTGCGAGAAAGCTTTGCAGAAAGTCGGT
TTATGGCAATCTAA
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Coding sequence (CDS) from alignment at NODE_795_length_17855_cov_4.297850:1990..3203+

>Gcaud2043.t1 ID=Gcaud2043.t1|Name=Gcaud2043.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=987bp|location=Sequence derived from alignment at NODE_795_length_17855_cov_4.297850:1990..3203+ (Gracilaria caudata M_176_S67 male)
ATGGGAGAAGATACGAACGCTACCGAGAACGTCGTGATCATCGGCTCCGG
CCCTGCCGCACACACAGCCGCCATTTATCTGGCCAGGGCAGAGCTCAAGC
CTCTTTTGTACGAGGGCTTTCTTGCGGCCGGCGTCGCTGCGGGCGGCCAG
CTCACCACCACCACCGATGTGGAGAACTTTCCCGGATTTCCAGACGGAAT
CGGCGGCCAAGAAATTACCGACCTTTTCCGAAAGCAATCGTTGCGCTTCG
GTACCAGGATCGTTACCGAGACTGTCACCGCCGTTGATCTGTCCTCCCGT
CCGTTCCGGATAACTGGCGAATACGGCACGAACACCACCGCCAACTCCGT
TGTGCTTGCTACTGGAGCTACTGCGCGACGTCTGGATATAAGAGGTACCA
GGGATGGCGAGTACTGGCAGCGAGGGATTAGTGCGTGCGCAGTGTGTGAT
GGAGCCGCCCCCATTTTTAGAAACGCCGTTTTGGCTGTGGTAGGCGGTGG
CGATTCCGCAATGGAAGAGGCTACCTTCCTCACCAAATTCGGATCAAAAG
TGATCATCATCCACCGACGCGATCAATTGCGAGCTTCTCGCATCATGCAG
CGCAGAGCGAGAAACAATCCGAAAATAGAATTCCTGTACTCTCACGTTGT
CGATGAGGCCAAGGGAGATGGAAATCTTCTGAAAAgtctcgtcgtaaaag
acgtcaagaccggcaagttgcgggaaatagaatgtggaggcctctttttt
gctattggtcatgaaCCAAACATTAAGTTCTTGAATAATCAAGTCGAACT
TGATCACCAGTCGTATGTGATCACCGAACCGGACTCCACCGCCACTAGTG
TGAAGGGCGTTTTTGCGGCGGGCGATGTGCAAGACAAGAAATGGAGGCAA
GCGATCACTGCCGCTGGCACCGGCTGTAGAGGCTTTTTGCTTGTCGTGCG
AGAAAGCTTTGCAGAAAGTCGGTTTATGGCAATCTAA
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