Gcaud2046.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2046.t1
Unique NameGcaud2046.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length522
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_795_length_17855_cov_4.297850contigNODE_795_length_17855_cov_4.297850:6233..7999 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog395961.Cyan7425_1438
Preferred namegatB
PFAMsGatB_N,GatB_Yqey
Max annot lvl1117|Cyanobacteria
KEGG rclassRC00010
KEGG koko:K02434
KEGG ReactionR03905,R04212
KEGG Pathwayko00970,ko01100,map00970,map01100
GOsGO:0003674,GO:0003824,GO:0006082,GO:0006139,GO:0006399,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016874,GO:0016879,GO:0016884,GO:0019752,GO:0034641,GO:0034660,GO:0043038,GO:0043039,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0046483,GO:0050567,GO:0070681,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564
Evalue1.92e-192
EggNOG OGsCOG0064@1|root,COG0064@2|Bacteria,1G0H0@1117|Cyanobacteria,3KFXN@43988|Cyanothece
EC6.3.5.6,6.3.5.7
DescriptionAllows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
COG categoryJ
BRITEko00000,ko00001,ko01000,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2046Gcaud2046Gracilaria caudata M_176_S67 malegeneNODE_795_length_17855_cov_4.297850 6233..7999 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2046.t1Gcaud2046.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_795_length_17855_cov_4.297850 6233..7999 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2046.t1.start1Gcaud2046.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_795_length_17855_cov_4.297850 6233..6235 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2046.t1.CDS1Gcaud2046.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_795_length_17855_cov_4.297850 6233..7593 +
Gcaud2046.t1.CDS2Gcaud2046.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_795_length_17855_cov_4.297850 7726..7819 +
Gcaud2046.t1.CDS3Gcaud2046.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_795_length_17855_cov_4.297850 7889..7999 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2046.t1.exon1Gcaud2046.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_795_length_17855_cov_4.297850 6233..7593 +
Gcaud2046.t1.exon2Gcaud2046.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_795_length_17855_cov_4.297850 7726..7819 +
Gcaud2046.t1.exon3Gcaud2046.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_795_length_17855_cov_4.297850 7889..7999 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2046.t1.intron1Gcaud2046.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_795_length_17855_cov_4.297850 7594..7725 +
Gcaud2046.t1.intron2Gcaud2046.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_795_length_17855_cov_4.297850 7820..7888 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2046.t1.stop1Gcaud2046.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_795_length_17855_cov_4.297850 7997..7999 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2046.t1 ID=Gcaud2046.t1|Name=Gcaud2046.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=522bp
MATTQAPEKKTQGRSKKRRNASGKREKKGSMSPGLLKALEKYEPVIGIEM
HVQLSTKTKAYCNCSTKAVRTPNTNICPVCMGHPGALPVVNSKVVELAAK
AGIALGCSISDYCRFDRKNYYYVDTPKNYQITQDTYPIAKNGSLQLATFG
KSIGITRLHMEEDSAKMTHEGAGAAGRLTDSTHSLLDFNRSGIPLVEIVS
EPDIRTGSEAAAYGQELQRVLRYVGTSDCNMQDGSLRCDVNVSIRPKGST
AFGTKVELKNLNSFASAQKSIDFEIERQASILEDGGTVLLETRTWDEKAS
ETKTMRVKEGASDYRYFPEPDIPPLRISHDQLEEWRNSMPELPAEKRERY
QRDFGLSGYDAFLLSDDVLTARYFEQSIDSGADPKQAANWIMGDITKVLK
NEKIDINLCKLTPSNLANMIGLIDDGVISGKIAKDLISELVMKGGVPSEI
VEERDLKLISDPDIIRGLAATVIEENPKELAALKDGKTRLFGFFVGKTLA
ASGGKGDPVIINSVLKEMLES*
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spliced messenger RNA

>Gcaud2046.t1 ID=Gcaud2046.t1|Name=Gcaud2046.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1566bp|location=Sequence derived from alignment at NODE_795_length_17855_cov_4.297850:6233..7999+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTACTACTCAAGCGCCCGAAAAGAAAACCCAAGGTCGCTCCAAGAA
ACGAAGAAATGCATCGGGAAAACGCGAAAAGAAAGGTTCTATGTCTCCTG
GTCTTCTGAAAGCCCTCGAAAAGTATGAGCCGGTTATCGGAATAGAAATG
CACGTGCAGCTTTCCACAAAGACAAAGGCATATTGCAACTGTTCGACGAA
AGCAGTTCGAACTCCGAACACAAACATTTGTCCTGTTTGTATGGGTCATC
CTGGGGCGCTTCCCGTAGTGAATTCCAAGGTTGTGGAACTAGCTGCCAAA
GCTGGTATTGCCCTGGGATGCTCGATATCAGATTACTGCCGTTTTGACCG
GAAGAACTATTACTACGTTGACACACCGAAGAACTATCAAATTACGCAGG
ATACTTATCCCATCGCCAAGAATGGAAGTTTGCAGCTGGCCACTTTCGGA
AAAAGCATCGGAATAACCCGTTTACATATGGAAGAGGACTCTGCCAAAAT
GACACACGAAGGAGCTGGTGCGGCTGGGCGCCTCACTGACTCAACCCATT
CGCTTCTCGATTTCAACCGCAGTGGGATTCCACTGGTGGAAATTGTAAGT
GAGCCAGATATTCGAACTGGCTCTGAAGCTGCAGCGTACGGCCAAGAGCT
CCAACGTGTTTTGAGATACGTGGGTACCAGTGACTGTAACATGCAGGATG
GAAGTCTTCGTTGTGACGTTAATGTTTCCATTCGACCGAAAGGAAGTACG
GCGTTCGGGACAAAGGTCGAGCTCAAGAACCTCAACTCCTTTGCATCTGC
TCAGAAGTCAATCGACTTTGAAATAGAAAGGCAAGCAAGCATTCTTGAGG
ACGGAGGTACAGTGCTTCTAGAAACAAGAACATGGGATGAGAAGGCAAGC
GAAACAAAGACTATGAGGGTGAAAGAAGGTGCCTCAGATTATAGGTACTT
TCCAGAACCAGACATTCCTCCTCTGCGTATTTCTCATGATCAACTGGAAG
AATGGCGAAACAGCATGCCAGAGCTGCCAGCAGAAAAGCGAGAAAGGTAT
CAGCGCGACTTTGGTCTCTCAGGCTACGATGCCTTTTTGCTCTCCGATGA
TGTGCTCACAGCACGTTATTTTGAGCAATCTATAGATTCTGGAGCAGATC
CGAAGCAAGCGGCGAACTGGATTATGGGGGACATTACAAAAGTATTGAAG
AACGAGAAGATTGACATTAATCTTTGCAAGCTCACTCCTTCAAATCTAGC
CAATATGATCGGCCTCATCGACGATGGAGTTATCAGTGGAAAGATTGCAA
AGGATTTGATATCAGAACTAGTGATGAAAGGTGGTGTTCCATCTGAGATT
GTTGAGGAAAGGGATCTTAAACTGATTTCGGATCCTGACATAATACGAGG
GCTGGCAGCAACTGTTATTGAAGAAAACCCGAAGGAACTGGCGGCTTTGA
AAGATGGGAAAACTCGATTATTTGGATTCTTCGTGGGTAAAACACTGGCG
GCTTCAGGCGGAAAGGGGGACCCCGTTATAATTAACTCAGTTTTGAAAGA
GATGCTAGAATCATAA
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protein sequence of Gcaud2046.t1

>Gcaud2046.t1 ID=Gcaud2046.t1|Name=Gcaud2046.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=522bp
MATTQAPEKKTQGRSKKRRNASGKREKKGSMSPGLLKALEKYEPVIGIEM
HVQLSTKTKAYCNCSTKAVRTPNTNICPVCMGHPGALPVVNSKVVELAAK
AGIALGCSISDYCRFDRKNYYYVDTPKNYQITQDTYPIAKNGSLQLATFG
KSIGITRLHMEEDSAKMTHEGAGAAGRLTDSTHSLLDFNRSGIPLVEIVS
EPDIRTGSEAAAYGQELQRVLRYVGTSDCNMQDGSLRCDVNVSIRPKGST
AFGTKVELKNLNSFASAQKSIDFEIERQASILEDGGTVLLETRTWDEKAS
ETKTMRVKEGASDYRYFPEPDIPPLRISHDQLEEWRNSMPELPAEKRERY
QRDFGLSGYDAFLLSDDVLTARYFEQSIDSGADPKQAANWIMGDITKVLK
NEKIDINLCKLTPSNLANMIGLIDDGVISGKIAKDLISELVMKGGVPSEI
VEERDLKLISDPDIIRGLAATVIEENPKELAALKDGKTRLFGFFVGKTLA
ASGGKGDPVIINSVLKEMLES*
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mRNA from alignment at NODE_795_length_17855_cov_4.297850:6233..7999+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2046.t1 ID=Gcaud2046.t1|Name=Gcaud2046.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1767bp|location=Sequence derived from alignment at NODE_795_length_17855_cov_4.297850:6233..7999+ (Gracilaria caudata M_176_S67 male)
ATGGCTACTACTCAAGCGCCCGAAAAGAAAACCCAAGGTCGCTCCAAGAA
ACGAAGAAATGCATCGGGAAAACGCGAAAAGAAAGGTTCTATGTCTCCTG
GTCTTCTGAAAGCCCTCGAAAAGTATGAGCCGGTTATCGGAATAGAAATG
CACGTGCAGCTTTCCACAAAGACAAAGGCATATTGCAACTGTTCGACGAA
AGCAGTTCGAACTCCGAACACAAACATTTGTCCTGTTTGTATGGGTCATC
CTGGGGCGCTTCCCGTAGTGAATTCCAAGGTTGTGGAACTAGCTGCCAAA
GCTGGTATTGCCCTGGGATGCTCGATATCAGATTACTGCCGTTTTGACCG
GAAGAACTATTACTACGTTGACACACCGAAGAACTATCAAATTACGCAGG
ATACTTATCCCATCGCCAAGAATGGAAGTTTGCAGCTGGCCACTTTCGGA
AAAAGCATCGGAATAACCCGTTTACATATGGAAGAGGACTCTGCCAAAAT
GACACACGAAGGAGCTGGTGCGGCTGGGCGCCTCACTGACTCAACCCATT
CGCTTCTCGATTTCAACCGCAGTGGGATTCCACTGGTGGAAATTGTAAGT
GAGCCAGATATTCGAACTGGCTCTGAAGCTGCAGCGTACGGCCAAGAGCT
CCAACGTGTTTTGAGATACGTGGGTACCAGTGACTGTAACATGCAGGATG
GAAGTCTTCGTTGTGACGTTAATGTTTCCATTCGACCGAAAGGAAGTACG
GCGTTCGGGACAAAGGTCGAGCTCAAGAACCTCAACTCCTTTGCATCTGC
TCAGAAGTCAATCGACTTTGAAATAGAAAGGCAAGCAAGCATTCTTGAGG
ACGGAGGTACAGTGCTTCTAGAAACAAGAACATGGGATGAGAAGGCAAGC
GAAACAAAGACTATGAGGGTGAAAGAAGGTGCCTCAGATTATAGGTACTT
TCCAGAACCAGACATTCCTCCTCTGCGTATTTCTCATGATCAACTGGAAG
AATGGCGAAACAGCATGCCAGAGCTGCCAGCAGAAAAGCGAGAAAGGTAT
CAGCGCGACTTTGGTCTCTCAGGCTACGATGCCTTTTTGCTCTCCGATGA
TGTGCTCACAGCACGTTATTTTGAGCAATCTATAGATTCTGGAGCAGATC
CGAAGCAAGCGGCGAACTGGATTATGGGGGACATTACAAAAGTATTGAAG
AACGAGAAGATTGACATTAATCTTTGCAAGCTCACTCCTTCAAATCTAGC
CAATATGATCGGCCTCATCGACGATGGAGTTATCAGTGGAAAGATTGCAA
AGGATTTGATATCAGAACTAGTGATGAAAGGTGGTGTTCCATCTGAGATT
GTTGAGGAAAGGTACGTTGCGAAGATGCATTCAATTGCGCTCGCATTGAA
GGCATTTCCAACTCGAGAATGCTCTTTTACTCTTGACGTTTCATTAGACT
TGCAAACTCTTACATTATTCTATTCTCTGTTTGTCTTGAACAGGGATCTT
AAACTGATTTCGGATCCTGACATAATACGAGGGCTGGCAGCAACTGTTAT
TGAAGAAAACCCGAAGGAACTGGCGGCTTTGAAAGATGTACGTGACGACA
TGCCTATCTGCTTCAGAGTTTTCGAATACTGACTCGTTCTGCGTCATGCT
CTGCAGGGGAAAACTCGATTATTTGGATTCTTCGTGGGTAAAACACTGGC
GGCTTCAGGCGGAAAGGGGGACCCCGTTATAATTAACTCAGTTTTGAAAG
AGATGCTAGAATCATAA
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Coding sequence (CDS) from alignment at NODE_795_length_17855_cov_4.297850:6233..7999+

>Gcaud2046.t1 ID=Gcaud2046.t1|Name=Gcaud2046.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1566bp|location=Sequence derived from alignment at NODE_795_length_17855_cov_4.297850:6233..7999+ (Gracilaria caudata M_176_S67 male)
ATGGCTACTACTCAAGCGCCCGAAAAGAAAACCCAAGGTCGCTCCAAGAA
ACGAAGAAATGCATCGGGAAAACGCGAAAAGAAAGGTTCTATGTCTCCTG
GTCTTCTGAAAGCCCTCGAAAAGTATGAGCCGGTTATCGGAATAGAAATG
CACGTGCAGCTTTCCACAAAGACAAAGGCATATTGCAACTGTTCGACGAA
AGCAGTTCGAACTCCGAACACAAACATTTGTCCTGTTTGTATGGGTCATC
CTGGGGCGCTTCCCGTAGTGAATTCCAAGGTTGTGGAACTAGCTGCCAAA
GCTGGTATTGCCCTGGGATGCTCGATATCAGATTACTGCCGTTTTGACCG
GAAGAACTATTACTACGTTGACACACCGAAGAACTATCAAATTACGCAGG
ATACTTATCCCATCGCCAAGAATGGAAGTTTGCAGCTGGCCACTTTCGGA
AAAAGCATCGGAATAACCCGTTTACATATGGAAGAGGACTCTGCCAAAAT
GACACACGAAGGAGCTGGTGCGGCTGGGCGCCTCACTGACTCAACCCATT
CGCTTCTCGATTTCAACCGCAGTGGGATTCCACTGGTGGAAATTGTAAGT
GAGCCAGATATTCGAACTGGCTCTGAAGCTGCAGCGTACGGCCAAGAGCT
CCAACGTGTTTTGAGATACGTGGGTACCAGTGACTGTAACATGCAGGATG
GAAGTCTTCGTTGTGACGTTAATGTTTCCATTCGACCGAAAGGAAGTACG
GCGTTCGGGACAAAGGTCGAGCTCAAGAACCTCAACTCCTTTGCATCTGC
TCAGAAGTCAATCGACTTTGAAATAGAAAGGCAAGCAAGCATTCTTGAGG
ACGGAGGTACAGTGCTTCTAGAAACAAGAACATGGGATGAGAAGGCAAGC
GAAACAAAGACTATGAGGGTGAAAGAAGGTGCCTCAGATTATAGGTACTT
TCCAGAACCAGACATTCCTCCTCTGCGTATTTCTCATGATCAACTGGAAG
AATGGCGAAACAGCATGCCAGAGCTGCCAGCAGAAAAGCGAGAAAGGTAT
CAGCGCGACTTTGGTCTCTCAGGCTACGATGCCTTTTTGCTCTCCGATGA
TGTGCTCACAGCACGTTATTTTGAGCAATCTATAGATTCTGGAGCAGATC
CGAAGCAAGCGGCGAACTGGATTATGGGGGACATTACAAAAGTATTGAAG
AACGAGAAGATTGACATTAATCTTTGCAAGCTCACTCCTTCAAATCTAGC
CAATATGATCGGCCTCATCGACGATGGAGTTATCAGTGGAAAGATTGCAA
AGGATTTGATATCAGAACTAGTGATGAAAGGTGGTGTTCCATCTGAGATT
GTTGAGGAAAGGGATCTTAAACTGATTTCGGATCCTGACATAATACGAGG
GCTGGCAGCAACTGTTATTGAAGAAAACCCGAAGGAACTGGCGGCTTTGA
AAGATGGGAAAACTCGATTATTTGGATTCTTCGTGGGTAAAACACTGGCG
GCTTCAGGCGGAAAGGGGGACCCCGTTATAATTAACTCAGTTTTGAAAGA
GATGCTAGAATCATAA
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