Gcaud2045.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2045.t1
Unique NameGcaud2045.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length220
Homology
BLAST of Gcaud2045.t1 vs. uniprot
Match: A0A2V3J6Q8_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6Q8_9FLOR)

HSP 1 Score: 281 bits (720), Expect = 3.940e-93
Identity = 140/219 (63.93%), Postives = 170/219 (77.63%), Query Frame = 0
Query:    1 MNTPVVVSKELRNCIGGNDITNRSQILADLSKYIRENNLYVDGESKRVLCDERLSSLLNVVGEVDFWDLFRRLKPHLTDPSDLGPEYESRAIMFFEKYLKQRGALASWLAPPRRKDPRGANSAAAQRQLRKHRQGMFAEVHIEPCLRPLCDGKSRLPRPEVLKSVWVFIKKNNLQVATNRRRIRVTETLRDALRLPNVEWIDSFRLGSYVFKLTSKREQ 219
            MN P+V+S ELR   G  +I+NRSQ+L+++ KYIR NNLY     K V+CD  LS+LLN  G + F D+ R +K HLTDPS++GPEYE+RAI FFEKYL  RGALASW AP R KDPRG NSA AQR+LR+  QGMFAEV+IE CLRPLC+G + + RP +LKSVW +IK NNLQ  + RRRI V+ETLRDALRLP+VEWID+F+LG YVFKLTS R +
Sbjct:   30 MNAPLVLSDELRALTGLGEISNRSQVLSEIGKYIRANNLYAMEGRKFVVCDSLLSALLNTEGTILFQDIQRFIKHHLTDPSEMGPEYEARAIDFFEKYLAARGALASWHAPHRTKDPRGLNSAEAQRRLRERGQGMFAEVYIEQCLRPLCNGNTYMSRPAILKSVWAYIKNNNLQDPSKRRRILVSETLRDALRLPDVEWIDTFQLGGYVFKLTSSRRK 248          
BLAST of Gcaud2045.t1 vs. uniprot
Match: R7QDF0_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QDF0_CHOCR)

HSP 1 Score: 80.5 bits (197), Expect = 1.550e-14
Identity = 54/179 (30.17%), Postives = 95/179 (53.07%), Query Frame = 0
Query:    4 PVVVSKELRNCIGGNDITNRSQILADLSKYIRENNLYVDGESKRVLCDERLSSLLNVVGEVDFWDLFRRLKPHLTDPSDLGPEYESRAIMFFEKYLKQRGALASW-------LAPPRRKDPRGANSAAAQRQLRKHRQGMFAEVHIEPCLRPLCDGKSRLPRPEVLKSVWVFIKKNNLQ 175
            P+V S++L   +  +    RS +L  LSKY++++ L    + + VLCD++L  LL V  +    ++ + + PHL+ P  +G +Y   A  F E+YL+ + A A+        L P + +  R  +    + + +  R  +F  V + P L  +C  K  +PR E++K+VW +I+ NNLQ
Sbjct:   70 PMVPSRDLLQFVE-DKAQPRSVVLKSLSKYVKDHELQDPNDRRIVLCDDKLKKLLGVE-KCTILEMSKYITPHLSKPETVGGKYLEDAGKFEEEYLRVKAAEAAERLENGEPLKPVKGRKKRRVSKTNTEDKTKGRR--LFKPVLLSPDLAAVCR-KQEMPRHEIVKAVWEYIRLNNLQ 243          
BLAST of Gcaud2045.t1 vs. uniprot
Match: A0A3L6SE56_PANMI (Uncharacterized protein n=1 Tax=Panicum miliaceum TaxID=4540 RepID=A0A3L6SE56_PANMI)

HSP 1 Score: 74.3 bits (181), Expect = 2.340e-12
Identity = 50/192 (26.04%), Postives = 96/192 (50.00%), Query Frame = 0
Query:    7 VSKELRNCIGGNDITNRSQILADLSKYIRENNLYVDGESKRVLCDERLSSLLNVVGEVDFWDLFRRLKPHLTDPSDLGPEYESRAIMFFEKYLKQRGALASWLAPPRRKDPRGANSAAAQRQLRKHRQGMFAEVHI-EPCLRPLCDGKSRLPRPEVLKSVWVFIKKNNLQVATNRRRIRVTETLRDALRLPN 197
            +S  L+  +G +++  R++++  L  YIRENNL      +++L DERL  + NV   +D + + + L  H+   +  GP    R+    +   + R            K  +G +S +          G+   + + +  ++ +  G+S L R +V+K +W +IK+NNLQ  ++RR+I   E L+D L++ +
Sbjct:   80 LSPALQEFVGASELA-RTEVVKKLWAYIRENNLQDQSNKRKILPDERLKKIFNV-NSIDMFQMNKALTKHIWPLNSEGPASPDRSAPKEKPQKRDRNE---------GKKQKGGSSGSGS--------GLLVPLQLSDDLVKFIGTGESMLSRSDVVKRMWEYIKENNLQDPSDRRKIICDEKLKDLLQVES 252          
BLAST of Gcaud2045.t1 vs. uniprot
Match: A0A2Z7BRD1_9LAMI (Uncharacterized protein n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7BRD1_9LAMI)

HSP 1 Score: 72.4 bits (176), Expect = 2.000e-11
Identity = 61/208 (29.33%), Postives = 95/208 (45.67%), Query Frame = 0
Query:    7 VSKELRNCIGGNDITNRSQILADLSKYIRENNLYVDGESKRVLCDERLSSLLNVVGEVDFWDLFRRLKPHLTDPSDLGPEYESRAIMFFEKYLKQRGALASWLAPPRRKDPRGANSAAAQRQLRKHRQGMFAEVHIEPCL-RPLCDGKSRLPRPEVLKSVWVFIKKNNLQVATNRRRIRVTETLRDALRLPNVEWIDSFRLGSYVFKL 213
            +S EL    G  ++  R++++  L  YIRENNL      + ++CD+ L +L  V   +D + + + L  H+      G    S      EK  KQ                RG NSA            + A + +   L + L  G+  LPRP+V+K +W +IK+NNLQ  ++RR+I   E L++         +D+FR G  V KL
Sbjct:  138 LSPELEKFTGVPELA-RTEVVKQLWSYIRENNLQDPSNRRNIICDDTLRNLFGV-HSIDMFQMNKALTKHIFQLDSSGAAVISTPK---EKPRKQXXXXXXXXXXXXXXRQRGGNSA------------ILAPLKLSDALVKFLGTGEGELPRPDVIKRIWDYIKQNNLQDPSDRRQIICDEKLKELFD------VDTFR-GFSVAKL 321          
BLAST of Gcaud2045.t1 vs. uniprot
Match: UPI00098E01B3 (upstream activation factor subunit spp27-like n=1 Tax=Asparagus officinalis TaxID=4686 RepID=UPI00098E01B3)

HSP 1 Score: 72.0 bits (175), Expect = 2.310e-11
Identity = 54/205 (26.34%), Postives = 104/205 (50.73%), Query Frame = 0
Query:    7 VSKELRNCIGGNDITNRSQILADLSKYIRENNLYVDGESKRVLCDERLSSLLNVVGEVDFWDLFRRLKPHL----TDPSDLGPEYESRAIMFFEKYLKQRGALASWLAPPRRKDPRGANSAAAQRQLRKHRQGMFAEVHIEPCLRPLCDGKSRLPRPEVLKSVWVFIKKNNLQVATNRRRIRVTETLRDALRLPNVEWIDSFRLG 207
            +S +L+  +G  ++  R++++  +  YIREN+L      +++LCDER+ +L NV  ++D + + + L  H+    ++   + P  + R      K  K+R A  S  +P + K  +G+    A  QL             +  ++ +  G++ LPR +V+K +W +IK+NNLQ   ++R I   E L++   L  V++   F + 
Sbjct:  118 LSPQLQEFLGETELA-RTEVVKRIWAYIRENSLQDPSNRRKILCDERMQNLFNVK-KIDMFQMNKALSKHIWPLDSEAGSIKPAQKER------KPKKEREA--SDESPRKGKRQKGSTGFLAPLQLS------------DALMKFIGTGETELPRSDVVKRIWDYIKENNLQDPADKRNIICDEKLKE---LFEVDYFTGFTVS 297          
BLAST of Gcaud2045.t1 vs. uniprot
Match: K4ACD5_SETIT (Uncharacterized protein n=19 Tax=Panicoideae TaxID=147369 RepID=K4ACD5_SETIT)

HSP 1 Score: 72.0 bits (175), Expect = 2.750e-11
Identity = 51/192 (26.56%), Postives = 95/192 (49.48%), Query Frame = 0
Query:    7 VSKELRNCIGGNDITNRSQILADLSKYIRENNLYVDGESKRVLCDERLSSLLNVVGEVDFWDLFRRLKPHLTDPSDLGPEYESRAIMFFEKYLKQRGALASWLAPPRRKDPRGANSAAAQRQLRKHRQGMFAEVHIEPCL-RPLCDGKSRLPRPEVLKSVWVFIKKNNLQVATNRRRIRVTETLRDALRLPN 197
            +S  L+  +G +++  R++++  L  YIRE+NL      +++L DERL  + NV   +D + + + L  H+   +  GP    R+    +   + R            K  +G +S A          G+   + +   L + +  G+S L R +V+K +W +IK+NNLQ  ++RR+I   E L+D L++ +
Sbjct:  142 LSPALQEFVGASELA-RTEVVKKLWAYIREHNLQDQSNKRKILPDERLRKIFNV-NSIDMFQMNKALTKHIWPLNSEGPVSPDRSTPKEKPQKRDRNE---------GKKQKGGSSGAGS--------GLLVPLQLSNDLVKFIGTGESMLSRSDVVKRMWEYIKENNLQDPSDRRKIICDEKLKDLLQVES 314          
BLAST of Gcaud2045.t1 vs. uniprot
Match: A0A6P6TDX7_COFAR (upstream activation factor subunit spp27-like n=3 Tax=Coffea TaxID=13442 RepID=A0A6P6TDX7_COFAR)

HSP 1 Score: 71.6 bits (174), Expect = 3.540e-11
Identity = 49/178 (27.53%), Postives = 86/178 (48.31%), Query Frame = 0
Query:   23 RSQILADLSKYIRENNLYVDGESKRVLCDERLSSLLNVVGEVDFWDLFRRLKPHLTDPSDLGPEYESRAIMFFEKYLKQRGALASWLAPPRRKDPRGANSAAAQRQLRKHRQGMFAEVHIEPCL-RPLCDGKSRLPRPEVLKSVWVFIKKNNLQVATNRRRIRVTETLRDALRLPNVE 199
            R++++  L  YIRENNL      + +LCD  L  L  V   ++ + + + L  H+       P   + ++    K  +++   A  +  P+RK+ R     +          G  A + +   L + L  G+S LPR +V+K +W +IK+NNLQ  ++RRRI   E L++   + N +
Sbjct:  146 RTEVVKQLWSYIRENNLQDPSNRRNILCDGTLRDLFGV-DSINMFQMNKALAQHIW------PLETNASVSSTPKEKQRKQERAEEMDEPKRKEKRHKGGTS----------GFLAPLPLSDALVKFLGTGESALPRSDVVKRIWDYIKQNNLQDPSDRRRILCDEKLKELFDVDNFQ 306          
BLAST of Gcaud2045.t1 vs. uniprot
Match: UPI001CC5CEDB (upstream activation factor subunit spp27-like isoform X1 n=2 Tax=Telopea speciosissima TaxID=54955 RepID=UPI001CC5CEDB)

HSP 1 Score: 70.1 bits (170), Expect = 1.290e-10
Identity = 60/208 (28.85%), Postives = 103/208 (49.52%), Query Frame = 0
Query:    7 VSKELRNCIGGNDITNRSQILADLSKYIRENNLYVDGESKRVLCDERLSSLLNVVGEVDFWDLFRRLKPHLTDPSDLGPEYESRAIMFFEKYLKQRGALASWLAPPRRKDPRGANSAAAQRQLRKHRQGMFAEVHIEPCL-RPLCDGKSRLPRPEVLKSVWVFIKKNNLQVATNRRRIRVTETLRDALRLPNVEWIDSFRLGSYVFKL 213
            +S +L+  +G  ++  R++++  +  YIRENNL      + ++CDE L  L  V  +++ + + + L  H+  P D   + ++R+    EK  KQ        A P+ K  +G NS            G  A + +   L + +  G+S L R +V+K +W +IK+NNLQ  +++RRI   E L++         +DSF  G  V KL
Sbjct:  137 MSPQLQKFVGVPELA-RTEVVKQIWAYIRENNLQDPKNRQNIICDETLHELFRV-DKINMFQMNKALSKHIW-PLD-SEDAQARSTPK-EKQRKQERKQGPNDAKPKEKRQKGGNS------------GFLAPLQLSDSLVKFIGTGESALSRADVVKRMWEYIKQNNLQDPSDKRRIICDEKLKELFE------VDSFH-GFTVSKL 320          
BLAST of Gcaud2045.t1 vs. uniprot
Match: A0A0A0LJW7_CUCSA (Uncharacterized protein n=1 Tax=Cucumis sativus TaxID=3659 RepID=A0A0A0LJW7_CUCSA)

HSP 1 Score: 70.1 bits (170), Expect = 1.310e-10
Identity = 59/212 (27.83%), Postives = 104/212 (49.06%), Query Frame = 0
Query:    7 VSKELRNCIGGNDITNRSQILADLSKYIRENNLYVDGESKRVLCDERLSSLLNVVGEVDFWDLFRRLKPHL--TDPSDLGPEYESRAIMFFEKYLKQRGALASWLAPPRRK--DPRGANSAAAQRQLRKHRQGMFAEVHIEPCLRP-LCDGKSRLPRPEVLKSVWVFIKKNNLQVATNRRRIRVTETLRDALRLPNVEWIDSFRLGSYVFKL 213
            +S +L+  IG  ++  R++++  L  +IRENNL      + +LCDE L +L  V   ++ + + + L  H+   + +D+ P   S+     EK  K++               +    +SA   ++ +K + G  A + +   L   L  G+  LPR +V+K +W +IK+NNLQ  +++RRI   E L++         +DSF  G  V KL
Sbjct:  124 LSPQLQEFIGAPEMA-RTEVVKQLWNHIRENNLQDPSNRRNILCDEPLKALFGV-NSINMFQMNKALSKHIWPLESNDVIPAKSSQK----EKPQKEKXXXXXXXXXXXXXXXEEDSDDSAREDKRQKKGKSGFLAPLPLSNALVAFLGTGEDALPRSDVVKRMWDYIKQNNLQDPSDKRRIICDERLKELFD------VDSFN-GFTVSKL 322          
BLAST of Gcaud2045.t1 vs. uniprot
Match: A0A4D9A1X0_SALSN (Upstream activation factor subunit UAF30 n=3 Tax=Salvia splendens TaxID=180675 RepID=A0A4D9A1X0_SALSN)

HSP 1 Score: 70.1 bits (170), Expect = 1.330e-10
Identity = 58/216 (26.85%), Postives = 103/216 (47.69%), Query Frame = 0
Query:    7 VSKELRNCIGGNDITNRSQILADLSKYIRENNLYVDGESKRVLCDERLSSLLNVVGEVDFWDLFRRLKPHLTDPSDLGPEYESRAIMFFEKYLKQRGALASWLAPPRRKDPR--GANSAAAQRQLRKHRQGMFAEVHIEPCL-RPLCDGKSRLPRPEVLKSVWVFIKKNNLQVATNRRRIRVTETLRDALRLPNVEWIDSFRLGSYVFKLTSKREQ 219
            +S EL+   G  ++  R++++  L  +I+ENNL      K ++CD+ L+ L  V   +D + + + L  H+  P D      + ++    K  +++         P+RK  R  G NSA              A + +   L + L  G+S LPR +V+K +W +IK NNLQ  +++R+I   E L++   L N++    F +  ++     K EQ
Sbjct:  138 LSPELQKFTGVPELA-RTEVVKQLWVHIKENNLQDPSNRKSIICDDTLNKLFGV-DTIDMFQMNKALTKHIW-PLDSDGASVAASVDSAPKVKQKKXXXXXXXXXPKRKGKRQRGGNSA------------FLAPIKLSDALVKFLGTGESALPRSDVVKRIWDYIKLNNLQDPSDKRQILCDEKLKE---LFNLDTFCGFTVSKHLTAHFIKTEQ 335          
The following BLAST results are available for this feature:
BLAST of Gcaud2045.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J6Q8_9FLOR3.940e-9363.93Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QDF0_CHOCR1.550e-1430.17Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A3L6SE56_PANMI2.340e-1226.04Uncharacterized protein n=1 Tax=Panicum miliaceum ... [more]
A0A2Z7BRD1_9LAMI2.000e-1129.33Uncharacterized protein n=1 Tax=Dorcoceras hygrome... [more]
UPI00098E01B32.310e-1126.34upstream activation factor subunit spp27-like n=1 ... [more]
K4ACD5_SETIT2.750e-1126.56Uncharacterized protein n=19 Tax=Panicoideae TaxID... [more]
A0A6P6TDX7_COFAR3.540e-1127.53upstream activation factor subunit spp27-like n=3 ... [more]
UPI001CC5CEDB1.290e-1028.85upstream activation factor subunit spp27-like isof... [more]
A0A0A0LJW7_CUCSA1.310e-1027.83Uncharacterized protein n=1 Tax=Cucumis sativus Ta... [more]
A0A4D9A1X0_SALSN1.330e-1026.85Upstream activation factor subunit UAF30 n=3 Tax=S... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019835SWIB domainSMARTSM00151swib_2coord: 1..82
e-value: 9.2E-4
score: 20.7
coord: 136..219
e-value: 0.044
score: 3.0
IPR036885SWIB/MDM2 domain superfamilyGENE3D1.10.245.10SWIB/MDM2 domaincoord: 1..86
e-value: 3.9E-14
score: 54.4
coord: 130..219
e-value: 6.1E-10
score: 41.0
IPR036885SWIB/MDM2 domain superfamilySUPERFAMILY47592SWIB/MDM2 domaincoord: 142..207
IPR036885SWIB/MDM2 domain superfamilySUPERFAMILY47592SWIB/MDM2 domaincoord: 3..86
IPR003121SWIB/MDM2 domainPFAMPF02201SWIBcoord: 140..193
e-value: 1.1E-9
score: 38.0
coord: 4..77
e-value: 3.5E-13
score: 49.2
IPR003121SWIB/MDM2 domainPROSITEPS51925SWIB_MDM2coord: 1..79
score: 16.445148
NoneNo IPR availablePANTHERPTHR13844SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY Dcoord: 122..206
NoneNo IPR availablePANTHERPTHR13844SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY Dcoord: 7..78
NoneNo IPR availablePANTHERPTHR13844:SF53SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEINcoord: 122..206
NoneNo IPR availablePANTHERPTHR13844:SF53SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEINcoord: 7..78
NoneNo IPR availableCDDcd10567SWIB-MDM2_likecoord: 152..212
e-value: 6.2075E-12
score: 57.1681
NoneNo IPR availableCDDcd10567SWIB-MDM2_likecoord: 5..77
e-value: 1.37771E-10
score: 53.7013

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_795_length_17855_cov_4.297850contigNODE_795_length_17855_cov_4.297850:4675..5334 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2045.t1Gcaud2045.t1Gracilaria caudata M_176_S67 malemRNANODE_795_length_17855_cov_4.297850 4675..5334 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2045.t1 ID=Gcaud2045.t1|Name=Gcaud2045.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=220bp
MNTPVVVSKELRNCIGGNDITNRSQILADLSKYIRENNLYVDGESKRVLC
DERLSSLLNVVGEVDFWDLFRRLKPHLTDPSDLGPEYESRAIMFFEKYLK
QRGALASWLAPPRRKDPRGANSAAAQRQLRKHRQGMFAEVHIEPCLRPLC
DGKSRLPRPEVLKSVWVFIKKNNLQVATNRRRIRVTETLRDALRLPNVEW
IDSFRLGSYVFKLTSKREQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019835SWIB_domain
IPR036885SWIB_MDM2_dom_sf
IPR003121SWIB_MDM2_domain