Gcaud2048.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2048.t1
Unique NameGcaud2048.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length255
Homology
BLAST of Gcaud2048.t1 vs. uniprot
Match: A0A2V3J428_9FLOR (Ribosome maturation protein SDO1-like n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J428_9FLOR)

HSP 1 Score: 361 bits (927), Expect = 5.600e-124
Identity = 183/227 (80.62%), Postives = 207/227 (91.19%), Query Frame = 0
Query:    1 MPEMLVRLKKGKKTYEVMVEEGMVPKYREGSVKRIEDVVVTPVVFVNASKGTKASSEQLNDSFQTDDVMAIIELILQKGEAQESAGERKSKMDAKRQEIINAIQKNYVSPEGTPLPVMRIENALEQVRPRIDVDVDAARQVTAMYQKLSAVMPMKKSSSGLEGTVTVPTHFAGQVSGIVRKHCTVLRETYRDKAKYDVEIHAYDQLMSDLARATKGDFEFSMTTNAA 227
            MP+MLVRLKKGKKTYEV+V EGMV KYR+G+VKRIEDVVVTP+VF N++KG+KASSEQL+DSFQT DVM +I+LILQKGEAQESAGERKSKMDAKRQEII+ IQKNY++P+G PLPV+RIENALEQ+RPRIDVDVDA RQVTAMY KLSAVMPMKK+S G+EGTV V T  AGQVSGI+RKH TVLRE+Y DKAKYDV+IH+YD LM DLAR TKGDFEFS+ TNAA
Sbjct:    1 MPDMLVRLKKGKKTYEVLVVEGMVAKYRDGTVKRIEDVVVTPIVFTNSTKGSKASSEQLSDSFQTSDVMEVIKLILQKGEAQESAGERKSKMDAKRQEIISVIQKNYIAPDGRPLPVVRIENALEQIRPRIDVDVDAERQVTAMYSKLSAVMPMKKNSGGMEGTVIVSTALAGQVSGIIRKHATVLRESYSDKAKYDVDIHSYDLLMKDLARVTKGDFEFSLATNAA 227          
BLAST of Gcaud2048.t1 vs. uniprot
Match: A0A7S3A2T3_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3A2T3_9RHOD)

HSP 1 Score: 186 bits (472), Expect = 6.040e-55
Identity = 103/226 (45.58%), Postives = 143/226 (63.27%), Query Frame = 0
Query:    1 MPEMLVRLKKGKKTYEVMVEEGMVPKYREGSVKRIEDVVVTPVVFVNASKGTKASSEQLNDSFQTDDVMAIIELILQKGEAQESAGERKSKMDAKRQEIINAIQKNYVSPEGT-PLPVMRIENALEQVRPRIDVDVDAARQVTAMYQKLSAVMPMKKSSSGLEGTVTVPTHFAGQVSGIVRKHCTVLRETYRDKAK---YDVEIHAYDQLMSDLARATKGDFEFSM 222
            MP+MLVR KKGK  +E++ +EG V +YR+G++K  +DVVV  V+F N SKG +AS EQL  +F TDD+   +E IL  GE Q S  ERK+K++ KR+EI++  +K YV P    PLP  RI+ AL Q + R+D D  AARQ      K+ AVMPM KS+  L+GT+ +P  + G   G V K+C V+++ Y  +       V    YD L+SDL +ATKG+F F +
Sbjct:    1 MPDMLVRYKKGKTNFEIVTKEGKVSQYRDGTIKNTDDVVVANVIFTNHSKGERASDEQLRSAFDTDDLSQCLEKILLTGEPQLSVAERKAKVEQKRKEIVDYFRKYYVEPRTKLPLPAQRIDAALTQAKIRVDPDTPAARQAADAASKVVAVMPMSKST--LDGTIKIPHQYIGSAMGSVSKYCQVVKDGYTSEGSSITVSVAPGDYDMLISDLTKATKGNFTFDI 224          
BLAST of Gcaud2048.t1 vs. uniprot
Match: A0A1X6NJU9_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NJU9_PORUM)

HSP 1 Score: 166 bits (421), Expect = 8.120e-47
Identity = 101/224 (45.09%), Postives = 138/224 (61.61%), Query Frame = 0
Query:    4 MLVRLKKGKKTYEVMVEEGMVPKYREGSVKRIEDVVVTPVVFVNASKGTKASSEQLNDSFQTDDVMA-IIELILQKGEAQESAGERKSKMDAKRQEIINAIQKNYVSPE-GTPLPVMRIENALEQVRPRIDVDVDAARQVTAMYQKLSAVMPMKKSSSGLEGTVTVPTHFAGQVSGIVRKHCTVLRETYR-DKAKYDVEI--HAYDQLMSDLARATKGDFEFSM 222
            MLVR K GK T+E++  EG   KYR G +  I+DVVVT  VF N SKG +AS +QL  +F  D   A I++ I+ KG+ Q SA ER +K D +R+E++  + K YV P    P+P+ R ENAL Q++ RID D  A RQ   + +KL  VMPM+K +  +EG + VP    G  +G++ KH  + RE +     KYD+ +   AYD LMS LA+ATKGDF F +
Sbjct:    1 MLVRRKVGKTTFELLTHEGAAAKYRAGDLSSIDDVVVTDTVFTNQSKGQRASQDQLTAAFGEDATPASILKAIISKGDLQTSAAERTAKADQRRREVLEHLTKYYVDPSRNLPIPLTRFENALTQIKARID-DRPADRQAEELVRKLVDVMPMRKLT--MEGVLRVPHAHLGAAAGVIIKHAKINREGHEAGGVKYDISVVPGAYDGLMSALAKATKGDFTFEL 221          
BLAST of Gcaud2048.t1 vs. uniprot
Match: M1VF53_CYAM1 (Uncharacterized protein n=2 Tax=cellular organisms TaxID=131567 RepID=M1VF53_CYAM1)

HSP 1 Score: 164 bits (415), Expect = 2.200e-46
Identity = 101/230 (43.91%), Postives = 142/230 (61.74%), Query Frame = 0
Query:    3 EMLVRLKKGKKTYEVMVEEGMVPKYREGSVKRIEDVVVTPVVFVNASKGTKASSEQLNDSF-QTDDVMAIIELILQKGEAQESAGERKSKMDAKRQEIINAIQKNYVSPEG-TPLPVMRIENALEQVRPRIDVDVDAARQVTAMYQKLSAVMPMKKSSSGLEGTVTVPTHFAGQVSGIVRKHCTVLRETYRDK-AKYDVEIHA--YDQLMSDLARATKGDFEFSMTTNAA 227
            EMLVR + GK+T+EV    G V KYREG++K +++V+V+ VVF +  K  +AS  +L   F +  +   +++ IL+KG+ Q SA ER+ K++ KR EII  + KN+V P+   P+P MRIE ALE VRPRID+D  A RQV  M  KLSA MPMKK    +EGT+ VP    G  + ++R +CTV RE Y  + A  ++ I    YD  +  L  A+KG+F   +   AA
Sbjct:    4 EMLVRYRSGKETFEVATHPGAVTKYREGTLKSLDEVLVSDVVFTDYHKRLRASELELKSVFGENYNKEEVLDKILRKGDFQLSAAERRQKLEQKRNEIIEYVHKNFVDPKTHLPIPRMRIEQALETVRPRIDMDQSADRQVALMMSKLSACMPMKKHQ--VEGTLRVPHGVLGASNAVIRSYCTVAREHYTSEGAVLEIMISPGDYDAFIKALNNASKGNFHLDIAGAAA 231          
BLAST of Gcaud2048.t1 vs. uniprot
Match: A0A7J7IF00_9RHOD (Uncharacterized protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IF00_9RHOD)

HSP 1 Score: 159 bits (403), Expect = 1.380e-44
Identity = 97/225 (43.11%), Postives = 138/225 (61.33%), Query Frame = 0
Query:    3 EMLVRLKKGKKTYEVMVEEGMVPKYREGSVKRIEDVVVTPVVFVNASKGTKASSEQLNDSF-QTDDVMAIIELILQKGEAQESAGERKSKMDAKRQEIINAIQKNYVSPEGT-PLPVMRIENALEQVRPRIDVDVDAARQVTAMYQKLSAVMPMKKSSSGLEGTVTVPTHFAGQVSGIVRKHCTVLRETYRDK-AKYDVEIHA--YDQLMSDLARATKGDFEFSM 222
            EMLVR +  K  +EV    G V KYREG ++ +EDV+VT V+F +  KG +AS ++L  +F +      ++E I+++G+ Q SA ER+ K++ KR EII  I KN+V P+   PLP MR+E ALE + PRID+D+ A RQV  +  KL   MPMKK    +EGT+ +P    G  + IVR +CTV RE Y  + A  D+ I    YD  +  L +A+KG+F F +
Sbjct:    4 EMLVRFRHNKYNFEVATVPGTVTKYREGLLRSLEDVLVTDVIFTDYHKGARASDKELQSAFGEGFKKEEVLERIVRRGDFQLSASERRQKLEQKRNEIIEYIHKNFVDPKSRLPLPRMRVEQALETIHPRIDMDLPADRQVAQLMSKLVVCMPMKKHQ--VEGTLRLPHSVLGASNAIVRSYCTVSREHYTGEGAVLDIMIAPGDYDAFIKALNQASKGNFHFDV 226          
BLAST of Gcaud2048.t1 vs. uniprot
Match: Q3HWW0_RECAM (Shwachman-Bodian-Diamond protein-like protein (Fragment) n=1 Tax=Reclinomonas americana TaxID=48483 RepID=Q3HWW0_RECAM)

HSP 1 Score: 157 bits (397), Expect = 7.820e-44
Identity = 96/220 (43.64%), Postives = 133/220 (60.45%), Query Frame = 0
Query:    6 VRLKKGKKTYEVMVEEGMVPKYREGSVKRIEDVVVTPVVFVNASKGTKASSEQLNDSFQTDDVMAIIELILQKGEAQESAGERKSKMDAKRQEIINAIQKNYVSPEGT-PLPVMRIENALEQVRPRIDVDVDAARQVTAMYQKLSAVMPMKKSSSGLEGTVTVPTHFAGQVSGIVRKHCTVLRETYRDKAKYDVEIHA--YDQLMSDLARATKGDFEFSM 222
            V+LKKG KT+E++V    V  YREG +  ++ V+V+  +F NASKG +A +E L  +F TD     I  IL  GE Q+S  ER+ K+D KRQ+II  I +NYV P+   P P MR+E A E+ +P+ID +V A RQ   + ++L  ++   K +  LEG+VTVPT   G  S I+ K C V  ETY D   Y V +    +D  M DL RAT G+FEF++
Sbjct:   11 VKLKKGGKTFELLVHPDSVEPYREGKLS-VDQVLVSDEIFSNASKGDRAKAEDLQAAFGTDVKATCIASILATGEFQQSTEERRRKVDEKRQQIIGYIARNYVDPKTRLPHPAMRVELAFEEAKPKIDPEVPAERQAPDILKRLQGLLSFAKIAD-LEGSVTVPTKHIGVASSILYKWCRVGNETYGDGCVYXVALAPADFDAFMVDLTRATGGEFEFNI 228          
BLAST of Gcaud2048.t1 vs. uniprot
Match: Q3HWV6_MALJA (Shwachman-Bodian-Diamond protein-like protein (Fragment) n=1 Tax=Malawimonas jakobiformis TaxID=136089 RepID=Q3HWV6_MALJA)

HSP 1 Score: 132 bits (331), Expect = 1.830e-34
Identity = 77/187 (41.18%), Postives = 114/187 (60.96%), Query Frame = 0
Query:    5 LVRLKKGKKTYEVMVEEGMVPKYREGSVKRIEDVVVTPVVFVNASKGTKASSEQLNDSFQTDDVMAIIELILQKGEAQESAGERKSKMDAKRQEIINAIQKNYVSPEG-TPLPVMRIENALEQVRPRIDVDVDAARQVTAMYQKLSAVMPMKKSSSGLEGTVTVPTHFAGQVSGIVRKHCTVLRETY 190
            LVR + GK T+EVM   G V KYR+  +  +++V+   VV+ N SKG +A   +L ++F T+D+M  I +IL KGE Q +A ER+ + D KR+EI+  + K Y  P   TP P+ RI+ AL +++ R+D D+ A RQ     +KL  V+P+K+S   + GT++VP    G V GI+ K   V  ETY
Sbjct:    6 LVRYRHGKNTFEVMTNVGSVQKYRDQKLG-LDNVLQADVVWTNQSKGERAKGAELKETFNTEDIMECIRVILAKGEIQLTAAERREQTDQKRREIVYYVHKYYTDPRAKTPHPIARIDAALTEIKFRVDPDIPAERQAQDALKKLVEVIPLKRSE--IVGTLSVPIKALGAVQGILSKGVEVSGETY 189          
BLAST of Gcaud2048.t1 vs. uniprot
Match: L8HCP3_ACACA (rRNA metabolism protein, SBDS family n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HCP3_ACACA)

HSP 1 Score: 131 bits (330), Expect = 1.440e-33
Identity = 81/224 (36.16%), Postives = 131/224 (58.48%), Query Frame = 0
Query:    5 LVRLKKGKK-TYEVMVEEGMVPKYREGSVKRIEDVVVTPVVFVNASKGTKASSEQLNDSFQTDDVMAIIELILQKGEAQESAGERKSKMDAKRQEIINAIQKNYVSPEG-TPLPVMRIENALEQVRPRIDVDVDAARQVTA-MYQKLSAVMPMKKSSSGLEGTVTVPTHFAGQVSGIVRKHCTVLRETYRDKA---KYDVEIHAYDQLMSDLARATKGDFEFSM 222
            +VR K G   T+EV+ ++G   ++REG +    +V+    ++ N SKG +A    L  +F T ++    +++++KGE Q +A ER+ K++ ++ E+IN I K Y+ P   TP PV+RIENA EQ++  +D DV A RQV   + +KL  ++P+K+S   + GT+++PT   GQ  G V+K+  V  E Y   A   +  +    YD  M+DL   TKG+F F +
Sbjct:    7 VVRYKAGDTGTFEVLTKKGAALQFREGKLG-FSNVLFADEIYTNHSKGERAKEADLLKAFGTSNIEDCAKVVVEKGELQLTAAERREKVNKRKAEMINYIHKYYIDPRTKTPHPVVRIENAFEQMKVNVDPDVPAERQVQEKVLKKLPEILPIKRSE--MSGTLSIPTKVIGQAMGTVKKYAQVSGENYSSGAATMQVSIVPGDYDAFMTDLRNVTKGEFTFDV 227          
BLAST of Gcaud2048.t1 vs. uniprot
Match: A0A6B2L9Q9_9EUKA (Uncharacterized protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L9Q9_9EUKA)

HSP 1 Score: 131 bits (329), Expect = 7.300e-33
Identity = 78/223 (34.98%), Postives = 134/223 (60.09%), Query Frame = 0
Query:    5 LVRLKKGKKTYEVMVEEGMVPKYREGSVKRIEDVVVTPVVFVNASKGTKASSEQLNDSFQTDDVMAIIELILQKGEAQESAGERKSKMDAKRQEIINAIQKNYVSPEG-TPLPVMRIENALEQVRPRIDVDVDAARQVTAMYQKLSAVMPMKKSSSGLEGTVTVPTHFAGQVSGIVRKHCTVLRETY--RDKAKYDVEIHA--YDQLMSDLARATKGDFEFSM 222
            +VR K+GK T+EV  + G V KYR+    ++ D+++T  ++ +  K  +AS  +L DSF       +++ IL+KG  Q + GERK  ++ KR EIIN I K Y+ P+  T +PV RI+NAL +V+ RID D+    QV  + +KL  V+ +K++   + G V     F   V+G+ +++   +R+ +   + A++ + +    YD+++SDL  ATKG+F+F++
Sbjct:    3 VVRYKQGKHTFEVGCKVGSVMKYRKTGQGQLNDILITKDIWKDIKKADRASEHELEDSFGKIPHDEMLKAILEKGHLQLTDGERKEILEKKRNEIINYIHKYYIDPKTKTMIPVARIDNALNEVKARIDPDIATETQVQEILKKLPGVLTLKRAE--ITGVVKTTHQFIANVTGVFKRYNIAIRQEHFSSEGAEFSISMVPGDYDKVISDLNTATKGEFDFAV 223          
BLAST of Gcaud2048.t1 vs. uniprot
Match: A0A497FLW0_9CREN (Ribosome assembly factor SBDS n=1 Tax=Thermoprotei archaeon TaxID=2250277 RepID=A0A497FLW0_9CREN)

HSP 1 Score: 115 bits (288), Expect = 1.030e-27
Identity = 69/199 (34.67%), Postives = 113/199 (56.78%), Query Frame = 0
Query:    3 EMLVRLKKGKKTYEVMVEEGMVPKYREGSVKRIEDVVVTPVVFVNASKGTKASSEQLNDSFQTDDVMAIIELILQKGEAQESAGERKSKMDAKRQEIINAIQKNYVSPE-GTPLPVMRIENALEQVRPRIDVDVDAARQVTAMYQKLSAVMPMKKSSSGLEGTVTVPTHFAGQVSGIVRKHCTVLRETYRDKAKYDVEI 200
            E++ R ++G K +E +V       ++EG +  I DV+V  +++ +A KG KAS+E L  +F TDDV  I   I+++G  Q +A +R+  ++AKR++II  + +N + P  G P P  RIE ALEQ R  ID       QV  + +K+  ++P+K + + L   V +P  + G+  G++ K   VLR TY+      +EI
Sbjct:    7 EVIARFERGGKRFEAIVYANKAWLFKEGKINNIRDVLVGDIIYYDARKGLKASTEDLRKTFGTDDVYKIAAEIIRRGNLQLTAQQRRELIEAKRRQIIEFLSRNSIDPRTGLPHPPTRIELALEQARVGIDPFKPVEYQVQEILKKIQRILPLKLARARLG--VKIPPQYVGKAYGVLMKIGRVLRSTYQSDGSLIMEI 203          
The following BLAST results are available for this feature:
BLAST of Gcaud2048.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J428_9FLOR5.600e-12480.62Ribosome maturation protein SDO1-like n=1 Tax=Grac... [more]
A0A7S3A2T3_9RHOD6.040e-5545.58Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
A0A1X6NJU9_PORUM8.120e-4745.09Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
M1VF53_CYAM12.200e-4643.91Uncharacterized protein n=2 Tax=cellular organisms... [more]
A0A7J7IF00_9RHOD1.380e-4443.11Uncharacterized protein n=1 Tax=Cyanidiococcus yan... [more]
Q3HWW0_RECAM7.820e-4443.64Shwachman-Bodian-Diamond protein-like protein (Fra... [more]
Q3HWV6_MALJA1.830e-3441.18Shwachman-Bodian-Diamond protein-like protein (Fra... [more]
L8HCP3_ACACA1.440e-3336.16rRNA metabolism protein, SBDS family n=1 Tax=Acant... [more]
A0A6B2L9Q9_9EUKA7.300e-3334.98Uncharacterized protein n=1 Tax=Arcella intermedia... [more]
A0A497FLW0_9CREN1.030e-2734.67Ribosome assembly factor SBDS n=1 Tax=Thermoprotei... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036786Ribosome maturation protein SBDS, N-terminal domain superfamilyGENE3D3.30.1250.10coord: 4..82
e-value: 8.5E-22
score: 78.9
IPR036786Ribosome maturation protein SBDS, N-terminal domain superfamilySUPERFAMILY89895FYSH domaincoord: 4..82
IPR002140Ribosome maturation protein Sdo1/SBDSTIGRFAMTIGR00291TIGR00291coord: 4..218
e-value: 1.4E-38
score: 130.6
IPR018978Ribosome maturation protein Sdo1/SBDS, C-terminalPFAMPF09377SBDS_Ccoord: 96..171
e-value: 1.5E-6
score: 28.2
IPR037188Ribosome maturation protein Sdo1/SBDS, central domain superfamilyGENE3D1.10.10.900coord: 84..155
e-value: 2.5E-15
score: 58.1
IPR037188Ribosome maturation protein Sdo1/SBDS, central domain superfamilySUPERFAMILY109728Hypothetical protein AF0491, middle domaincoord: 77..148
IPR019783Ribosome maturation protein Sdo1/SBDS, N-terminalPFAMPF01172SBDScoord: 5..89
e-value: 9.4E-23
score: 80.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 231..254
IPR039100Ribosome maturation protein Sdo1/SBDS-likePANTHERPTHR10927RIBOSOME MATURATION PROTEIN SBDScoord: 5..225
IPR035647EF-G domain III/V-likeSUPERFAMILY54980EF-G C-terminal domain-likecoord: 161..219

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_795_length_17855_cov_4.297850contigNODE_795_length_17855_cov_4.297850:10089..10853 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2048.t1Gcaud2048.t1Gracilaria caudata M_176_S67 malemRNANODE_795_length_17855_cov_4.297850 10089..10853 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2048.t1 ID=Gcaud2048.t1|Name=Gcaud2048.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=255bp
MPEMLVRLKKGKKTYEVMVEEGMVPKYREGSVKRIEDVVVTPVVFVNASK
GTKASSEQLNDSFQTDDVMAIIELILQKGEAQESAGERKSKMDAKRQEII
NAIQKNYVSPEGTPLPVMRIENALEQVRPRIDVDVDAARQVTAMYQKLSA
VMPMKKSSSGLEGTVTVPTHFAGQVSGIVRKHCTVLRETYRDKAKYDVEI
HAYDQLMSDLARATKGDFEFSMTTNAAAVATSSNAPAAAASSSGKKGKGK
KKRK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036786Ribosome_mat_SBDS_N_sf
IPR002140Sdo1/SBDS
IPR018978Ribosome_mat_Sdo1/SBDS_C
IPR037188Sdo1/SBDS_central_sf
IPR019783Ribosome_mat_Sdo1/SBDS_N
IPR039100Sdo1/SBDS-like
IPR035647EFG_III/V