Gcaud8305.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8305.t1
Unique NameGcaud8305.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length300
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_790_length_17954_cov_4.439568contigNODE_790_length_17954_cov_4.439568:1147..2046 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703922.1
Preferred nameCNX2
PFAMsFer4_12,MoaC,Mob_synth_C,Radical_SAM
Max annot lvl2759|Eukaryota
KEGG rclassRC03420,RC03425
KEGG koko:K03639,ko:K20967
KEGG ReactionR09394,R11372
KEGG Pathwayko00790,ko01100,ko04122,map00790,map01100,map04122
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006732,GO:0006777,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009507,GO:0009536,GO:0009987,GO:0018130,GO:0019538,GO:0019637,GO:0019720,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043545,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0051186,GO:0051188,GO:0051189,GO:0071704,GO:0090407,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
Evalue1.1e-88
EggNOG OGsCOG2896@1|root,KOG2876@2759|Eukaryota
EC4.1.99.22,4.6.1.17
Descriptioncyclic pyranopterin monophosphate synthase activity
COG categoryH
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8305Gcaud8305Gracilaria caudata M_176_S67 malegeneNODE_790_length_17954_cov_4.439568 1147..2046 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8305.t1.stop1Gcaud8305.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_790_length_17954_cov_4.439568 1147..1149 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8305.t1.CDS1Gcaud8305.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_790_length_17954_cov_4.439568 1147..2046 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8305.t1.exon1Gcaud8305.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_790_length_17954_cov_4.439568 1147..2046 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8305.t1.start1Gcaud8305.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_790_length_17954_cov_4.439568 2044..2046 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8305.t1Gcaud8305.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_790_length_17954_cov_4.439568 1147..2046 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8305.t1 ID=Gcaud8305.t1|Name=Gcaud8305.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=300bp
MPEHATFSPSPQLLNTDEVLRVLRVFRSAGITKLRLTGGEPLLRPDLPRI
IAAASPHVPVSITTNGVLLSRRLPQLLQAGLSAVNLSLDSLCPHTFSLLT
RRPPAAHARVLRALHDVLQEPTLAVKLNVVVMSSVNDHSLPQFAALTERH
AMDVRFIEYMPFDGNEWRHASFVPYSHMLQTLARHYGRLQHEPTHPSDTS
KYYRIPGFAGRIGFISSMSDHFCAGCNRLRVTADGALKTCLFGEHELSLR
DLMREGASDDQLLQAVRDALQLKHFALGGKSDMFALAAADNRSMVRIGG*
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spliced messenger RNA

>Gcaud8305.t1 ID=Gcaud8305.t1|Name=Gcaud8305.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=900bp|location=Sequence derived from alignment at NODE_790_length_17954_cov_4.439568:1147..2046- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCGAGCACGCCACCTTCTCCCCGTCCCCGCAGCTGCTCAACACCGA
CGAAGTGCTGCGCGTGCTGCGCGTGTTCCGCTCCGCGGGCATCACCAAGC
TGCGTCTCACTGGCGGCGAGCCGTTGCTGCGCCCCGATCTCCCGCGCATC
ATTGCCGCCGCGTCGCCGCACGTGCCCGTGTCCATCACCACCAACGGCGT
GCTTCTGTCGCGTCGTCTGCCGCAGCTGCTGCAAGCGGGCCTGTCCGCTG
TCAATCTCAGCCTCGACTCGCTGTGTCCGCACACCTTTTCGCTGCTCACT
CGTCGTCCGCCCGCCGCGCACGCGCGCGTGCTTCGCGCGTTGCACGATGT
GTTACAAGAGCCGACGCTCGCTGTCAAGCTCAACGTGGTGGTCATGTCGT
CTGTCAACGACCACTCGCTGCCGCAGTTCGCTGCGCTTACGGAGCGTCAC
GCGATGGACGTGCGTTTTATCGAGTACATGCCGTTCGACGGCAACGAGTG
GCGTCACGCTTCCTTCGTGCCCTACTCGCACATGCTGCAGACGCTGGCGC
GTCACTACGGCCGTCTACAACACGAGCCCACTCATCCCAGCGACACCTCC
AAGTACTACCGCATTCCTGGGTTTGCAGGCCGCATCGGTTTCATCTCCAG
CATGAGCGACCATTTTTGCGCCGGCTGCAACCGCCTGCGCGTCACCGCAG
ACGGCGCGCTCAAGACCTGTCTGTTTGGCGAGCACGAGCTTTCGTTGCGC
GACCTCATGCGAGAAGGAGCCTCCGATGACCAACTCTTGCAAGCCGTGCG
GGACGCTTTGCAGCTCAAGCATTTCGCCTTGGGAGGCAAAAGCGACATGT
TTGCGCTTGCTGCCGCCGACAACCGCAGTATGGTCAGAATAGGCGGCTGA
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protein sequence of Gcaud8305.t1

>Gcaud8305.t1 ID=Gcaud8305.t1|Name=Gcaud8305.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=300bp
MPEHATFSPSPQLLNTDEVLRVLRVFRSAGITKLRLTGGEPLLRPDLPRI
IAAASPHVPVSITTNGVLLSRRLPQLLQAGLSAVNLSLDSLCPHTFSLLT
RRPPAAHARVLRALHDVLQEPTLAVKLNVVVMSSVNDHSLPQFAALTERH
AMDVRFIEYMPFDGNEWRHASFVPYSHMLQTLARHYGRLQHEPTHPSDTS
KYYRIPGFAGRIGFISSMSDHFCAGCNRLRVTADGALKTCLFGEHELSLR
DLMREGASDDQLLQAVRDALQLKHFALGGKSDMFALAAADNRSMVRIGG*
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mRNA from alignment at NODE_790_length_17954_cov_4.439568:1147..2046-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8305.t1 ID=Gcaud8305.t1|Name=Gcaud8305.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=900bp|location=Sequence derived from alignment at NODE_790_length_17954_cov_4.439568:1147..2046- (Gracilaria caudata M_176_S67 male)
ATGCCCGAGCACGCCACCTTCTCCCCGTCCCCGCAGCTGCTCAACACCGA
CGAAGTGCTGCGCGTGCTGCGCGTGTTCCGCTCCGCGGGCATCACCAAGC
TGCGTCTCACTGGCGGCGAGCCGTTGCTGCGCCCCGATCTCCCGCGCATC
ATTGCCGCCGCGTCGCCGCACGTGCCCGTGTCCATCACCACCAACGGCGT
GCTTCTGTCGCGTCGTCTGCCGCAGCTGCTGCAAGCGGGCCTGTCCGCTG
TCAATCTCAGCCTCGACTCGCTGTGTCCGCACACCTTTTCGCTGCTCACT
CGTCGTCCGCCCGCCGCGCACGCGCGCGTGCTTCGCGCGTTGCACGATGT
GTTACAAGAGCCGACGCTCGCTGTCAAGCTCAACGTGGTGGTCATGTCGT
CTGTCAACGACCACTCGCTGCCGCAGTTCGCTGCGCTTACGGAGCGTCAC
GCGATGGACGTGCGTTTTATCGAGTACATGCCGTTCGACGGCAACGAGTG
GCGTCACGCTTCCTTCGTGCCCTACTCGCACATGCTGCAGACGCTGGCGC
GTCACTACGGCCGTCTACAACACGAGCCCACTCATCCCAGCGACACCTCC
AAGTACTACCGCATTCCTGGGTTTGCAGGCCGCATCGGTTTCATCTCCAG
CATGAGCGACCATTTTTGCGCCGGCTGCAACCGCCTGCGCGTCACCGCAG
ACGGCGCGCTCAAGACCTGTCTGTTTGGCGAGCACGAGCTTTCGTTGCGC
GACCTCATGCGAGAAGGAGCCTCCGATGACCAACTCTTGCAAGCCGTGCG
GGACGCTTTGCAGCTCAAGCATTTCGCCTTGGGAGGCAAAAGCGACATGT
TTGCGCTTGCTGCCGCCGACAACCGCAGTATGGTCAGAATAGGCGGCTGA
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Coding sequence (CDS) from alignment at NODE_790_length_17954_cov_4.439568:1147..2046-

>Gcaud8305.t1 ID=Gcaud8305.t1|Name=Gcaud8305.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=900bp|location=Sequence derived from alignment at NODE_790_length_17954_cov_4.439568:1147..2046- (Gracilaria caudata M_176_S67 male)
ATGCCCGAGCACGCCACCTTCTCCCCGTCCCCGCAGCTGCTCAACACCGA
CGAAGTGCTGCGCGTGCTGCGCGTGTTCCGCTCCGCGGGCATCACCAAGC
TGCGTCTCACTGGCGGCGAGCCGTTGCTGCGCCCCGATCTCCCGCGCATC
ATTGCCGCCGCGTCGCCGCACGTGCCCGTGTCCATCACCACCAACGGCGT
GCTTCTGTCGCGTCGTCTGCCGCAGCTGCTGCAAGCGGGCCTGTCCGCTG
TCAATCTCAGCCTCGACTCGCTGTGTCCGCACACCTTTTCGCTGCTCACT
CGTCGTCCGCCCGCCGCGCACGCGCGCGTGCTTCGCGCGTTGCACGATGT
GTTACAAGAGCCGACGCTCGCTGTCAAGCTCAACGTGGTGGTCATGTCGT
CTGTCAACGACCACTCGCTGCCGCAGTTCGCTGCGCTTACGGAGCGTCAC
GCGATGGACGTGCGTTTTATCGAGTACATGCCGTTCGACGGCAACGAGTG
GCGTCACGCTTCCTTCGTGCCCTACTCGCACATGCTGCAGACGCTGGCGC
GTCACTACGGCCGTCTACAACACGAGCCCACTCATCCCAGCGACACCTCC
AAGTACTACCGCATTCCTGGGTTTGCAGGCCGCATCGGTTTCATCTCCAG
CATGAGCGACCATTTTTGCGCCGGCTGCAACCGCCTGCGCGTCACCGCAG
ACGGCGCGCTCAAGACCTGTCTGTTTGGCGAGCACGAGCTTTCGTTGCGC
GACCTCATGCGAGAAGGAGCCTCCGATGACCAACTCTTGCAAGCCGTGCG
GGACGCTTTGCAGCTCAAGCATTTCGCCTTGGGAGGCAAAAGCGACATGT
TTGCGCTTGCTGCCGCCGACAACCGCAGTATGGTCAGAATAGGCGGCTGA
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