Gcaud2117.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2117.t1
Unique NameGcaud2117.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length318
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_789_length_17968_cov_4.013593contigNODE_789_length_17968_cov_4.013593:458..1830 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog248742.XP_005651123.1
PFAMsPA,zf-RING_2
Max annot lvl33090|Viridiplantae
KEGG koko:K15692
GOsGO:0000139,GO:0000209,GO:0000322,GO:0000325,GO:0000326,GO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005794,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0012505,GO:0016020,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0031090,GO:0031984,GO:0032446,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045786,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051726,GO:0065007,GO:0070647,GO:0071704,GO:0098588,GO:0098791,GO:0140096,GO:1901564
Evalue2.95e-08
EggNOG OGsKOG4628@1|root,KOG4628@2759|Eukaryota,37QFZ@33090|Viridiplantae
EC2.3.2.27
DescriptionReceptor homology region, transmembrane domain- and RING domain-containing protein
COG categoryO
BRITEko00000,ko01000,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2117Gcaud2117Gracilaria caudata M_176_S67 malegeneNODE_789_length_17968_cov_4.013593 458..1830 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2117.t1Gcaud2117.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_789_length_17968_cov_4.013593 458..1830 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2117.t1.CDS1Gcaud2117.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_789_length_17968_cov_4.013593 458..535 +
Gcaud2117.t1.CDS2Gcaud2117.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_789_length_17968_cov_4.013593 658..1292 +
Gcaud2117.t1.CDS3Gcaud2117.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_789_length_17968_cov_4.013593 1391..1537 +
Gcaud2117.t1.CDS4Gcaud2117.t1.CDS4Gracilaria caudata M_176_S67 maleCDSNODE_789_length_17968_cov_4.013593 1737..1830 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2117.t1.exon1Gcaud2117.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_789_length_17968_cov_4.013593 458..535 +
Gcaud2117.t1.exon2Gcaud2117.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_789_length_17968_cov_4.013593 658..1292 +
Gcaud2117.t1.exon3Gcaud2117.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_789_length_17968_cov_4.013593 1391..1537 +
Gcaud2117.t1.exon4Gcaud2117.t1.exon4Gracilaria caudata M_176_S67 maleexonNODE_789_length_17968_cov_4.013593 1737..1830 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2117.t1.intron1Gcaud2117.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_789_length_17968_cov_4.013593 536..657 +
Gcaud2117.t1.intron2Gcaud2117.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_789_length_17968_cov_4.013593 1293..1390 +
Gcaud2117.t1.intron3Gcaud2117.t1.intron3Gracilaria caudata M_176_S67 maleintronNODE_789_length_17968_cov_4.013593 1538..1736 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2117.t1.stop1Gcaud2117.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_789_length_17968_cov_4.013593 1828..1830 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2117.t1 ID=Gcaud2117.t1|Name=Gcaud2117.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=318bp
YVALITLVFIFACALYFAISNWRGIDREMNDSQWRERECTLVGDIQVLQR
ADTEQFRVRVNVTLSSAQQTPQAAYYGRMQTTYSQSEAQQIRTDLTARRE
QNNDTLPCWVRDALSTPSAISLLPISASSSVYLAWTGTFMAAVVGVILIT
VCSSSLGAPMGVAPRARGGVTTTPPAVAKSTHLTERQAMSVCARFEQQVD
ARSVKEWTCSICLEDEHEHAQHTVNTVVLPCGHRFHNACIKQWLWKGKGL
CPLCKWDAREFIAEQKRAAAHAADEALSSEWDAATTTSTTTPPSTPSTPS
TPNTRTTRGGSVRVSTD*
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spliced messenger RNA

>Gcaud2117.t1 ID=Gcaud2117.t1|Name=Gcaud2117.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=954bp|location=Sequence derived from alignment at NODE_789_length_17968_cov_4.013593:458..1830+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
TATGTGGCGCTCATCACGCTGGTATTTATCTTTGCGTGCGCGCTGTACTT
TGCCATCTCCAACTGGCGAGGCATCGACAGAGAGATGAATGACTCGCAAT
GGAGAGAGCGCGAGTGCACGCTGGTGGGCGACATTCAAGTGCTACAACGC
GCCGATACCGAGCAGTTCCGCGTGCGCGTCAACGTCACATTATCCTCCGC
GCAACAAACGCCGCAAGCCGCGTACTACGGGCGCATGCAAACCACCTACT
CGCAGTCCGAGGCGCAGCAAATCCGCACCGATCTCACCGCGCGCCGCGAG
CAGAACAACGACACGCTACCGTGCTGGGTGCGCGACGCGCTGAGCACGCC
GTCGGCCATTTCGCTGCTGCCCATCAGCGCGTCGTCCAGCGTGTATCTGG
CGTGGACGGGCACGTTCATGGCCGCCGTGGTGGGCGTGATTCTCATCACG
GTGTGCTCCAGCTCGCTGGGCGCGCCTATGGGCGTGGCGCCGCGGGCGCG
CGGTGGCGTGACCACCACGCCGCCGGCGGTGGCGAAAAGCACGCACCTCA
CGGAACGACAGGCGATGAGCGTTTGCGCCAGGTTTGAACAGCAGGTGGAC
GCGCGTAGCGTGAAGGAGTGGACGTGCTCCATCTGTCTGGAGGATGAACA
TGAGCACGCGCAGCACACCGTCAACACGGTGGTGCTGCCGTGCGGACACC
GCTTCCACAACGCATGCATCAAGCAATGGCTGTGGAAGGGAAAGGGACTG
TGCCCGCTGTGCAAGTGGGACGCGCGCGAATTCATCGCCGAGCAGAAACG
CGCCGCCGCGCACGCAGCGGACGAGGCGCTGAGCAGCGAGTGGGACGCCG
CCACCACCACcaGCACCACCACGCcgccgagcacgccgagcacgccgagc
acgccgaacacgcGCACGACGCGCGGCGGCAGCGTGCGCGTCAGCACTGA
CTGA
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protein sequence of Gcaud2117.t1

>Gcaud2117.t1 ID=Gcaud2117.t1|Name=Gcaud2117.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=318bp
YVALITLVFIFACALYFAISNWRGIDREMNDSQWRERECTLVGDIQVLQR
ADTEQFRVRVNVTLSSAQQTPQAAYYGRMQTTYSQSEAQQIRTDLTARRE
QNNDTLPCWVRDALSTPSAISLLPISASSSVYLAWTGTFMAAVVGVILIT
VCSSSLGAPMGVAPRARGGVTTTPPAVAKSTHLTERQAMSVCARFEQQVD
ARSVKEWTCSICLEDEHEHAQHTVNTVVLPCGHRFHNACIKQWLWKGKGL
CPLCKWDAREFIAEQKRAAAHAADEALSSEWDAATTTSTTTPPSTPSTPS
TPNTRTTRGGSVRVSTD*
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mRNA from alignment at NODE_789_length_17968_cov_4.013593:458..1830+

Legend: polypeptideCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2117.t1 ID=Gcaud2117.t1|Name=Gcaud2117.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1373bp|location=Sequence derived from alignment at NODE_789_length_17968_cov_4.013593:458..1830+ (Gracilaria caudata M_176_S67 male)
TATGTGGCGCTCATCACGCTGGTATTTATCTTTGCGTGCGCGCTGTACTT
TGCCATCTCCAACTGGCGAGGCATCGACGTAAGTTTTTTTTTTTCTTTTG
TTTGTGTGTGTTATGTGTGTGAGAGAGAGAGAAAGAATTCAAACTCACCG
ATGATGCGGCGCGTGTTCATTTTGTGTGCCACAAAAAAAAAAAATGCCAG
AGAGAGATGAATGACTCGCAATGGAGAGAGCGCGAGTGCACGCTGGTGGG
CGACATTCAAGTGCTACAACGCGCCGATACCGAGCAGTTCCGCGTGCGCG
TCAACGTCACATTATCCTCCGCGCAACAAACGCCGCAAGCCGCGTACTAC
GGGCGCATGCAAACCACCTACTCGCAGTCCGAGGCGCAGCAAATCCGCAC
CGATCTCACCGCGCGCCGCGAGCAGAACAACGACACGCTACCGTGCTGGG
TGCGCGACGCGCTGAGCACGCCGTCGGCCATTTCGCTGCTGCCCATCAGC
GCGTCGTCCAGCGTGTATCTGGCGTGGACGGGCACGTTCATGGCCGCCGT
GGTGGGCGTGATTCTCATCACGGTGTGCTCCAGCTCGCTGGGCGCGCCTA
TGGGCGTGGCGCCGCGGGCGCGCGGTGGCGTGACCACCACGCCGCCGGCG
GTGGCGAAAAGCACGCACCTCACGGAACGACAGGCGATGAGCGTTTGCGC
CAGGTTTGAACAGCAGGTGGACGCGCGTAGCGTGAAGGAGTGGACGTGCT
CCATCTGTCTGGAGGATGAACATGAGCACGCGCAGCACACCGTCAACACG
GTGGTGCTGCCGTGCGGACACCGCTTCCACAACGCGTACGTTTCtttttt
tttgttgttgttggtgttgttgttgttgtgtgagattttgctgacgtttt
tatttgcgcttttttttgtttgtgtGCGCGCAGATGCATCAAGCAATGGC
TGTGGAAGGGAAAGGGACTGTGCCCGCTGTGCAAGTGGGACGCGCGCGAA
TTCATCGCCGAGCAGAAACGCGCCGCCGCGCACGCAGCGGACGAGGCGCT
GAGCAGCGAGTGGGACGCCGCCACCACCACGTCTGTGTTTTCGTCGTccg
cgcccgacgccgcgtccgcgccgcactcgctcagcagtctgcccttctcc
gcgcccgcgcacccgcccgcgcacccgcccgcgccggcgcagcgcgacgc
tgcTGCGCATGTGGCGCTCGACATGCACGTgtcgtcgtcgccgtcgtcgt
cgtcgccgcgccactctcagcaccaccagcaGCACCACCACGCcgccgag
cacgccgagcacgccgagcacgccgaacacgcGCACGACGCGCGGCGGCA
GCGTGCGCGTCAGCACTGACTGA
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Coding sequence (CDS) from alignment at NODE_789_length_17968_cov_4.013593:458..1830+

>Gcaud2117.t1 ID=Gcaud2117.t1|Name=Gcaud2117.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=954bp|location=Sequence derived from alignment at NODE_789_length_17968_cov_4.013593:458..1830+ (Gracilaria caudata M_176_S67 male)
TATGTGGCGCTCATCACGCTGGTATTTATCTTTGCGTGCGCGCTGTACTT
TGCCATCTCCAACTGGCGAGGCATCGACAGAGAGATGAATGACTCGCAAT
GGAGAGAGCGCGAGTGCACGCTGGTGGGCGACATTCAAGTGCTACAACGC
GCCGATACCGAGCAGTTCCGCGTGCGCGTCAACGTCACATTATCCTCCGC
GCAACAAACGCCGCAAGCCGCGTACTACGGGCGCATGCAAACCACCTACT
CGCAGTCCGAGGCGCAGCAAATCCGCACCGATCTCACCGCGCGCCGCGAG
CAGAACAACGACACGCTACCGTGCTGGGTGCGCGACGCGCTGAGCACGCC
GTCGGCCATTTCGCTGCTGCCCATCAGCGCGTCGTCCAGCGTGTATCTGG
CGTGGACGGGCACGTTCATGGCCGCCGTGGTGGGCGTGATTCTCATCACG
GTGTGCTCCAGCTCGCTGGGCGCGCCTATGGGCGTGGCGCCGCGGGCGCG
CGGTGGCGTGACCACCACGCCGCCGGCGGTGGCGAAAAGCACGCACCTCA
CGGAACGACAGGCGATGAGCGTTTGCGCCAGGTTTGAACAGCAGGTGGAC
GCGCGTAGCGTGAAGGAGTGGACGTGCTCCATCTGTCTGGAGGATGAACA
TGAGCACGCGCAGCACACCGTCAACACGGTGGTGCTGCCGTGCGGACACC
GCTTCCACAACGCATGCATCAAGCAATGGCTGTGGAAGGGAAAGGGACTG
TGCCCGCTGTGCAAGTGGGACGCGCGCGAATTCATCGCCGAGCAGAAACG
CGCCGCCGCGCACGCAGCGGACGAGGCGCTGAGCAGCGAGTGGGACGCCG
CCACCACCACcaGCACCACCACGCcgccgagcacgccgagcacgccgagc
acgccgaacacgcGCACGACGCGCGGCGGCAGCGTGCGCGTCAGCACTGA
CTGA
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