Gcaud2118.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2118.t1
Unique Name	Gcaud2118.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	626

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_789_length_17968_cov_4.013593	contig	NODE_789_length_17968_cov_4.013593:2242..4119 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005708989.1
PFAMs	CTP_synth_N,GATase
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00010,RC00074
KEGG ko	ko:K01937
KEGG Reaction	R00571,R00573
KEGG Pathway	ko00240,ko01100,map00240,map01100
KEGG Module	M00052
GOs	GO:0001775,GO:0002376,GO:0003674,GO:0003824,GO:0003883,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006213,GO:0006220,GO:0006221,GO:0006241,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008283,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009163,GO:0009165,GO:0009199,GO:0009201,GO:0009208,GO:0009209,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0015949,GO:0016874,GO:0016879,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0032943,GO:0034404,GO:0034641,GO:0034654,GO:0042098,GO:0042100,GO:0042110,GO:0042113,GO:0042221,GO:0042455,GO:0042493,GO:0042802,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045321,GO:0046036,GO:0046131,GO:0046132,GO:0046134,GO:0046390,GO:0046483,GO:0046649,GO:0046651,GO:0050896,GO:0055086,GO:0070661,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659
Evalue	2.23e-270
EggNOG OGs	COG0504@1\|root,KOG2387@2759\|Eukaryota
EC	6.3.4.2
Description	'de novo' CTP biosynthetic process
COG category	F
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2118	Gcaud2118	Gracilaria caudata M_176_S67 male	gene	NODE_789_length_17968_cov_4.013593 2242..4119 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2118.t1.start1	Gcaud2118.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_789_length_17968_cov_4.013593 2242..2244 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2118.t1.CDS1	Gcaud2118.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_789_length_17968_cov_4.013593 2242..4119 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2118.t1.exon1	Gcaud2118.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_789_length_17968_cov_4.013593 2242..4119 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2118.t1.stop1	Gcaud2118.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_789_length_17968_cov_4.013593 4117..4119 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2118.t1	Gcaud2118.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_789_length_17968_cov_4.013593 2242..4119 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_789_length_17968_cov_4.013593:2242..4119+
coding sequence from alignment at NODE_789_length_17968_cov_4.013593:2242..4119+

mRNA sequence

>Gcaud2118.t1 ID=Gcaud2118.t1|Name=Gcaud2118.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=626bp
MRHAFPNGGAAAAPRVKFVLVSGGVISGIGKGLTASSLGVLLKCCGWRVT
AIKIDPYLNLDAGTMSPFEHGEVFVLHDGGEVDLDLGNYERFLDVTLARH
NNITTGKIYARVLERERSGEYLGKTVQVVPHVTDAIQDWIMNVATTPDAD
GLVPEICVIELGGTIGDIESMPFVEALRQLRYNVGDVNFCSVFVSLVPIL
GVVGEQKTKPTQHGVKQITSMGLSPQLIVCRSEVPLLPETKKKLALFCQV
APDAVASVHDVSNTYRIPMMLQEQGVCNLLIRTLQLVWRLPVRLEKWARM
ASKADERCERVNICIVGKYTGLSDAYLSVVRALQHAGMAIGRNVHVTWVE
STDLESAPCGSPLEANGASGECNGNRSPAHSRSSSSGARSCREGGGESAW
EVVKRAHGILVPGGFGDRGVEGKMAAIRYARDQNVPFLGICLGMQLAVVE
AARHVFEGLEVNSEEIDKHAEVKAVVYMPEVDKSKMGGTMRLGVRKTIIR
QPQCVAAWLYGATEIYERHRHRYEVNPDIVQQLEQRDSLRFVGVDESAQR
MEIVEDEAHRFFVGTQFHPEFTSRPGRPSPPFVGLVMAAARLPCEREQIE
LRMRNIRRQDPWGDDDDDEAPEQPL*

spliced messenger RNA

>Gcaud2118.t1 ID=Gcaud2118.t1|Name=Gcaud2118.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1878bp|location=Sequence derived from alignment at NODE_789_length_17968_cov_4.013593:2242..4119+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
atgcgccacgcgtttcccaacggcggcgccgccgccgcgccgcgcGTCAA
GTTTGTGCTGGTGTCGGGCGGCGTCATCTCCGGCATAGGAAAGGGGCTCA
CCGCCTCCTCGCTGGGCGTGCTGCTCAAGTGCTGCGGCTGGCGCGTCACC
GCCATCAAAATCGACCCGTACCTCAACCTGGACGCCGGCACCATGTCGCC
CTTCGAGCACGGCGAGGTGTTTGTGCTGCACGACGGCGGCGAGGTCGACC
TCGATCTGGGCAACTACGAACGCTTTCTGGACGTCACGCTGGCGCGTCAC
AACAACATCACCACCGGCAAGATCTACGCGCGCGTGCTGGAGAGGGAGAG
AAGTGGAGAGTATTTGGGAAAGACGGTGCAGGTGGTGCCGCATGTGACCG
ACGCCATTCAGGATTGGATTATGAACGTGGCCACCACGCCGGACGCGGAT
GGTCTGGTGCCGGAGATTTGTGTGATTGAACTGGGCGGCACCATTGGCGA
TATTGAGTCGATGCCGTTTGTGGAGGCGTTGCGACAGCTGCGCTACAACG
TGGGCGATGTGAATTTCTGCTCGGTGTTTGTGTCGCTGGTGCCCATTCTG
GGCGTGGTGGGCGAGCAAAAGACAAAGCCCACGCAACATGGCGTCAAACA
AATCACGTCCATGGGGCTGTCGCCGCAGCTCATTGTGTGTCGTTCCGAGG
TGCCGTTGCTGCCGGAGACCAAGAAGAAGCTGGCGCTGTTCTGTCAGGTG
GCGCCCGACGCGGTGGCGTCTGTGCACGACGTGTCCAACACGTACCGCAT
CCCCATGATGCTGCAGGAACAGGGCGTGTGCAACCTGCTCATCCGCACGC
TGCAGCTGGTGTGGCGCCTGCCGGTGCGACTGGAGAAGTGGGCGCGCATG
GCAAGCAAGGCGGACGAACGCTGTGAGCGCGTGAACATCTGCATTGTGGG
CAAGTACACCGGGCTGTCGGACGCGTACCTGTCGGTGGTTCGCGCGCTGC
AACACGCCGGCATGGCCATTGGCAGAAACGTGCACGTCACGTGGGTGGAA
TCCACCGACCTGGAAAGCGCGCCGTGCGGCTCGCCGCTGGAGGCGAACGG
CGCGTCTGGCGAGTGCAATGGCAACAGGTCGCCGGCGCACTCGCGCTCGA
GTAGCTCGGGCGCGCGGTCGTGCAGGGAGGGCGGCGGCGAGTCGGCGTGG
GAGGTGGTCAAGCGCGCGCACGGTATCTTGGTGCCCGGCGGGTTTGGCGA
CCGCGGCGTGGAGGGCAAGATGGCGGCCATCCGCTACGCGAGGGATCAGA
ACGTACCGTTTTTGGGCATTTGTTTGGGCATGCAGCTGGCGGTGGTGGAG
GCGGCGAGGCATGTGTTTGAGGGACTCGAGGTGAACTCGGAGGAGATTGA
CAAGCACGCGGAGGTGAAGGCGGTGGTGTACATGCCGGAGGTGGACAAGA
GCAAGATGGGCGGCACCATGCGACTGGGCGTGCGCAAGACCATCATCCGC
CAGCCGCAGTGCGTGGCGGCGTGGCTGTACGGCGCCACGGAGATTTACGA
GCGCCACCGACACCGCTACGAGGTGAACCCGGACATTGTGCAGCAGTTGG
AGCAGCGCGACAGCCTGCGCTTTGTGGGCGTGGACGAGAGCGCGCAGCGC
ATGGAGATTGTGGAGGACGAGGCGCACCGCTTCTTCGTGGGCACGCAGTT
CCACCCGGAGTTCACCAGCCGACCGGGGCGCCCGTCGCCGCCGTTCGTGG
GGCTGGTGATGGCGGCGGCGCGCCTGCCGTGCGAGCGCGAGCAGATCGAG
CTGCGCATGCGCAACATCCGGCGGCAGGACCCGTGGGGCGACGACGATGA
TGATGAGGCGCCCGAGCAGCCGCTGTGA

protein sequence of Gcaud2118.t1

>Gcaud2118.t1 ID=Gcaud2118.t1|Name=Gcaud2118.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=626bp
MRHAFPNGGAAAAPRVKFVLVSGGVISGIGKGLTASSLGVLLKCCGWRVT
AIKIDPYLNLDAGTMSPFEHGEVFVLHDGGEVDLDLGNYERFLDVTLARH
NNITTGKIYARVLERERSGEYLGKTVQVVPHVTDAIQDWIMNVATTPDAD
GLVPEICVIELGGTIGDIESMPFVEALRQLRYNVGDVNFCSVFVSLVPIL
GVVGEQKTKPTQHGVKQITSMGLSPQLIVCRSEVPLLPETKKKLALFCQV
APDAVASVHDVSNTYRIPMMLQEQGVCNLLIRTLQLVWRLPVRLEKWARM
ASKADERCERVNICIVGKYTGLSDAYLSVVRALQHAGMAIGRNVHVTWVE
STDLESAPCGSPLEANGASGECNGNRSPAHSRSSSSGARSCREGGGESAW
EVVKRAHGILVPGGFGDRGVEGKMAAIRYARDQNVPFLGICLGMQLAVVE
AARHVFEGLEVNSEEIDKHAEVKAVVYMPEVDKSKMGGTMRLGVRKTIIR
QPQCVAAWLYGATEIYERHRHRYEVNPDIVQQLEQRDSLRFVGVDESAQR
MEIVEDEAHRFFVGTQFHPEFTSRPGRPSPPFVGLVMAAARLPCEREQIE
LRMRNIRRQDPWGDDDDDEAPEQPL*

mRNA from alignment at NODE_789_length_17968_cov_4.013593:2242..4119+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2118.t1 ID=Gcaud2118.t1|Name=Gcaud2118.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1878bp|location=Sequence derived from alignment at NODE_789_length_17968_cov_4.013593:2242..4119+ (Gracilaria caudata M_176_S67 male)
atgcgccacgcgtttcccaacggcggcgccgccgccgcgccgcgcGTCAA
GTTTGTGCTGGTGTCGGGCGGCGTCATCTCCGGCATAGGAAAGGGGCTCA
CCGCCTCCTCGCTGGGCGTGCTGCTCAAGTGCTGCGGCTGGCGCGTCACC
GCCATCAAAATCGACCCGTACCTCAACCTGGACGCCGGCACCATGTCGCC
CTTCGAGCACGGCGAGGTGTTTGTGCTGCACGACGGCGGCGAGGTCGACC
TCGATCTGGGCAACTACGAACGCTTTCTGGACGTCACGCTGGCGCGTCAC
AACAACATCACCACCGGCAAGATCTACGCGCGCGTGCTGGAGAGGGAGAG
AAGTGGAGAGTATTTGGGAAAGACGGTGCAGGTGGTGCCGCATGTGACCG
ACGCCATTCAGGATTGGATTATGAACGTGGCCACCACGCCGGACGCGGAT
GGTCTGGTGCCGGAGATTTGTGTGATTGAACTGGGCGGCACCATTGGCGA
TATTGAGTCGATGCCGTTTGTGGAGGCGTTGCGACAGCTGCGCTACAACG
TGGGCGATGTGAATTTCTGCTCGGTGTTTGTGTCGCTGGTGCCCATTCTG
GGCGTGGTGGGCGAGCAAAAGACAAAGCCCACGCAACATGGCGTCAAACA
AATCACGTCCATGGGGCTGTCGCCGCAGCTCATTGTGTGTCGTTCCGAGG
TGCCGTTGCTGCCGGAGACCAAGAAGAAGCTGGCGCTGTTCTGTCAGGTG
GCGCCCGACGCGGTGGCGTCTGTGCACGACGTGTCCAACACGTACCGCAT
CCCCATGATGCTGCAGGAACAGGGCGTGTGCAACCTGCTCATCCGCACGC
TGCAGCTGGTGTGGCGCCTGCCGGTGCGACTGGAGAAGTGGGCGCGCATG
GCAAGCAAGGCGGACGAACGCTGTGAGCGCGTGAACATCTGCATTGTGGG
CAAGTACACCGGGCTGTCGGACGCGTACCTGTCGGTGGTTCGCGCGCTGC
AACACGCCGGCATGGCCATTGGCAGAAACGTGCACGTCACGTGGGTGGAA
TCCACCGACCTGGAAAGCGCGCCGTGCGGCTCGCCGCTGGAGGCGAACGG
CGCGTCTGGCGAGTGCAATGGCAACAGGTCGCCGGCGCACTCGCGCTCGA
GTAGCTCGGGCGCGCGGTCGTGCAGGGAGGGCGGCGGCGAGTCGGCGTGG
GAGGTGGTCAAGCGCGCGCACGGTATCTTGGTGCCCGGCGGGTTTGGCGA
CCGCGGCGTGGAGGGCAAGATGGCGGCCATCCGCTACGCGAGGGATCAGA
ACGTACCGTTTTTGGGCATTTGTTTGGGCATGCAGCTGGCGGTGGTGGAG
GCGGCGAGGCATGTGTTTGAGGGACTCGAGGTGAACTCGGAGGAGATTGA
CAAGCACGCGGAGGTGAAGGCGGTGGTGTACATGCCGGAGGTGGACAAGA
GCAAGATGGGCGGCACCATGCGACTGGGCGTGCGCAAGACCATCATCCGC
CAGCCGCAGTGCGTGGCGGCGTGGCTGTACGGCGCCACGGAGATTTACGA
GCGCCACCGACACCGCTACGAGGTGAACCCGGACATTGTGCAGCAGTTGG
AGCAGCGCGACAGCCTGCGCTTTGTGGGCGTGGACGAGAGCGCGCAGCGC
ATGGAGATTGTGGAGGACGAGGCGCACCGCTTCTTCGTGGGCACGCAGTT
CCACCCGGAGTTCACCAGCCGACCGGGGCGCCCGTCGCCGCCGTTCGTGG
GGCTGGTGATGGCGGCGGCGCGCCTGCCGTGCGAGCGCGAGCAGATCGAG
CTGCGCATGCGCAACATCCGGCGGCAGGACCCGTGGGGCGACGACGATGA
TGATGAGGCGCCCGAGCAGCCGCTGTGA

Coding sequence (CDS) from alignment at NODE_789_length_17968_cov_4.013593:2242..4119+

>Gcaud2118.t1 ID=Gcaud2118.t1|Name=Gcaud2118.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1878bp|location=Sequence derived from alignment at NODE_789_length_17968_cov_4.013593:2242..4119+ (Gracilaria caudata M_176_S67 male)
atgcgccacgcgtttcccaacggcggcgccgccgccgcgccgcgcGTCAA
GTTTGTGCTGGTGTCGGGCGGCGTCATCTCCGGCATAGGAAAGGGGCTCA
CCGCCTCCTCGCTGGGCGTGCTGCTCAAGTGCTGCGGCTGGCGCGTCACC
GCCATCAAAATCGACCCGTACCTCAACCTGGACGCCGGCACCATGTCGCC
CTTCGAGCACGGCGAGGTGTTTGTGCTGCACGACGGCGGCGAGGTCGACC
TCGATCTGGGCAACTACGAACGCTTTCTGGACGTCACGCTGGCGCGTCAC
AACAACATCACCACCGGCAAGATCTACGCGCGCGTGCTGGAGAGGGAGAG
AAGTGGAGAGTATTTGGGAAAGACGGTGCAGGTGGTGCCGCATGTGACCG
ACGCCATTCAGGATTGGATTATGAACGTGGCCACCACGCCGGACGCGGAT
GGTCTGGTGCCGGAGATTTGTGTGATTGAACTGGGCGGCACCATTGGCGA
TATTGAGTCGATGCCGTTTGTGGAGGCGTTGCGACAGCTGCGCTACAACG
TGGGCGATGTGAATTTCTGCTCGGTGTTTGTGTCGCTGGTGCCCATTCTG
GGCGTGGTGGGCGAGCAAAAGACAAAGCCCACGCAACATGGCGTCAAACA
AATCACGTCCATGGGGCTGTCGCCGCAGCTCATTGTGTGTCGTTCCGAGG
TGCCGTTGCTGCCGGAGACCAAGAAGAAGCTGGCGCTGTTCTGTCAGGTG
GCGCCCGACGCGGTGGCGTCTGTGCACGACGTGTCCAACACGTACCGCAT
CCCCATGATGCTGCAGGAACAGGGCGTGTGCAACCTGCTCATCCGCACGC
TGCAGCTGGTGTGGCGCCTGCCGGTGCGACTGGAGAAGTGGGCGCGCATG
GCAAGCAAGGCGGACGAACGCTGTGAGCGCGTGAACATCTGCATTGTGGG
CAAGTACACCGGGCTGTCGGACGCGTACCTGTCGGTGGTTCGCGCGCTGC
AACACGCCGGCATGGCCATTGGCAGAAACGTGCACGTCACGTGGGTGGAA
TCCACCGACCTGGAAAGCGCGCCGTGCGGCTCGCCGCTGGAGGCGAACGG
CGCGTCTGGCGAGTGCAATGGCAACAGGTCGCCGGCGCACTCGCGCTCGA
GTAGCTCGGGCGCGCGGTCGTGCAGGGAGGGCGGCGGCGAGTCGGCGTGG
GAGGTGGTCAAGCGCGCGCACGGTATCTTGGTGCCCGGCGGGTTTGGCGA
CCGCGGCGTGGAGGGCAAGATGGCGGCCATCCGCTACGCGAGGGATCAGA
ACGTACCGTTTTTGGGCATTTGTTTGGGCATGCAGCTGGCGGTGGTGGAG
GCGGCGAGGCATGTGTTTGAGGGACTCGAGGTGAACTCGGAGGAGATTGA
CAAGCACGCGGAGGTGAAGGCGGTGGTGTACATGCCGGAGGTGGACAAGA
GCAAGATGGGCGGCACCATGCGACTGGGCGTGCGCAAGACCATCATCCGC
CAGCCGCAGTGCGTGGCGGCGTGGCTGTACGGCGCCACGGAGATTTACGA
GCGCCACCGACACCGCTACGAGGTGAACCCGGACATTGTGCAGCAGTTGG
AGCAGCGCGACAGCCTGCGCTTTGTGGGCGTGGACGAGAGCGCGCAGCGC
ATGGAGATTGTGGAGGACGAGGCGCACCGCTTCTTCGTGGGCACGCAGTT
CCACCCGGAGTTCACCAGCCGACCGGGGCGCCCGTCGCCGCCGTTCGTGG
GGCTGGTGATGGCGGCGGCGCGCCTGCCGTGCGAGCGCGAGCAGATCGAG
CTGCGCATGCGCAACATCCGGCGGCAGGACCCGTGGGGCGACGACGATGA
TGATGAGGCGCCCGAGCAGCCGCTGTGA