Gcaud2120.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2120.t1
Unique NameGcaud2120.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length113
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_789_length_17968_cov_4.013593contigNODE_789_length_17968_cov_4.013593:8710..9125 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4922.CAY71520
Preferred nameTRX1
PFAMsThioredoxin
Max annot lvl4751|Fungi
KEGG koko:K03671
KEGG Pathwayko04621,ko05418,map04621,map05418
GOsGO:0000011,GO:0000096,GO:0000097,GO:0000103,GO:0000302,GO:0000322,GO:0000323,GO:0000324,GO:0003674,GO:0003824,GO:0004791,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005740,GO:0005758,GO:0005773,GO:0005829,GO:0006082,GO:0006464,GO:0006518,GO:0006520,GO:0006555,GO:0006575,GO:0006749,GO:0006790,GO:0006807,GO:0006810,GO:0006888,GO:0006890,GO:0006950,GO:0006979,GO:0006996,GO:0007033,GO:0008150,GO:0008152,GO:0008652,GO:0009056,GO:0009058,GO:0009066,GO:0009067,GO:0009086,GO:0009636,GO:0009987,GO:0010035,GO:0015035,GO:0015036,GO:0016043,GO:0016053,GO:0016192,GO:0016209,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0016671,GO:0016999,GO:0017001,GO:0017144,GO:0019379,GO:0019419,GO:0019538,GO:0019725,GO:0019752,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0033554,GO:0034599,GO:0034614,GO:0034641,GO:0035690,GO:0036211,GO:0042144,GO:0042221,GO:0042493,GO:0042542,GO:0042592,GO:0042737,GO:0042743,GO:0042744,GO:0043094,GO:0043102,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043436,GO:0043603,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044267,GO:0044272,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045454,GO:0046394,GO:0046677,GO:0046907,GO:0047134,GO:0048193,GO:0048284,GO:0048308,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051186,GO:0051187,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0055114,GO:0061024,GO:0061025,GO:0061687,GO:0061691,GO:0061692,GO:0065007,GO:0065008,GO:0070013,GO:0070301,GO:0070887,GO:0071236,GO:0071265,GO:0071267,GO:0071704,GO:0071840,GO:0072593,GO:0080058,GO:0080134,GO:0080135,GO:0097237,GO:0097576,GO:0098754,GO:0098869,GO:1900407,GO:1900409,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1901700,GO:1901701,GO:1902882,GO:1902884,GO:1990355,GO:1990748
Evalue2.23e-30
EggNOG OGsCOG0526@1|root,KOG0907@2759|Eukaryota,3A886@33154|Opisthokonta,3P5A0@4751|Fungi,3QX8W@4890|Ascomycota,3RV4M@4891|Saccharomycetes
DescriptionBelongs to the thioredoxin family
COG categoryO
BRITEko00000,ko00001,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2120Gcaud2120Gracilaria caudata M_176_S67 malegeneNODE_789_length_17968_cov_4.013593 8710..9125 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2120.t1Gcaud2120.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_789_length_17968_cov_4.013593 8710..9125 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2120.t1.stop1Gcaud2120.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_789_length_17968_cov_4.013593 8710..8712 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2120.t1.CDS1Gcaud2120.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_789_length_17968_cov_4.013593 8710..8962 -
Gcaud2120.t1.CDS2Gcaud2120.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_789_length_17968_cov_4.013593 9040..9125 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2120.t1.exon1Gcaud2120.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_789_length_17968_cov_4.013593 8710..8962 -
Gcaud2120.t1.exon2Gcaud2120.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_789_length_17968_cov_4.013593 9040..9125 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2120.t1.intron1Gcaud2120.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_789_length_17968_cov_4.013593 8963..9039 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2120.t1.start1Gcaud2120.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_789_length_17968_cov_4.013593 9123..9125 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2120.t1 ID=Gcaud2120.t1|Name=Gcaud2120.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=113bp
MVKQIESKPEFESAVKEAPIVVVDFFAVWCGPCRMIAPVIEKIETELQES
NPDKVAFFKVDVDQLQELAEEMKISAMPTFLVFHNGVLDETIVGANAPKI
QQHITELLAKPQ*
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spliced messenger RNA

>Gcaud2120.t1 ID=Gcaud2120.t1|Name=Gcaud2120.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=339bp|location=Sequence derived from alignment at NODE_789_length_17968_cov_4.013593:8710..9125- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCAAGCAAATCGAATCCAAGCCGGAGTTCGAAAGCGCTGTGAAGGA
AGCGCCAATCGTGGTCGTTGACTTTTTTGCCGTGTGGTGCGGGCCGTGCA
GAATGATAGCGCCAGTGATAGAGAAGATTGAAACTGAGCTCCAGGAATCG
AACCCAGACAAGGTGGCTTTCTTCAAAGTGGACGTCGACCAGCTCCAAGA
GCTAGCTGAGGAAATGAAAATCAGCGCCATGCCCACCTTCCTAGTGTTCC
ATAACGGAGTGTTGGACGAAACTATCGTTGGTGCCAACGCACCCAAGATC
CAGCAGCACATCACCGAGCTCCTGGCTAAGCCCCAATAA
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protein sequence of Gcaud2120.t1

>Gcaud2120.t1 ID=Gcaud2120.t1|Name=Gcaud2120.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=113bp
MVKQIESKPEFESAVKEAPIVVVDFFAVWCGPCRMIAPVIEKIETELQES
NPDKVAFFKVDVDQLQELAEEMKISAMPTFLVFHNGVLDETIVGANAPKI
QQHITELLAKPQ*
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mRNA from alignment at NODE_789_length_17968_cov_4.013593:8710..9125-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2120.t1 ID=Gcaud2120.t1|Name=Gcaud2120.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=416bp|location=Sequence derived from alignment at NODE_789_length_17968_cov_4.013593:8710..9125- (Gracilaria caudata M_176_S67 male)
ATGGTCAAGCAAATCGAATCCAAGCCGGAGTTCGAAAGCGCTGTGAAGGA
AGCGCCAATCGTGGTCGTTGACTTTTTTGCCGTGTGGTAAGTTACTCCAA
GCTGTGCAATCCCTCTATTCTGTTGTGCTTTCGGCGATTCTCACCTTTTT
AATCTGTCTGCAGGTGCGGGCCGTGCAGAATGATAGCGCCAGTGATAGAG
AAGATTGAAACTGAGCTCCAGGAATCGAACCCAGACAAGGTGGCTTTCTT
CAAAGTGGACGTCGACCAGCTCCAAGAGCTAGCTGAGGAAATGAAAATCA
GCGCCATGCCCACCTTCCTAGTGTTCCATAACGGAGTGTTGGACGAAACT
ATCGTTGGTGCCAACGCACCCAAGATCCAGCAGCACATCACCGAGCTCCT
GGCTAAGCCCCAATAA
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Coding sequence (CDS) from alignment at NODE_789_length_17968_cov_4.013593:8710..9125-

>Gcaud2120.t1 ID=Gcaud2120.t1|Name=Gcaud2120.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=339bp|location=Sequence derived from alignment at NODE_789_length_17968_cov_4.013593:8710..9125- (Gracilaria caudata M_176_S67 male)
ATGGTCAAGCAAATCGAATCCAAGCCGGAGTTCGAAAGCGCTGTGAAGGA
AGCGCCAATCGTGGTCGTTGACTTTTTTGCCGTGTGGTGCGGGCCGTGCA
GAATGATAGCGCCAGTGATAGAGAAGATTGAAACTGAGCTCCAGGAATCG
AACCCAGACAAGGTGGCTTTCTTCAAAGTGGACGTCGACCAGCTCCAAGA
GCTAGCTGAGGAAATGAAAATCAGCGCCATGCCCACCTTCCTAGTGTTCC
ATAACGGAGTGTTGGACGAAACTATCGTTGGTGCCAACGCACCCAAGATC
CAGCAGCACATCACCGAGCTCCTGGCTAAGCCCCAATAA
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