Gcaud195.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud195.t1
Unique Name	Gcaud195.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	267

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_7892_length_836_cov_4.359732	contig	NODE_7892_length_836_cov_4.359732:2..800 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2903.EOD19635
PFAMs	AAA,BCS1_N
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K08900
Evalue	1.14e-48
EggNOG OGs	COG0465@1\|root,KOG0743@2759\|Eukaryota
Description	respiratory chain complex III assembly
COG category	O
BRITE	ko00000,ko03029

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud195	Gcaud195	Gracilaria caudata M_176_S67 male	gene	NODE_7892_length_836_cov_4.359732 2..800 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud195.t1.CDS1	Gcaud195.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_7892_length_836_cov_4.359732 2..800 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud195.t1.exon1	Gcaud195.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_7892_length_836_cov_4.359732 2..800 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud195.t1.start1	Gcaud195.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_7892_length_836_cov_4.359732 798..800 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud195.t1	Gcaud195.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_7892_length_836_cov_4.359732 2..800 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_7892_length_836_cov_4.359732:2..800-
coding sequence from alignment at NODE_7892_length_836_cov_4.359732:2..800-

mRNA sequence

>Gcaud195.t1 ID=Gcaud195.t1|Name=Gcaud195.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=267bp
LQWSYDRSSPDHQGRKYNLYRFTVDQQSGQGDWDEEGARHARPHDSVVLA
DGQMEAIIEDMEQFIHPNSKSWYIEHGLPHRRSYLFEGVPGTGKTSTIRV
LAGKYSLSCCFLSMTSEKFSNQQLNDALSGVPSNALLVLEDVDALFKEDR
SSANSSSLTFSGLLNALDGVTSTEGLITIITTNHADRLDPALIRGGRVDR
CFRFAPPSEKQLGILLKLFYKDASEEMVKQFIEIIVGWGESHEAPTIATL
QQLFIRYRGCSVETCVX

spliced messenger RNA

>Gcaud195.t1 ID=Gcaud195.t1|Name=Gcaud195.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=799bp|location=Sequence derived from alignment at NODE_7892_length_836_cov_4.359732:2..800- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
TTGCAGTGGAGTTATGATCGAAGTAGTCCGGACCATCAGGGAAGAAAATA
CAACTTGTATAGATTTACGGTTGATCAACAAAGTGGCCAAGGCGACTGGG
ATGAGGAAGGGGCACGTCATGCACGACCACATGATTCCGTTGTGCTGGCC
GATGGCCAAATGGAAGCTATCATAGAGGACATGGAACAGTTTATTCATCC
GAATTCCAAGAGTTGGTACATAGAGCACGGGCTTCCGCATAGGAGGAGTT
ACTTGTTCGAAGGAGTTCCTGGAACGGGAAAGACAAGCACCATTCGCGTG
CTGGCTGGCAAGTATTCTTTGTCATGCTGTTTTCTCTCGATGACAAGTGA
GAAGTTTAGTAATCAACAGCTCAACGATGCATTGAGTGGAGTGCCGTCCA
ACGCTTTACTCGTGCTGGAAGATGTGGACGCGCTGTTCAAGGAGGATCGA
TCTAGCGCCAACAGCTCATCACTCACATTCTCGGGGTTGCTCAACGCATT
GGATGGAGTGACCAGCACTGAGGGTCTAATCACAATCATCACCACGAACC
ACGCTGATCGACTTGACCCCGCTCTCATCCGTGGAGGTCGGGTTGATAGA
TGTTTTCGTTTTGCTCCGCCATCGGAGAAGCAGTTGGGTATACTTCTCAA
GTTGTTTTACAAAGACGCAAGCGAAGAGATGGTGAAGCAGTTTATCGAAA
TCATTGTTGGCTGGGGGGAGAGCCATGAAGCACCAACAATTGCAACATTA
CAGCAGTTGTTCATTCGATATCGTGGTTGCTCTGTTGAAACGTGTGTTG

protein sequence of Gcaud195.t1

>Gcaud195.t1 ID=Gcaud195.t1|Name=Gcaud195.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=267bp
LQWSYDRSSPDHQGRKYNLYRFTVDQQSGQGDWDEEGARHARPHDSVVLA
DGQMEAIIEDMEQFIHPNSKSWYIEHGLPHRRSYLFEGVPGTGKTSTIRV
LAGKYSLSCCFLSMTSEKFSNQQLNDALSGVPSNALLVLEDVDALFKEDR
SSANSSSLTFSGLLNALDGVTSTEGLITIITTNHADRLDPALIRGGRVDR
CFRFAPPSEKQLGILLKLFYKDASEEMVKQFIEIIVGWGESHEAPTIATL
QQLFIRYRGCSVETCVX

mRNA from alignment at NODE_7892_length_836_cov_4.359732:2..800-

Legend: CDSpolypeptideexonstart_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud195.t1 ID=Gcaud195.t1|Name=Gcaud195.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=799bp|location=Sequence derived from alignment at NODE_7892_length_836_cov_4.359732:2..800- (Gracilaria caudata M_176_S67 male)
TTGCAGTGGAGTTATGATCGAAGTAGTCCGGACCATCAGGGAAGAAAATA
CAACTTGTATAGATTTACGGTTGATCAACAAAGTGGCCAAGGCGACTGGG
ATGAGGAAGGGGCACGTCATGCACGACCACATGATTCCGTTGTGCTGGCC
GATGGCCAAATGGAAGCTATCATAGAGGACATGGAACAGTTTATTCATCC
GAATTCCAAGAGTTGGTACATAGAGCACGGGCTTCCGCATAGGAGGAGTT
ACTTGTTCGAAGGAGTTCCTGGAACGGGAAAGACAAGCACCATTCGCGTG
CTGGCTGGCAAGTATTCTTTGTCATGCTGTTTTCTCTCGATGACAAGTGA
GAAGTTTAGTAATCAACAGCTCAACGATGCATTGAGTGGAGTGCCGTCCA
ACGCTTTACTCGTGCTGGAAGATGTGGACGCGCTGTTCAAGGAGGATCGA
TCTAGCGCCAACAGCTCATCACTCACATTCTCGGGGTTGCTCAACGCATT
GGATGGAGTGACCAGCACTGAGGGTCTAATCACAATCATCACCACGAACC
ACGCTGATCGACTTGACCCCGCTCTCATCCGTGGAGGTCGGGTTGATAGA
TGTTTTCGTTTTGCTCCGCCATCGGAGAAGCAGTTGGGTATACTTCTCAA
GTTGTTTTACAAAGACGCAAGCGAAGAGATGGTGAAGCAGTTTATCGAAA
TCATTGTTGGCTGGGGGGAGAGCCATGAAGCACCAACAATTGCAACATTA
CAGCAGTTGTTCATTCGATATCGTGGTTGCTCTGTTGAAACGTGTGTTG

Coding sequence (CDS) from alignment at NODE_7892_length_836_cov_4.359732:2..800-

>Gcaud195.t1 ID=Gcaud195.t1|Name=Gcaud195.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=799bp|location=Sequence derived from alignment at NODE_7892_length_836_cov_4.359732:2..800- (Gracilaria caudata M_176_S67 male)
TTGCAGTGGAGTTATGATCGAAGTAGTCCGGACCATCAGGGAAGAAAATA
CAACTTGTATAGATTTACGGTTGATCAACAAAGTGGCCAAGGCGACTGGG
ATGAGGAAGGGGCACGTCATGCACGACCACATGATTCCGTTGTGCTGGCC
GATGGCCAAATGGAAGCTATCATAGAGGACATGGAACAGTTTATTCATCC
GAATTCCAAGAGTTGGTACATAGAGCACGGGCTTCCGCATAGGAGGAGTT
ACTTGTTCGAAGGAGTTCCTGGAACGGGAAAGACAAGCACCATTCGCGTG
CTGGCTGGCAAGTATTCTTTGTCATGCTGTTTTCTCTCGATGACAAGTGA
GAAGTTTAGTAATCAACAGCTCAACGATGCATTGAGTGGAGTGCCGTCCA
ACGCTTTACTCGTGCTGGAAGATGTGGACGCGCTGTTCAAGGAGGATCGA
TCTAGCGCCAACAGCTCATCACTCACATTCTCGGGGTTGCTCAACGCATT
GGATGGAGTGACCAGCACTGAGGGTCTAATCACAATCATCACCACGAACC
ACGCTGATCGACTTGACCCCGCTCTCATCCGTGGAGGTCGGGTTGATAGA
TGTTTTCGTTTTGCTCCGCCATCGGAGAAGCAGTTGGGTATACTTCTCAA
GTTGTTTTACAAAGACGCAAGCGAAGAGATGGTGAAGCAGTTTATCGAAA
TCATTGTTGGCTGGGGGGAGAGCCATGAAGCACCAACAATTGCAACATTA
CAGCAGTTGTTCATTCGATATCGTGGTTGCTCTGTTGAAACGTGTGTTG