Gcaud2059.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2059.t1
Unique NameGcaud2059.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length376
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_787_length_17995_cov_4.546805contigNODE_787_length_17995_cov_4.546805:5927..7054 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707909.1
Preferred nameacl1
PFAMsATP-grasp_2,Citrate_bind,Citrate_synt,CoA_binding,Ligase_CoA
Max annot lvl2759|Eukaryota
KEGG rclassRC00004,RC00067
KEGG koko:K01648
KEGG ReactionR00352
KEGG Pathwayko00020,ko00720,ko01100,ko01110,ko01120,ko01130,map00020,map00720,map01100,map01110,map01120,map01130
GOsGO:0003674,GO:0003824,GO:0003878,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006084,GO:0006085,GO:0006091,GO:0006101,GO:0006139,GO:0006163,GO:0006164,GO:0006629,GO:0006631,GO:0006633,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009346,GO:0009987,GO:0016053,GO:0016740,GO:0016746,GO:0016999,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019752,GO:0032787,GO:0032991,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0035383,GO:0035384,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046390,GO:0046394,GO:0046483,GO:0046912,GO:0051186,GO:0051188,GO:0055086,GO:0071616,GO:0071704,GO:0072330,GO:0072350,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
Evalue1.86e-134
EggNOG OGsCOG0045@1|root,KOG1254@2759|Eukaryota
EC2.3.3.8
DescriptionATP citrate synthase activity
COG categoryC
BRITEko00000,ko00001,ko01000,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2059Gcaud2059Gracilaria caudata M_176_S67 malegeneNODE_787_length_17995_cov_4.546805 5927..7054 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2059.t1.stop1Gcaud2059.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_787_length_17995_cov_4.546805 5927..5929 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2059.t1.CDS1Gcaud2059.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_787_length_17995_cov_4.546805 5927..7054 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2059.t1.exon1Gcaud2059.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_787_length_17995_cov_4.546805 5927..7054 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2059.t1.start1Gcaud2059.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_787_length_17995_cov_4.546805 7052..7054 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2059.t1Gcaud2059.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_787_length_17995_cov_4.546805 5927..7054 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2059.t1 ID=Gcaud2059.t1|Name=Gcaud2059.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=376bp
MLFGKRGKNNLVLLNADYQKAQTFIEERMGPEIEVFGVKGVITTFLIEPF
VSHQHEFYICIQTVRQGYRLSFGACGGIDIEDNGDKVKSVIVSCRKPDSE
SSIDRDQHVLPLLEGADLTENIKPVLTAFITACFETYVELDTPLLEMNPF
ALDKSDLPPILDSRVELDSYAAFKNAKVWGSDLEFPEPWGREKCDEERIV
QSMDDKSGASLKLTVLSPDGSMWTIVARGGASVIYADQVVQPGYGDELGN
YAEYSGNPKEQETYFYARTLLGLVTRNADGGRRALLCGGGVANFSDIAAT
LGGLQQALTDLHGKLQIENVKVFVRRGGPNHKAGLQLMRDLGNTLDIPIE
VYEPETNMTHIASLGIRWIGQGYEE*
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spliced messenger RNA

>Gcaud2059.t1 ID=Gcaud2059.t1|Name=Gcaud2059.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1128bp|location=Sequence derived from alignment at NODE_787_length_17995_cov_4.546805:5927..7054- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGTTCGGAAAACGCGGAAAGAATAATCTGGTATTACTCAATGCCGA
CTATCAAAAAGCTCAAACTTTTATTGAGGAGCGTATGGGACCAGAGATTG
AAGTATTCGGAGTCAAAGGAGTGATCACAACCTTCCTCATTGAACCGTTC
GTCTCGCATCAGCACGAATTTTATATTTGTATTCAAACAGTTCGTCAGGG
ATATCGCCTCAGTTTCGGAGCGTGTGGCGGAATTGACATCGAAGATAATG
GGGACAAGGTCAAATCAGTAATCGTTTCCTGTAGAAAACCAGATTCAGAA
TCGAGCATTGATCGTGACCAGCACGTCCTTCCACTTCTTGAAGGTGCTGA
TCTTACAGAGAACATCAAGCCTGTATTGACTGCCTTTATTACAGCATGTT
TTGAAACTTATGTGGAATTGGATACGCCCTTGTTGGAGATGAATCCATTC
GCCTTAGATAAGTCGGATTTGCCCCCAATTCTTGATTCTCGGGTTGAGCT
AGATTCGTATGCTGCTTTTAAAAACGCTAAGGTTTGGGGTTCGGACCTTG
AATTCCCAGAACCCTGGGGTCGTGAAAAGTGTGATGAAGAAAGAATCGTG
CAATCCATGGATGATAAATCTGGCGCTTCATTGAAACTCACTGTGCTTAG
TCCGGATGGAAGTATGTGGACTATAGTTGCCAGAGGTGGAGCCTCTGTCA
TATACGCAGATCAAGTTGTTCAACCTGGCTACGGTGATGAGCTCGGCAAT
TATGCCGAATATTCTGGCAATCCAAAAGAACAAGAGACTTACTTCTACGC
CAGGACGCTTTTGGGGCTCGTAACAAGAAATGCAGATGGAGGCCGTCGTG
CTTTATTGTGCGGAGGTGGTGTTGCTAATTTCAGTGATATTGCAGCTACG
CTTGGAGGTTTACAACAAGCTTTAACTGATCTTCATGGAAAGCTACAGAT
AGAAAACGTTAAGGTGTTCGTTCGACGCGGGGGCCCCAATCATAAGGCTG
GTCTTCAACTCATGAGGGATCTTGGAAATACACTTGATATTCCTATCGAG
GTTTACGAACCCGAGACAAACATGACTCATATTGCTTCTCTTGGCATTCG
ATGGATTGGACAGGGTTACGAAGAGTGA
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protein sequence of Gcaud2059.t1

>Gcaud2059.t1 ID=Gcaud2059.t1|Name=Gcaud2059.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=376bp
MLFGKRGKNNLVLLNADYQKAQTFIEERMGPEIEVFGVKGVITTFLIEPF
VSHQHEFYICIQTVRQGYRLSFGACGGIDIEDNGDKVKSVIVSCRKPDSE
SSIDRDQHVLPLLEGADLTENIKPVLTAFITACFETYVELDTPLLEMNPF
ALDKSDLPPILDSRVELDSYAAFKNAKVWGSDLEFPEPWGREKCDEERIV
QSMDDKSGASLKLTVLSPDGSMWTIVARGGASVIYADQVVQPGYGDELGN
YAEYSGNPKEQETYFYARTLLGLVTRNADGGRRALLCGGGVANFSDIAAT
LGGLQQALTDLHGKLQIENVKVFVRRGGPNHKAGLQLMRDLGNTLDIPIE
VYEPETNMTHIASLGIRWIGQGYEE*
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mRNA from alignment at NODE_787_length_17995_cov_4.546805:5927..7054-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2059.t1 ID=Gcaud2059.t1|Name=Gcaud2059.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1128bp|location=Sequence derived from alignment at NODE_787_length_17995_cov_4.546805:5927..7054- (Gracilaria caudata M_176_S67 male)
ATGTTGTTCGGAAAACGCGGAAAGAATAATCTGGTATTACTCAATGCCGA
CTATCAAAAAGCTCAAACTTTTATTGAGGAGCGTATGGGACCAGAGATTG
AAGTATTCGGAGTCAAAGGAGTGATCACAACCTTCCTCATTGAACCGTTC
GTCTCGCATCAGCACGAATTTTATATTTGTATTCAAACAGTTCGTCAGGG
ATATCGCCTCAGTTTCGGAGCGTGTGGCGGAATTGACATCGAAGATAATG
GGGACAAGGTCAAATCAGTAATCGTTTCCTGTAGAAAACCAGATTCAGAA
TCGAGCATTGATCGTGACCAGCACGTCCTTCCACTTCTTGAAGGTGCTGA
TCTTACAGAGAACATCAAGCCTGTATTGACTGCCTTTATTACAGCATGTT
TTGAAACTTATGTGGAATTGGATACGCCCTTGTTGGAGATGAATCCATTC
GCCTTAGATAAGTCGGATTTGCCCCCAATTCTTGATTCTCGGGTTGAGCT
AGATTCGTATGCTGCTTTTAAAAACGCTAAGGTTTGGGGTTCGGACCTTG
AATTCCCAGAACCCTGGGGTCGTGAAAAGTGTGATGAAGAAAGAATCGTG
CAATCCATGGATGATAAATCTGGCGCTTCATTGAAACTCACTGTGCTTAG
TCCGGATGGAAGTATGTGGACTATAGTTGCCAGAGGTGGAGCCTCTGTCA
TATACGCAGATCAAGTTGTTCAACCTGGCTACGGTGATGAGCTCGGCAAT
TATGCCGAATATTCTGGCAATCCAAAAGAACAAGAGACTTACTTCTACGC
CAGGACGCTTTTGGGGCTCGTAACAAGAAATGCAGATGGAGGCCGTCGTG
CTTTATTGTGCGGAGGTGGTGTTGCTAATTTCAGTGATATTGCAGCTACG
CTTGGAGGTTTACAACAAGCTTTAACTGATCTTCATGGAAAGCTACAGAT
AGAAAACGTTAAGGTGTTCGTTCGACGCGGGGGCCCCAATCATAAGGCTG
GTCTTCAACTCATGAGGGATCTTGGAAATACACTTGATATTCCTATCGAG
GTTTACGAACCCGAGACAAACATGACTCATATTGCTTCTCTTGGCATTCG
ATGGATTGGACAGGGTTACGAAGAGTGA
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Coding sequence (CDS) from alignment at NODE_787_length_17995_cov_4.546805:5927..7054-

>Gcaud2059.t1 ID=Gcaud2059.t1|Name=Gcaud2059.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1128bp|location=Sequence derived from alignment at NODE_787_length_17995_cov_4.546805:5927..7054- (Gracilaria caudata M_176_S67 male)
ATGTTGTTCGGAAAACGCGGAAAGAATAATCTGGTATTACTCAATGCCGA
CTATCAAAAAGCTCAAACTTTTATTGAGGAGCGTATGGGACCAGAGATTG
AAGTATTCGGAGTCAAAGGAGTGATCACAACCTTCCTCATTGAACCGTTC
GTCTCGCATCAGCACGAATTTTATATTTGTATTCAAACAGTTCGTCAGGG
ATATCGCCTCAGTTTCGGAGCGTGTGGCGGAATTGACATCGAAGATAATG
GGGACAAGGTCAAATCAGTAATCGTTTCCTGTAGAAAACCAGATTCAGAA
TCGAGCATTGATCGTGACCAGCACGTCCTTCCACTTCTTGAAGGTGCTGA
TCTTACAGAGAACATCAAGCCTGTATTGACTGCCTTTATTACAGCATGTT
TTGAAACTTATGTGGAATTGGATACGCCCTTGTTGGAGATGAATCCATTC
GCCTTAGATAAGTCGGATTTGCCCCCAATTCTTGATTCTCGGGTTGAGCT
AGATTCGTATGCTGCTTTTAAAAACGCTAAGGTTTGGGGTTCGGACCTTG
AATTCCCAGAACCCTGGGGTCGTGAAAAGTGTGATGAAGAAAGAATCGTG
CAATCCATGGATGATAAATCTGGCGCTTCATTGAAACTCACTGTGCTTAG
TCCGGATGGAAGTATGTGGACTATAGTTGCCAGAGGTGGAGCCTCTGTCA
TATACGCAGATCAAGTTGTTCAACCTGGCTACGGTGATGAGCTCGGCAAT
TATGCCGAATATTCTGGCAATCCAAAAGAACAAGAGACTTACTTCTACGC
CAGGACGCTTTTGGGGCTCGTAACAAGAAATGCAGATGGAGGCCGTCGTG
CTTTATTGTGCGGAGGTGGTGTTGCTAATTTCAGTGATATTGCAGCTACG
CTTGGAGGTTTACAACAAGCTTTAACTGATCTTCATGGAAAGCTACAGAT
AGAAAACGTTAAGGTGTTCGTTCGACGCGGGGGCCCCAATCATAAGGCTG
GTCTTCAACTCATGAGGGATCTTGGAAATACACTTGATATTCCTATCGAG
GTTTACGAACCCGAGACAAACATGACTCATATTGCTTCTCTTGGCATTCG
ATGGATTGGACAGGGTTACGAAGAGTGA
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