Gcaud2090.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2090.t1
Unique NameGcaud2090.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length293
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_781_length_18128_cov_4.694018contigNODE_781_length_18128_cov_4.694018:525..1484 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2903.EOD15867
Preferred nameRQCD1
PFAMsRcd1
Max annot lvl2759|Eukaryota
KEGG koko:K12606,ko:K13754
KEGG TC2.A.19.4.4
KEGG Pathwayko03018,map03018
GOsGO:0000003,GO:0000075,GO:0000077,GO:0000278,GO:0000288,GO:0000289,GO:0000932,GO:0000956,GO:0001932,GO:0001934,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0005102,GO:0005154,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006139,GO:0006355,GO:0006357,GO:0006401,GO:0006402,GO:0006417,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006977,GO:0007044,GO:0007049,GO:0007093,GO:0007154,GO:0007165,GO:0007166,GO:0007276,GO:0007283,GO:0007346,GO:0007548,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010033,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010562,GO:0010564,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0010646,GO:0010647,GO:0010648,GO:0010948,GO:0016043,GO:0016070,GO:0016071,GO:0017148,GO:0019219,GO:0019220,GO:0019221,GO:0019222,GO:0019439,GO:0019899,GO:0019900,GO:0019904,GO:0019953,GO:0022402,GO:0022414,GO:0022607,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0030014,GO:0030015,GO:0030330,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031399,GO:0031401,GO:0031570,GO:0031571,GO:0031581,GO:0032268,GO:0032269,GO:0032270,GO:0032501,GO:0032502,GO:0032504,GO:0032784,GO:0032786,GO:0032968,GO:0032991,GO:0033135,GO:0033138,GO:0033143,GO:0033144,GO:0033146,GO:0033147,GO:0033554,GO:0034097,GO:0034243,GO:0034248,GO:0034249,GO:0034329,GO:0034330,GO:0034641,GO:0034655,GO:0035556,GO:0035770,GO:0036464,GO:0042058,GO:0042221,GO:0042325,GO:0042327,GO:0042770,GO:0042802,GO:0042803,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044444,GO:0044464,GO:0044703,GO:0044773,GO:0044774,GO:0044783,GO:0044819,GO:0045742,GO:0045786,GO:0045787,GO:0045893,GO:0045930,GO:0045935,GO:0045937,GO:0045944,GO:0046483,GO:0046700,GO:0046983,GO:0048232,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048609,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051248,GO:0051252,GO:0051254,GO:0051704,GO:0051716,GO:0051726,GO:0060255,GO:0065007,GO:0065009,GO:0070851,GO:0070887,GO:0071156,GO:0071158,GO:0071310,GO:0071345,GO:0071704,GO:0071840,GO:0072331,GO:0072395,GO:0072401,GO:0072413,GO:0072422,GO:0072431,GO:0080090,GO:0090068,GO:0090304,GO:0097159,GO:1901184,GO:1901186,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902400,GO:1902402,GO:1902403,GO:1902680,GO:1902806,GO:1902807,GO:1903047,GO:1903506,GO:1903508,GO:1990904,GO:2000045,GO:2000112,GO:2000113,GO:2000134,GO:2000325,GO:2000327,GO:2001141
Evalue1.01e-140
EggNOG OGsCOG5209@1|root,KOG3036@2759|Eukaryota
Descriptionpositive regulation of nuclear receptor transcription coactivator activity
COG categoryG
BRITEko00000,ko00001,ko02000,ko03019
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2090Gcaud2090Gracilaria caudata M_176_S67 malegeneNODE_781_length_18128_cov_4.694018 525..1484 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2090.t1Gcaud2090.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_781_length_18128_cov_4.694018 525..1484 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2090.t1.start1Gcaud2090.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_781_length_18128_cov_4.694018 525..527 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2090.t1.CDS1Gcaud2090.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_781_length_18128_cov_4.694018 525..614 +
Gcaud2090.t1.CDS2Gcaud2090.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_781_length_18128_cov_4.694018 696..1484 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2090.t1.exon1Gcaud2090.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_781_length_18128_cov_4.694018 525..614 +
Gcaud2090.t1.exon2Gcaud2090.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_781_length_18128_cov_4.694018 696..1484 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2090.t1.intron1Gcaud2090.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_781_length_18128_cov_4.694018 615..695 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2090.t1.stop1Gcaud2090.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_781_length_18128_cov_4.694018 1482..1484 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2090.t1 ID=Gcaud2090.t1|Name=Gcaud2090.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=293bp
MNARDLNASMKAASEAHVRELVQDLTRPEKRENALLELSKKREAVADLAP
RLWYSLGTIAALLQEIISIYPMLAPPALSAHASNRVCNALALLQCVASHP
MTRTHFLSAHIPLFLYPFLNTVSKTRPFEYLRLTSLGVIGALVKMDAPDV
INFLLQTEIIPLCLRIMETGSELSKTVATFIVQKILLDDNGLAYICATPE
RFYAVSTVLSNMVSALVEAPSARLLKHVIRCYLRLSENHRAREALRQCLP
EPLNDVTFATVLEDDPATKKWLLHLLYQLDQSPHVGLQAGVV*
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spliced messenger RNA

>Gcaud2090.t1 ID=Gcaud2090.t1|Name=Gcaud2090.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=879bp|location=Sequence derived from alignment at NODE_781_length_18128_cov_4.694018:525..1484+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACGCACGGGATCTAAACGCGTCGATGAAAGCTGCAAGCGAGGCACA
TGTAAGAGAACTTGTTCAAGATCTTACCAGACCTGAGAAGCGAGAGAATG
CCCTACTTGAACTAAGCAAGAAAAGGGAAGCGGTCGCCGACCTTGCGCCA
AGGTTGTGGTATAGCCTTGGTACCATCGCTGCCCTGCTTCAAGAGATCAT
ATCAATCTACCCAATGCTAGCTCCGCCGGCTCTCTCAGCTCATGCAAGCA
ACCGGGTATGCAACGCCCTCGCCCTTTTGCAATGCGTGGCGTCTCATCCC
ATGACCCGCACCCACTTTCTTTCGGCACACATTCCGTTGTTCTTGTACCC
GTTCTTGAATACCGTTTCTAAGACAAGACCCTTTGAATACTTGCGTTTAA
CATCACTCGGAGTCATTGGTGCTTTGGTGAAAATGGACGCTCCAGACGTC
ATTAACTTCTTACTGCAGACGGAGATTATTCCCTTATGTCTTCGTATCAT
GGAAACTGGCTCAGAATTGAGCAAAACAGTAGCCACATTCATTGTGCAGA
AAATATTGCTGGACGACAATGGACTGGCGTATATATGCGCGACGCCTGAG
AGATTTTACGCCGTTTCCACAGTGTTGAGTAATATGGTGAGTGCCCTTGT
TGAAGCACCGAGCGCCCGACTATTGAAGCATGTCATACGGTGCTACCTTC
GGCTGTCCGAAAATCATCGTGCCAGGGAGGCGTTGCGCCAATGTCTCCCG
GAACCACTCAACGATGTGACATTTGCAACCGTCTTGGAAGATGATCCAGC
GACGAAGAAATGGTTACTGCATCTGCTGTATCAGTTAGACCAGTCTCCAC
ATGTTGGATTGCAAGCAGGTGTGGTGTAA
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protein sequence of Gcaud2090.t1

>Gcaud2090.t1 ID=Gcaud2090.t1|Name=Gcaud2090.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=293bp
MNARDLNASMKAASEAHVRELVQDLTRPEKRENALLELSKKREAVADLAP
RLWYSLGTIAALLQEIISIYPMLAPPALSAHASNRVCNALALLQCVASHP
MTRTHFLSAHIPLFLYPFLNTVSKTRPFEYLRLTSLGVIGALVKMDAPDV
INFLLQTEIIPLCLRIMETGSELSKTVATFIVQKILLDDNGLAYICATPE
RFYAVSTVLSNMVSALVEAPSARLLKHVIRCYLRLSENHRAREALRQCLP
EPLNDVTFATVLEDDPATKKWLLHLLYQLDQSPHVGLQAGVV*
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mRNA from alignment at NODE_781_length_18128_cov_4.694018:525..1484+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2090.t1 ID=Gcaud2090.t1|Name=Gcaud2090.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=960bp|location=Sequence derived from alignment at NODE_781_length_18128_cov_4.694018:525..1484+ (Gracilaria caudata M_176_S67 male)
ATGAACGCACGGGATCTAAACGCGTCGATGAAAGCTGCAAGCGAGGCACA
TGTAAGAGAACTTGTTCAAGATCTTACCAGACCTGAGAAGGTGAGTCGGC
CCCTATTCTTCAACGTTGGGCGACACAACTAATGTATTCTAACCACTTCG
GAATGCGAATGCAACTTGCAGCGAGAGAATGCCCTACTTGAACTAAGCAA
GAAAAGGGAAGCGGTCGCCGACCTTGCGCCAAGGTTGTGGTATAGCCTTG
GTACCATCGCTGCCCTGCTTCAAGAGATCATATCAATCTACCCAATGCTA
GCTCCGCCGGCTCTCTCAGCTCATGCAAGCAACCGGGTATGCAACGCCCT
CGCCCTTTTGCAATGCGTGGCGTCTCATCCCATGACCCGCACCCACTTTC
TTTCGGCACACATTCCGTTGTTCTTGTACCCGTTCTTGAATACCGTTTCT
AAGACAAGACCCTTTGAATACTTGCGTTTAACATCACTCGGAGTCATTGG
TGCTTTGGTGAAAATGGACGCTCCAGACGTCATTAACTTCTTACTGCAGA
CGGAGATTATTCCCTTATGTCTTCGTATCATGGAAACTGGCTCAGAATTG
AGCAAAACAGTAGCCACATTCATTGTGCAGAAAATATTGCTGGACGACAA
TGGACTGGCGTATATATGCGCGACGCCTGAGAGATTTTACGCCGTTTCCA
CAGTGTTGAGTAATATGGTGAGTGCCCTTGTTGAAGCACCGAGCGCCCGA
CTATTGAAGCATGTCATACGGTGCTACCTTCGGCTGTCCGAAAATCATCG
TGCCAGGGAGGCGTTGCGCCAATGTCTCCCGGAACCACTCAACGATGTGA
CATTTGCAACCGTCTTGGAAGATGATCCAGCGACGAAGAAATGGTTACTG
CATCTGCTGTATCAGTTAGACCAGTCTCCACATGTTGGATTGCAAGCAGG
TGTGGTGTAA
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Coding sequence (CDS) from alignment at NODE_781_length_18128_cov_4.694018:525..1484+

>Gcaud2090.t1 ID=Gcaud2090.t1|Name=Gcaud2090.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=879bp|location=Sequence derived from alignment at NODE_781_length_18128_cov_4.694018:525..1484+ (Gracilaria caudata M_176_S67 male)
ATGAACGCACGGGATCTAAACGCGTCGATGAAAGCTGCAAGCGAGGCACA
TGTAAGAGAACTTGTTCAAGATCTTACCAGACCTGAGAAGCGAGAGAATG
CCCTACTTGAACTAAGCAAGAAAAGGGAAGCGGTCGCCGACCTTGCGCCA
AGGTTGTGGTATAGCCTTGGTACCATCGCTGCCCTGCTTCAAGAGATCAT
ATCAATCTACCCAATGCTAGCTCCGCCGGCTCTCTCAGCTCATGCAAGCA
ACCGGGTATGCAACGCCCTCGCCCTTTTGCAATGCGTGGCGTCTCATCCC
ATGACCCGCACCCACTTTCTTTCGGCACACATTCCGTTGTTCTTGTACCC
GTTCTTGAATACCGTTTCTAAGACAAGACCCTTTGAATACTTGCGTTTAA
CATCACTCGGAGTCATTGGTGCTTTGGTGAAAATGGACGCTCCAGACGTC
ATTAACTTCTTACTGCAGACGGAGATTATTCCCTTATGTCTTCGTATCAT
GGAAACTGGCTCAGAATTGAGCAAAACAGTAGCCACATTCATTGTGCAGA
AAATATTGCTGGACGACAATGGACTGGCGTATATATGCGCGACGCCTGAG
AGATTTTACGCCGTTTCCACAGTGTTGAGTAATATGGTGAGTGCCCTTGT
TGAAGCACCGAGCGCCCGACTATTGAAGCATGTCATACGGTGCTACCTTC
GGCTGTCCGAAAATCATCGTGCCAGGGAGGCGTTGCGCCAATGTCTCCCG
GAACCACTCAACGATGTGACATTTGCAACCGTCTTGGAAGATGATCCAGC
GACGAAGAAATGGTTACTGCATCTGCTGTATCAGTTAGACCAGTCTCCAC
ATGTTGGATTGCAAGCAGGTGTGGTGTAA
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