Gcaud2093.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2093.t1
Unique Name	Gcaud2093.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	577

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_781_length_18128_cov_4.694018	contig	NODE_781_length_18128_cov_4.694018:5876..7606 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	67593.Physo128229
PFAMs	EF-hand_7,Na_Ca_ex
Max annot lvl	4776\|Peronosporales
Evalue	1.03e-133
EggNOG OGs	28NP9@1\|root,2QV8Y@2759\|Eukaryota,3QEIZ@4776\|Peronosporales
Description	Sodium/calcium exchanger protein
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2093	Gcaud2093	Gracilaria caudata M_176_S67 male	gene	NODE_781_length_18128_cov_4.694018 5876..7606 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2093.t1.stop1	Gcaud2093.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_781_length_18128_cov_4.694018 5876..5878 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2093.t1.CDS1	Gcaud2093.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_781_length_18128_cov_4.694018 5876..7606 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2093.t1.exon1	Gcaud2093.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_781_length_18128_cov_4.694018 5876..7606 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2093.t1.start1	Gcaud2093.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_781_length_18128_cov_4.694018 7604..7606 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2093.t1	Gcaud2093.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_781_length_18128_cov_4.694018 5876..7606 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_781_length_18128_cov_4.694018:5876..7606-
coding sequence from alignment at NODE_781_length_18128_cov_4.694018:5876..7606-

mRNA sequence

>Gcaud2093.t1 ID=Gcaud2093.t1|Name=Gcaud2093.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=577bp
MESLFIEPSSLPGGELWERACKHIGSKAAENATVPASVSQAVRCDVSPTS
GFVQVLMLLCVYGFILYSASTLIANGSELLLMVPSLKGIVGSVVLPILGA
VPDGAIVLFSGLGENAQEELSVGVGALAGSTSMLLTIPWFLSILAGRVNI
GPSGIPNYLQRPKLNPPNNIDLDRTGIETRGMVQTAGRTMLLTAITYVVI
QLAALQTGVFFKRDETEYATRIAAAQERMPALLCLIVCLSFFFWYLYSQI
RSSPEQDKFRQDRDVEVTEKRIANGDLSLTDAFREIWDHSDESTPLHPSR
LNDVLKFFFRHYDKNNSESIDKLELQYLMKDLREPCSPEEIAEMYTAMDQ
NDNGQIELEEFLRYMPKFIASRAQKWREEGPIPPPTADEGAGGETTDEEE
HEEIPEDLYHKDPRQRSINIMKRSFSMMAAGTALVLIFSDPMVGVMSEVG
RRIGIPAFYISFILAPLASNASELIAAYSYALKKTRKTTTISLSTLLGAA
IMNNTFVLAIFMILIVVKKLAWQFTAETASILAVEVVVFFISQKRVMTVR
DGLIVLSMFPISLFIVAFLENYVGLD*

spliced messenger RNA

>Gcaud2093.t1 ID=Gcaud2093.t1|Name=Gcaud2093.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1731bp|location=Sequence derived from alignment at NODE_781_length_18128_cov_4.694018:5876..7606- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGTCCTTATTCATCGAACCGTCTTCCCTTCCAGGAGGTGAACTGTG
GGAAAGAGCATGTAAACACATAGGAAGCAAGGCTGCGGAAAATGCAACGG
TGCCCGCAAGCGTATCACAAGCCGTTCGTTGCGATGTGTCTCCGACGAGT
GGTTTTGTCCAAGTCCTCATGCTGCTTTGTGTATATGGTTTTATTCTTTA
CTCTGCTTCAACTCTAATTGCGAACGGTAGCGAGCTGCTCTTGATGGTAC
CGTCGTTGAAAGGAATTGTCGGTTCCGTTGTCCTTCCAATATTAGGAGCA
GTTCCAGATGGTGCAATCGTTTTGTTTTCAGGACTAGGCGAAAATGCACA
GGAAGAGCTTTCTGTTGGTGTTGGAGCTCTTGCCGGCTCCACGAGCATGC
TACTCACAATCCCGTGGTTCTTATCGATTCTTGCTGGTCGTGTGAACATA
GGACCTAGTGGGATTCCGAATTATTTGCAACGACCGAAGCTCAACCCGCC
TAACAACATAGACCTCGACAGAACCGGGATTGAGACTAGAGGAATGGTTC
AGACAGCGGGGCGCACCATGCTGCTCACTGCTATAACCTACGTTGTCATT
CAGCTTGCAGCATTGCAAACAGGGGTTTTCTTCAAAAGAGATGAAACTGA
ATATGCTACTAGGATTGCTGCTGCTCAAGAACGTATGCCCGCTCTGCTTT
GCCTTATTGTGTGCTTGAGCTTCTTTTTCTGGTACCTATATTCTCAAATT
AGGTCTTCACCTGAGCAAGATAAGTTTCGCCAGGACCGTGACGTTGAAGT
GACGGAGAAGCGCATTGCCAACGGGGATCTCTCTCTCACAGACGCATTTA
GGGAGATTTGGGACCACTCAGATGAGTCTACCCCTCTCCACCCGAGCAGA
CTTAATGATGTTCTCAAGTTTTTCTTCCGTCATTACGATAAGAACAACAG
TGAGTCAATTGATAAACTGGAGCTTCAGTATCTCATGAAGGACCTGCGTG
AGCCTTGTTCTCCGGAAGAAATTGCTGAAATGTACACAGCAATGGATCAG
AATGATAATGGTCAGATTGAACTCGAAGAGTTCCTGAGGTACATGCCCAA
ATTCATTGCCTCAAGGGCACAAAAATGGCGTGAGGAAGGGCCTATCCCAC
CCCCTACCGCTGATGAGGGAGCTGGTGGGGAAACAACAGACGAAGAAGAA
CATGAAGAGATTCCCGAAGATTTATATCACAAAGATCCTAGACAAAGAAG
CATCAATATTATGAAGAGGTCGTTCTCTATGATGGCAGCGGGCACCGCTC
TTGTCTTAATCTTTTCGGATCCTATGGTCGGTGTAATGAGCGAAGTTGGA
CGGAGGATTGGCATTCCGGCATTCTACATTTCGTTTATTCTTGCTCCGCT
TGCAAGCAATGCGTCTGAGCTAATCGCTGCGTACAGTTACGCTTTGAAGA
AGACGCGCAAGACGACCACAATATCCCTTTCAACACTACTGGGTGCAGCA
ATTATGAACAACACTTTCGTGCTGGCCATTTTTATGATCCTAATCGTGGT
GAAGAAACTTGCATGGCAGTTCACAGCAGAAACAGCTTCAATTCTTGCTG
TCGAAGTTGTAGTCTTCTTCATAAGTCAAAAACGCGTGATGACTGTGCGA
GATGGGCTCATTGTTCTGTCCATGTTCCCAATATCGTTGTTTATTGTTGC
GTTCTTAGAGAATTATGTTGGCCTGGACTGA

protein sequence of Gcaud2093.t1

>Gcaud2093.t1 ID=Gcaud2093.t1|Name=Gcaud2093.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=577bp
MESLFIEPSSLPGGELWERACKHIGSKAAENATVPASVSQAVRCDVSPTS
GFVQVLMLLCVYGFILYSASTLIANGSELLLMVPSLKGIVGSVVLPILGA
VPDGAIVLFSGLGENAQEELSVGVGALAGSTSMLLTIPWFLSILAGRVNI
GPSGIPNYLQRPKLNPPNNIDLDRTGIETRGMVQTAGRTMLLTAITYVVI
QLAALQTGVFFKRDETEYATRIAAAQERMPALLCLIVCLSFFFWYLYSQI
RSSPEQDKFRQDRDVEVTEKRIANGDLSLTDAFREIWDHSDESTPLHPSR
LNDVLKFFFRHYDKNNSESIDKLELQYLMKDLREPCSPEEIAEMYTAMDQ
NDNGQIELEEFLRYMPKFIASRAQKWREEGPIPPPTADEGAGGETTDEEE
HEEIPEDLYHKDPRQRSINIMKRSFSMMAAGTALVLIFSDPMVGVMSEVG
RRIGIPAFYISFILAPLASNASELIAAYSYALKKTRKTTTISLSTLLGAA
IMNNTFVLAIFMILIVVKKLAWQFTAETASILAVEVVVFFISQKRVMTVR
DGLIVLSMFPISLFIVAFLENYVGLD*

mRNA from alignment at NODE_781_length_18128_cov_4.694018:5876..7606-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2093.t1 ID=Gcaud2093.t1|Name=Gcaud2093.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1731bp|location=Sequence derived from alignment at NODE_781_length_18128_cov_4.694018:5876..7606- (Gracilaria caudata M_176_S67 male)
ATGGAGTCCTTATTCATCGAACCGTCTTCCCTTCCAGGAGGTGAACTGTG
GGAAAGAGCATGTAAACACATAGGAAGCAAGGCTGCGGAAAATGCAACGG
TGCCCGCAAGCGTATCACAAGCCGTTCGTTGCGATGTGTCTCCGACGAGT
GGTTTTGTCCAAGTCCTCATGCTGCTTTGTGTATATGGTTTTATTCTTTA
CTCTGCTTCAACTCTAATTGCGAACGGTAGCGAGCTGCTCTTGATGGTAC
CGTCGTTGAAAGGAATTGTCGGTTCCGTTGTCCTTCCAATATTAGGAGCA
GTTCCAGATGGTGCAATCGTTTTGTTTTCAGGACTAGGCGAAAATGCACA
GGAAGAGCTTTCTGTTGGTGTTGGAGCTCTTGCCGGCTCCACGAGCATGC
TACTCACAATCCCGTGGTTCTTATCGATTCTTGCTGGTCGTGTGAACATA
GGACCTAGTGGGATTCCGAATTATTTGCAACGACCGAAGCTCAACCCGCC
TAACAACATAGACCTCGACAGAACCGGGATTGAGACTAGAGGAATGGTTC
AGACAGCGGGGCGCACCATGCTGCTCACTGCTATAACCTACGTTGTCATT
CAGCTTGCAGCATTGCAAACAGGGGTTTTCTTCAAAAGAGATGAAACTGA
ATATGCTACTAGGATTGCTGCTGCTCAAGAACGTATGCCCGCTCTGCTTT
GCCTTATTGTGTGCTTGAGCTTCTTTTTCTGGTACCTATATTCTCAAATT
AGGTCTTCACCTGAGCAAGATAAGTTTCGCCAGGACCGTGACGTTGAAGT
GACGGAGAAGCGCATTGCCAACGGGGATCTCTCTCTCACAGACGCATTTA
GGGAGATTTGGGACCACTCAGATGAGTCTACCCCTCTCCACCCGAGCAGA
CTTAATGATGTTCTCAAGTTTTTCTTCCGTCATTACGATAAGAACAACAG
TGAGTCAATTGATAAACTGGAGCTTCAGTATCTCATGAAGGACCTGCGTG
AGCCTTGTTCTCCGGAAGAAATTGCTGAAATGTACACAGCAATGGATCAG
AATGATAATGGTCAGATTGAACTCGAAGAGTTCCTGAGGTACATGCCCAA
ATTCATTGCCTCAAGGGCACAAAAATGGCGTGAGGAAGGGCCTATCCCAC
CCCCTACCGCTGATGAGGGAGCTGGTGGGGAAACAACAGACGAAGAAGAA
CATGAAGAGATTCCCGAAGATTTATATCACAAAGATCCTAGACAAAGAAG
CATCAATATTATGAAGAGGTCGTTCTCTATGATGGCAGCGGGCACCGCTC
TTGTCTTAATCTTTTCGGATCCTATGGTCGGTGTAATGAGCGAAGTTGGA
CGGAGGATTGGCATTCCGGCATTCTACATTTCGTTTATTCTTGCTCCGCT
TGCAAGCAATGCGTCTGAGCTAATCGCTGCGTACAGTTACGCTTTGAAGA
AGACGCGCAAGACGACCACAATATCCCTTTCAACACTACTGGGTGCAGCA
ATTATGAACAACACTTTCGTGCTGGCCATTTTTATGATCCTAATCGTGGT
GAAGAAACTTGCATGGCAGTTCACAGCAGAAACAGCTTCAATTCTTGCTG
TCGAAGTTGTAGTCTTCTTCATAAGTCAAAAACGCGTGATGACTGTGCGA
GATGGGCTCATTGTTCTGTCCATGTTCCCAATATCGTTGTTTATTGTTGC
GTTCTTAGAGAATTATGTTGGCCTGGACTGA

Coding sequence (CDS) from alignment at NODE_781_length_18128_cov_4.694018:5876..7606-

>Gcaud2093.t1 ID=Gcaud2093.t1|Name=Gcaud2093.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1731bp|location=Sequence derived from alignment at NODE_781_length_18128_cov_4.694018:5876..7606- (Gracilaria caudata M_176_S67 male)
ATGGAGTCCTTATTCATCGAACCGTCTTCCCTTCCAGGAGGTGAACTGTG
GGAAAGAGCATGTAAACACATAGGAAGCAAGGCTGCGGAAAATGCAACGG
TGCCCGCAAGCGTATCACAAGCCGTTCGTTGCGATGTGTCTCCGACGAGT
GGTTTTGTCCAAGTCCTCATGCTGCTTTGTGTATATGGTTTTATTCTTTA
CTCTGCTTCAACTCTAATTGCGAACGGTAGCGAGCTGCTCTTGATGGTAC
CGTCGTTGAAAGGAATTGTCGGTTCCGTTGTCCTTCCAATATTAGGAGCA
GTTCCAGATGGTGCAATCGTTTTGTTTTCAGGACTAGGCGAAAATGCACA
GGAAGAGCTTTCTGTTGGTGTTGGAGCTCTTGCCGGCTCCACGAGCATGC
TACTCACAATCCCGTGGTTCTTATCGATTCTTGCTGGTCGTGTGAACATA
GGACCTAGTGGGATTCCGAATTATTTGCAACGACCGAAGCTCAACCCGCC
TAACAACATAGACCTCGACAGAACCGGGATTGAGACTAGAGGAATGGTTC
AGACAGCGGGGCGCACCATGCTGCTCACTGCTATAACCTACGTTGTCATT
CAGCTTGCAGCATTGCAAACAGGGGTTTTCTTCAAAAGAGATGAAACTGA
ATATGCTACTAGGATTGCTGCTGCTCAAGAACGTATGCCCGCTCTGCTTT
GCCTTATTGTGTGCTTGAGCTTCTTTTTCTGGTACCTATATTCTCAAATT
AGGTCTTCACCTGAGCAAGATAAGTTTCGCCAGGACCGTGACGTTGAAGT
GACGGAGAAGCGCATTGCCAACGGGGATCTCTCTCTCACAGACGCATTTA
GGGAGATTTGGGACCACTCAGATGAGTCTACCCCTCTCCACCCGAGCAGA
CTTAATGATGTTCTCAAGTTTTTCTTCCGTCATTACGATAAGAACAACAG
TGAGTCAATTGATAAACTGGAGCTTCAGTATCTCATGAAGGACCTGCGTG
AGCCTTGTTCTCCGGAAGAAATTGCTGAAATGTACACAGCAATGGATCAG
AATGATAATGGTCAGATTGAACTCGAAGAGTTCCTGAGGTACATGCCCAA
ATTCATTGCCTCAAGGGCACAAAAATGGCGTGAGGAAGGGCCTATCCCAC
CCCCTACCGCTGATGAGGGAGCTGGTGGGGAAACAACAGACGAAGAAGAA
CATGAAGAGATTCCCGAAGATTTATATCACAAAGATCCTAGACAAAGAAG
CATCAATATTATGAAGAGGTCGTTCTCTATGATGGCAGCGGGCACCGCTC
TTGTCTTAATCTTTTCGGATCCTATGGTCGGTGTAATGAGCGAAGTTGGA
CGGAGGATTGGCATTCCGGCATTCTACATTTCGTTTATTCTTGCTCCGCT
TGCAAGCAATGCGTCTGAGCTAATCGCTGCGTACAGTTACGCTTTGAAGA
AGACGCGCAAGACGACCACAATATCCCTTTCAACACTACTGGGTGCAGCA
ATTATGAACAACACTTTCGTGCTGGCCATTTTTATGATCCTAATCGTGGT
GAAGAAACTTGCATGGCAGTTCACAGCAGAAACAGCTTCAATTCTTGCTG
TCGAAGTTGTAGTCTTCTTCATAAGTCAAAAACGCGTGATGACTGTGCGA
GATGGGCTCATTGTTCTGTCCATGTTCCCAATATCGTTGTTTATTGTTGC
GTTCTTAGAGAATTATGTTGGCCTGGACTGA