Gcaud2094.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2094.t1
Unique Name	Gcaud2094.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	660

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_781_length_18128_cov_4.694018	contig	NODE_781_length_18128_cov_4.694018:11097..13319 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005708313.1
Preferred name	DNAJC11
PFAMs	DUF3395,DnaJ
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K03575,ko:K09531
KEGG Pathway	ko03410,map03410
GOs	GO:0000003,GO:0001671,GO:0003006,GO:0003674,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0006605,GO:0006626,GO:0006810,GO:0006839,GO:0006886,GO:0006996,GO:0007005,GO:0007006,GO:0007007,GO:0007275,GO:0008047,GO:0008104,GO:0008150,GO:0009314,GO:0009416,GO:0009536,GO:0009628,GO:0009642,GO:0009791,GO:0009987,GO:0010228,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0017038,GO:0019867,GO:0022414,GO:0030150,GO:0030234,GO:0031090,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0032501,GO:0032502,GO:0032781,GO:0033036,GO:0033365,GO:0034613,GO:0042407,GO:0042886,GO:0043085,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043462,GO:0044093,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044743,GO:0045184,GO:0046907,GO:0048608,GO:0048731,GO:0048856,GO:0050790,GO:0050896,GO:0051179,GO:0051234,GO:0051336,GO:0051345,GO:0051641,GO:0051649,GO:0055085,GO:0055122,GO:0060589,GO:0060590,GO:0061024,GO:0061458,GO:0065002,GO:0065007,GO:0065009,GO:0070585,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0072594,GO:0072655,GO:0098588,GO:0098772,GO:0098805,GO:1990542
Evalue	1.39e-65
EggNOG OGs	COG0484@1\|root,KOG0718@2759\|Eukaryota
Description	response to very low light intensity stimulus
COG category	O
BRITE	ko00000,ko00001,ko01000,ko03110,ko03400

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2094	Gcaud2094	Gracilaria caudata M_176_S67 male	gene	NODE_781_length_18128_cov_4.694018 11097..13319 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2094.t1	Gcaud2094.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_781_length_18128_cov_4.694018 11097..13319 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2094.t1.stop1	Gcaud2094.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_781_length_18128_cov_4.694018 11097..11099 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2094.t1.CDS1	Gcaud2094.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_781_length_18128_cov_4.694018 11097..11219 -
Gcaud2094.t1.CDS2	Gcaud2094.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_781_length_18128_cov_4.694018 11345..11374 -
Gcaud2094.t1.CDS3	Gcaud2094.t1.CDS3	Gracilaria caudata M_176_S67 male	CDS	NODE_781_length_18128_cov_4.694018 11493..13319 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2094.t1.exon1	Gcaud2094.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_781_length_18128_cov_4.694018 11097..11219 -
Gcaud2094.t1.exon2	Gcaud2094.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_781_length_18128_cov_4.694018 11345..11374 -
Gcaud2094.t1.exon3	Gcaud2094.t1.exon3	Gracilaria caudata M_176_S67 male	exon	NODE_781_length_18128_cov_4.694018 11493..13319 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2094.t1.intron1	Gcaud2094.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_781_length_18128_cov_4.694018 11220..11344 -
Gcaud2094.t1.intron2	Gcaud2094.t1.intron2	Gracilaria caudata M_176_S67 male	intron	NODE_781_length_18128_cov_4.694018 11375..11492 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2094.t1.start1	Gcaud2094.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_781_length_18128_cov_4.694018 13317..13319 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_781_length_18128_cov_4.694018:11097..13319-
coding sequence from alignment at NODE_781_length_18128_cov_4.694018:11097..13319-

mRNA sequence

>Gcaud2094.t1 ID=Gcaud2094.t1|Name=Gcaud2094.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=660bp
MTDPGEEIEEDLYTILKVSRDANEGDLRSSFRKLSQQFHPDKHMGEQAKA
TATDHFTRVKEAYEILSNNKFRRIYNEFGLDAARAAAMPGMELVPYNDLA
ERFRSESMGGNGGTGINTPRDAYFTVSNSVEPRIDATGLSIALEDGDYIN
TKNLAVCTQVGIATVATAYVSQNNTVVVRYAAACQGSRYQSRASGGPGEV
ALSFRRQIDPHMQAEVTAHVPLEESQSTTYGLKTFRSLSQNMTGAFDVSY
DPERKDLTSALTYTRSFSERCTASASWAYGAASGYAFSWRRNAYDEYVSD
AVAEKDQEAELFEDETSESEEASGSLWRQRISMLLKKLIYFIEPMGLRWT
ARWSVMDASLSCLIRRPIGLHAPLFEKCEPTGPGGGFVRARASLSVMGWE
MELGGGRRYVLADTAWTMSVAFGTLGVVWRLKMSRSGHRFSLPVVLHSAT
ADPKTATIAAITSSALVSAIQFLIVEPWQQRKDHNEREEAKSRRADVLSQ
GRQDAEAALGMMQQAIERIRKEEEEVEIDGKKGSGLIIKKAVYGVTKSVS
KMKFTDDDLRNREIEVEAADVTGAVQCLVAKSALQVVSATKSTLPGFWDP
SAYGEKEDLVLPELAKLELTGSEGQLQEKRAGCRIRFTHPLEFSSSLLCV
LSRVDAYPC*

spliced messenger RNA

>Gcaud2094.t1 ID=Gcaud2094.t1|Name=Gcaud2094.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1980bp|location=Sequence derived from alignment at NODE_781_length_18128_cov_4.694018:11097..13319- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGATCCTGGCGAAGAAATAGAAGAAGATCTGTATACCATCCTCAA
AGTTTCAAGAGATGCCAACGAAGGAGATCTGCGTTCATCATTTCGTAAAT
TATCTCAGCAATTCCACCCAGATAAACATATGGGAGAGCAAGCAAAGGCA
ACTGCTACAGATCACTTTACCAGAGTCAAAGAAGCTTACGAGATACTTTC
CAATAATAAGTTCAGACGTATTTATAATGAGTTTGGTCTGGACGCCGCTC
GTGCTGCTGCTATGCCTGGCATGGAACTTGTGCCTTACAATGATCTGGCG
GAACGTTTCAGAAGTGAATCAATGGGTGGTAATGGAGGTACTGGAATTAA
CACCCCAAGAGATGCGTATTTCACTGTTTCCAACTCTGTAGAACCGAGAA
TTGACGCTACAGGACTCTCCATTGCTCTAGAAGACGGGGATTACATCAAC
ACAAAGAACCTGGCTGTGTGTACACAAGTTGGAATAGCGACGGTTGCTAC
TGCATATGTGTCACAGAACAATACTGTTGTGGTTCGATATGCCGCTGCTT
GTCAAGGCTCTCGGTACCAGAGTCGTGCTTCGGGTGGACCTGGAGAGGTG
GCTCTCTCATTCAGACGTCAGATTGATCCTCACATGCAGGCAGAAGTCAC
AGCTCATGTACCACTGGAGGAGAGTCAATCTACAACCTACGGTCTTAAAA
CCTTCCGCTCTCTTTCTCAAAACATGACGGGTGCATTCGACGTTTCTTAC
GACCCTGAACGAAAGGATCTTACCTCTGCGCTAACGTACACGAGATCGTT
CAGTGAACGATGCACAGCCAGCGCTTCTTGGGCATATGGGGCTGCCTCTG
GTTATGCGTTTTCATGGCGGAGGAATGCCTACGATGAATATGTTTCTGAC
GCTGTAGCAGAAAAAGACCAGGAGGCTGAGTTGTTCGAGGATGAAACTTC
TGAATCCGAAGAAGCTTCTGGAAGTCTCTGGCGTCAGAGGATATCTATGC
TACTCAAGAAGCTAATTTACTTCATAGAACCGATGGGACTGCGTTGGACG
GCGAGATGGAGCGTGATGGATGCTTCTTTATCTTGCCTCATACGGAGACC
CATAGGGCTACATGCTCCTTTATTCGAGAAGTGCGAACCTACAGGACCGG
GCGGGGGGTTTGTTCGAGCTCGCGCTTCGCTTAGTGTGATGGGTTGGGAA
ATGGAACTAGGTGGTGGTCGAAGGTATGTTCTCGCCGACACAGCGTGGAC
AATGTCTGTAGCCTTTGGAACTCTGGGGGTAGTCTGGAGGCTTAAAATGA
GTAGAAGTGGGCACAGGTTCAGTTTACCCGTCGTACTTCATTCTGCAACA
GCCGATCCGAAGACGGCGACAATCGCAGCAATCACTAGTTCAGCGCTTGT
TAGTGCGATTCAGTTTCTAATTGTAGAACCGTGGCAGCAGAGAAAGGATC
ATAATGAAAGAGAGGAAGCCAAATCGCGTCGGGCTGATGTTCTGAGTCAA
GGACGCCAGGATGCGGAGGCGGCTCTCGGCATGATGCAGCAAGCAATCGA
AAGAATTAGGAAAGAGGAAGAAGAGGTGGAAATTGATGGGAAGAAAGGCT
CTGGATTGATTATCAAGAAGGCTGTGTATGGTGTCACGAAGAGCGTAAGC
AAGATGAAGTTCACAGACGATGATCTTAGGAATAGGGAAATCGAAGTCGA
AGCTGCCGATGTAACTGGAGCTGTTCAGTGCCTTGTTGCCAAAAGTGCTC
TGCAAGTTGTTTCAGCCACGAAATCGACACTGCCAGGCTTCTGGGACCCA
AGCGCCTACGGTGAAAAAGAAGACTTGGTTTTGCCTGAACTGGCAAAGCT
AGAATTGACAGGATCCGAAGGGCAACTTCAAGAAAAGCGCGCCGGATGTA
GAATACGATTCACACATCCACTGGAATTTTCGTCGTCCCTGCTTTGTGTT
TTGTCTCGAGTAGATGCGTATCCATGTTAG

protein sequence of Gcaud2094.t1

>Gcaud2094.t1 ID=Gcaud2094.t1|Name=Gcaud2094.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=660bp
MTDPGEEIEEDLYTILKVSRDANEGDLRSSFRKLSQQFHPDKHMGEQAKA
TATDHFTRVKEAYEILSNNKFRRIYNEFGLDAARAAAMPGMELVPYNDLA
ERFRSESMGGNGGTGINTPRDAYFTVSNSVEPRIDATGLSIALEDGDYIN
TKNLAVCTQVGIATVATAYVSQNNTVVVRYAAACQGSRYQSRASGGPGEV
ALSFRRQIDPHMQAEVTAHVPLEESQSTTYGLKTFRSLSQNMTGAFDVSY
DPERKDLTSALTYTRSFSERCTASASWAYGAASGYAFSWRRNAYDEYVSD
AVAEKDQEAELFEDETSESEEASGSLWRQRISMLLKKLIYFIEPMGLRWT
ARWSVMDASLSCLIRRPIGLHAPLFEKCEPTGPGGGFVRARASLSVMGWE
MELGGGRRYVLADTAWTMSVAFGTLGVVWRLKMSRSGHRFSLPVVLHSAT
ADPKTATIAAITSSALVSAIQFLIVEPWQQRKDHNEREEAKSRRADVLSQ
GRQDAEAALGMMQQAIERIRKEEEEVEIDGKKGSGLIIKKAVYGVTKSVS
KMKFTDDDLRNREIEVEAADVTGAVQCLVAKSALQVVSATKSTLPGFWDP
SAYGEKEDLVLPELAKLELTGSEGQLQEKRAGCRIRFTHPLEFSSSLLCV
LSRVDAYPC*

mRNA from alignment at NODE_781_length_18128_cov_4.694018:11097..13319-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2094.t1 ID=Gcaud2094.t1|Name=Gcaud2094.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2223bp|location=Sequence derived from alignment at NODE_781_length_18128_cov_4.694018:11097..13319- (Gracilaria caudata M_176_S67 male)
ATGACCGATCCTGGCGAAGAAATAGAAGAAGATCTGTATACCATCCTCAA
AGTTTCAAGAGATGCCAACGAAGGAGATCTGCGTTCATCATTTCGTAAAT
TATCTCAGCAATTCCACCCAGATAAACATATGGGAGAGCAAGCAAAGGCA
ACTGCTACAGATCACTTTACCAGAGTCAAAGAAGCTTACGAGATACTTTC
CAATAATAAGTTCAGACGTATTTATAATGAGTTTGGTCTGGACGCCGCTC
GTGCTGCTGCTATGCCTGGCATGGAACTTGTGCCTTACAATGATCTGGCG
GAACGTTTCAGAAGTGAATCAATGGGTGGTAATGGAGGTACTGGAATTAA
CACCCCAAGAGATGCGTATTTCACTGTTTCCAACTCTGTAGAACCGAGAA
TTGACGCTACAGGACTCTCCATTGCTCTAGAAGACGGGGATTACATCAAC
ACAAAGAACCTGGCTGTGTGTACACAAGTTGGAATAGCGACGGTTGCTAC
TGCATATGTGTCACAGAACAATACTGTTGTGGTTCGATATGCCGCTGCTT
GTCAAGGCTCTCGGTACCAGAGTCGTGCTTCGGGTGGACCTGGAGAGGTG
GCTCTCTCATTCAGACGTCAGATTGATCCTCACATGCAGGCAGAAGTCAC
AGCTCATGTACCACTGGAGGAGAGTCAATCTACAACCTACGGTCTTAAAA
CCTTCCGCTCTCTTTCTCAAAACATGACGGGTGCATTCGACGTTTCTTAC
GACCCTGAACGAAAGGATCTTACCTCTGCGCTAACGTACACGAGATCGTT
CAGTGAACGATGCACAGCCAGCGCTTCTTGGGCATATGGGGCTGCCTCTG
GTTATGCGTTTTCATGGCGGAGGAATGCCTACGATGAATATGTTTCTGAC
GCTGTAGCAGAAAAAGACCAGGAGGCTGAGTTGTTCGAGGATGAAACTTC
TGAATCCGAAGAAGCTTCTGGAAGTCTCTGGCGTCAGAGGATATCTATGC
TACTCAAGAAGCTAATTTACTTCATAGAACCGATGGGACTGCGTTGGACG
GCGAGATGGAGCGTGATGGATGCTTCTTTATCTTGCCTCATACGGAGACC
CATAGGGCTACATGCTCCTTTATTCGAGAAGTGCGAACCTACAGGACCGG
GCGGGGGGTTTGTTCGAGCTCGCGCTTCGCTTAGTGTGATGGGTTGGGAA
ATGGAACTAGGTGGTGGTCGAAGGTATGTTCTCGCCGACACAGCGTGGAC
AATGTCTGTAGCCTTTGGAACTCTGGGGGTAGTCTGGAGGCTTAAAATGA
GTAGAAGTGGGCACAGGTTCAGTTTACCCGTCGTACTTCATTCTGCAACA
GCCGATCCGAAGACGGCGACAATCGCAGCAATCACTAGTTCAGCGCTTGT
TAGTGCGATTCAGTTTCTAATTGTAGAACCGTGGCAGCAGAGAAAGGATC
ATAATGAAAGAGAGGAAGCCAAATCGCGTCGGGCTGATGTTCTGAGTCAA
GGACGCCAGGATGCGGAGGCGGCTCTCGGCATGATGCAGCAAGCAATCGA
AAGAATTAGGAAAGAGGAAGAAGAGGTGGAAATTGATGGGAAGAAAGGCT
CTGGATTGATTATCAAGAAGGCTGTGTATGGTGTCACGAAGAGCGTAAGC
AAGATGAAGTTCACAGACGATGATCTTAGGAATAGGGAAATCGAAGTCGA
AGCTGCCGATGTAACTGGAGCTGTTCAGTGCCTTGTTGCCAAAAGTGCTC
TGCAAGTTGTTTCAGCCACGAAATCGACACTGCCAGGCTTCTGGGACCCA
AGCGCCTACGGTGAAAAAGAAGACTTGGTATTGAAAGTGTGGTACTTGTT
CAAGACAGAGAAGCATGAATGTATCATCCGAGACGACGAACCAATTGAAC
TGCCGGTGTCCTCACACCGCGTAAACGAATGGTCTTGATGGAAAGGTTTT
GCCTGAACTGGCAAAGCTAGAATTGGTTGGTTGTACATATCTGCAATAAG
CTCCCAGGTCAGTGATAAGGCTAGAAGGACGACTCTGTTCACTAACATGG
AACTACAATGCGAGCAATGTCATCTCCTTTTGATCATATGAACCCTTTAG
ACAGGATCCGAAGGGCAACTTCAAGAAAAGCGCGCCGGATGTAGAATACG
ATTCACACATCCACTGGAATTTTCGTCGTCCCTGCTTTGTGTTTTGTCTC
GAGTAGATGCGTATCCATGTTAG

Coding sequence (CDS) from alignment at NODE_781_length_18128_cov_4.694018:11097..13319-

>Gcaud2094.t1 ID=Gcaud2094.t1|Name=Gcaud2094.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1980bp|location=Sequence derived from alignment at NODE_781_length_18128_cov_4.694018:11097..13319- (Gracilaria caudata M_176_S67 male)
ATGACCGATCCTGGCGAAGAAATAGAAGAAGATCTGTATACCATCCTCAA
AGTTTCAAGAGATGCCAACGAAGGAGATCTGCGTTCATCATTTCGTAAAT
TATCTCAGCAATTCCACCCAGATAAACATATGGGAGAGCAAGCAAAGGCA
ACTGCTACAGATCACTTTACCAGAGTCAAAGAAGCTTACGAGATACTTTC
CAATAATAAGTTCAGACGTATTTATAATGAGTTTGGTCTGGACGCCGCTC
GTGCTGCTGCTATGCCTGGCATGGAACTTGTGCCTTACAATGATCTGGCG
GAACGTTTCAGAAGTGAATCAATGGGTGGTAATGGAGGTACTGGAATTAA
CACCCCAAGAGATGCGTATTTCACTGTTTCCAACTCTGTAGAACCGAGAA
TTGACGCTACAGGACTCTCCATTGCTCTAGAAGACGGGGATTACATCAAC
ACAAAGAACCTGGCTGTGTGTACACAAGTTGGAATAGCGACGGTTGCTAC
TGCATATGTGTCACAGAACAATACTGTTGTGGTTCGATATGCCGCTGCTT
GTCAAGGCTCTCGGTACCAGAGTCGTGCTTCGGGTGGACCTGGAGAGGTG
GCTCTCTCATTCAGACGTCAGATTGATCCTCACATGCAGGCAGAAGTCAC
AGCTCATGTACCACTGGAGGAGAGTCAATCTACAACCTACGGTCTTAAAA
CCTTCCGCTCTCTTTCTCAAAACATGACGGGTGCATTCGACGTTTCTTAC
GACCCTGAACGAAAGGATCTTACCTCTGCGCTAACGTACACGAGATCGTT
CAGTGAACGATGCACAGCCAGCGCTTCTTGGGCATATGGGGCTGCCTCTG
GTTATGCGTTTTCATGGCGGAGGAATGCCTACGATGAATATGTTTCTGAC
GCTGTAGCAGAAAAAGACCAGGAGGCTGAGTTGTTCGAGGATGAAACTTC
TGAATCCGAAGAAGCTTCTGGAAGTCTCTGGCGTCAGAGGATATCTATGC
TACTCAAGAAGCTAATTTACTTCATAGAACCGATGGGACTGCGTTGGACG
GCGAGATGGAGCGTGATGGATGCTTCTTTATCTTGCCTCATACGGAGACC
CATAGGGCTACATGCTCCTTTATTCGAGAAGTGCGAACCTACAGGACCGG
GCGGGGGGTTTGTTCGAGCTCGCGCTTCGCTTAGTGTGATGGGTTGGGAA
ATGGAACTAGGTGGTGGTCGAAGGTATGTTCTCGCCGACACAGCGTGGAC
AATGTCTGTAGCCTTTGGAACTCTGGGGGTAGTCTGGAGGCTTAAAATGA
GTAGAAGTGGGCACAGGTTCAGTTTACCCGTCGTACTTCATTCTGCAACA
GCCGATCCGAAGACGGCGACAATCGCAGCAATCACTAGTTCAGCGCTTGT
TAGTGCGATTCAGTTTCTAATTGTAGAACCGTGGCAGCAGAGAAAGGATC
ATAATGAAAGAGAGGAAGCCAAATCGCGTCGGGCTGATGTTCTGAGTCAA
GGACGCCAGGATGCGGAGGCGGCTCTCGGCATGATGCAGCAAGCAATCGA
AAGAATTAGGAAAGAGGAAGAAGAGGTGGAAATTGATGGGAAGAAAGGCT
CTGGATTGATTATCAAGAAGGCTGTGTATGGTGTCACGAAGAGCGTAAGC
AAGATGAAGTTCACAGACGATGATCTTAGGAATAGGGAAATCGAAGTCGA
AGCTGCCGATGTAACTGGAGCTGTTCAGTGCCTTGTTGCCAAAAGTGCTC
TGCAAGTTGTTTCAGCCACGAAATCGACACTGCCAGGCTTCTGGGACCCA
AGCGCCTACGGTGAAAAAGAAGACTTGGTTTTGCCTGAACTGGCAAAGCT
AGAATTGACAGGATCCGAAGGGCAACTTCAAGAAAAGCGCGCCGGATGTA
GAATACGATTCACACATCCACTGGAATTTTCGTCGTCCCTGCTTTGTGTT
TTGTCTCGAGTAGATGCGTATCCATGTTAG