Gcaud1445.t2 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1445.t2
Unique Name	Gcaud1445.t2
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	450

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1021_length_14946_cov_4.146752	contig	NODE_1021_length_14946_cov_4.146752:4320..5735 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	580340.Tlie_0746
Preferred name	prfA
PFAMs	PCRF,RF-1
Max annot lvl	508458\|Synergistetes
KEGG ko	ko:K02835
Evalue	7.55e-72
EggNOG OGs	COG0216@1\|root,COG0216@2\|Bacteria,3TA5F@508458\|Synergistetes
Description	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
COG category	J
BRITE	ko00000,ko03012

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1445	Gcaud1445	Gracilaria caudata M_176_S67 male	gene	NODE_1021_length_14946_cov_4.146752 4320..5735 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1445.t2	Gcaud1445.t2	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1021_length_14946_cov_4.146752 4320..5735 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1445.t2.stop1	Gcaud1445.t2.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1021_length_14946_cov_4.146752 4320..4322 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1445.t2.CDS1	Gcaud1445.t2.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1021_length_14946_cov_4.146752 4320..5437 -
Gcaud1445.t2.CDS2	Gcaud1445.t2.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_1021_length_14946_cov_4.146752 5504..5735 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1445.t2.exon1	Gcaud1445.t2.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1021_length_14946_cov_4.146752 4320..5437 -
Gcaud1445.t2.exon2	Gcaud1445.t2.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_1021_length_14946_cov_4.146752 5504..5735 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1445.t2.intron1	Gcaud1445.t2.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_1021_length_14946_cov_4.146752 5438..5503 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1445.t2.start1	Gcaud1445.t2.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1021_length_14946_cov_4.146752 5733..5735 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1021_length_14946_cov_4.146752:4320..5735-
coding sequence from alignment at NODE_1021_length_14946_cov_4.146752:4320..5735-

mRNA sequence

>Gcaud1445.t2 ID=Gcaud1445.t2|Name=Gcaud1445.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=450bp
MLIVSGVRGGLLRFTGTARPHGFINWTTRSRYRSFLSTSDSPICALSGED
VDKLFSHLVPLVVRTKSEHERIARQRSESLDKLQIQVRDAFQILKESDHG
SDSEMRQLALEEIQMLQAERRQFATQIISHLLQQACNEDAEPARSHSAPQ
SATSSAIVEIRAGAGGDEAALFVSDLFEMYEKFAARKRWKSRILSQSITS
LGGLRELILRISGPLVYETVRLEAGVHRVQRVPATETSGRVHTSTASVAV
LHDDAKLAKRFVLQESDVKFDVYRASGAGGQHVNKTESAVRATHIPTGLI
ATSQEDRSQHRNKAIALEALAARLAAKLAAEEAAKKVGERRAQLGSTIGE
RSDRIRTYNYQQRRVTDHRIVPSSGLLDIIPSAKDIVGDKSVGLDNVLEG
GIELERLIGGVSRARELETLYSLIEEAKKVRNTMSEELGDRFAIKPDVV*

spliced messenger RNA

>Gcaud1445.t2 ID=Gcaud1445.t2|Name=Gcaud1445.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1350bp|location=Sequence derived from alignment at NODE_1021_length_14946_cov_4.146752:4320..5735- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGATCGTCAGTGGAGTTCGAGGCGGCCTATTGCGATTTACAGGCAC
CGCAAGACCACATGGTTTCATTAATTGGACAACTCGTTCCAGGTATCGCT
CCTTTTTGTCCACCTCAGATTCCCCAATATGCGCGCTCAGTGGCGAGGAC
GTTGATAAACTTTTTTCCCATCTGGTCCCACTCGTTGTACGAACAAAATC
CGAACATGAACGCATCGCCAGGCAGAGAAGCGAGTCCTTGGATAAGCTTC
AAATTCAAGTTCGAGACGCCTTTCAAATTTTGAAAGAGAGCGATCATGGT
TCTGATTCAGAGATGCGACAGCTTGCCCTCGAGGAGATTCAGATGTTACA
AGCAGAGAGACGTCAGTTTGCAACACAAATAATATCACATCTGCTCCAAC
AAGCGTGCAATGAGGATGCGGAACCAGCTCGATCGCATTCCGCTCCTCAA
TCTGCAACGAGTAGCGCTATAGTGGAAATAAGGGCGGGCGCAGGCGGGGA
TGAAGCCGCCCTGTTCGTTTCAGATCTGTTCGAAATGTATGAAAAGTTTG
CGGCACGCAAGAGATGGAAGTCAAGAATTCTGTCCCAATCAATCACATCC
CTAGGGGGATTGCGTGAGTTGATTCTGCGAATTTCCGGGCCTCTTGTGTA
CGAAACCGTGCGCCTCGAGGCCGGGGTACATCGGGTGCAAAGGGTGCCGG
CCACAGAGACTAGTGGTAGGGTTCATACGAGCACGGCGAGTGTGGCTGTG
TTACATGATGATGCCAAATTGGCCAAACGATTTGTCTTGCAAGAAAGTGA
CGTCAAGTTTGACGTTTACCGAGCAAGTGGAGCTGGGGGCCAACATGTGA
ACAAGACAGAGTCTGCAGTGCGTGCAACACATATTCCAACAGGATTGATA
GCAACCAGCCAAGAGGACCGTTCTCAACATCGGAACAAAGCGATTGCGTT
GGAAGCTTTGGCGGCTCGGCTGGCGGCAAAGCTGGCCGCAGAAGAGGCTG
CGAAAAAGGTTGGCGAGCGTAGGGCGCAACTGGGGAGTACGATTGGCGAA
CGAAGTGATAGGATACGAACATACAACTATCAGCAGCGTAGAGTAACGGA
CCATCGTATTGTGCCCTCATCGGGGTTGCTGGATATTATACCGTCAGCAA
AAGATATAGTCGGAGACAAGAGTGTGGGTCTAGACAATGTTCTGGAGGGC
GGCATAGAACTGGAGCGCTTAATTGGGGGCGTCTCTAGAGCGCGAGAGCT
TGAGACTTTGTACTCGCTAATTGAAGAAGCAAAGAAGGTGAGAAATACCA
TGTCAGAGGAGTTAGGTGACAGATTTGCAATCAAACCGGATGTGGTTTGA

protein sequence of Gcaud1445.t2

>Gcaud1445.t2 ID=Gcaud1445.t2|Name=Gcaud1445.t2|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=450bp
MLIVSGVRGGLLRFTGTARPHGFINWTTRSRYRSFLSTSDSPICALSGED
VDKLFSHLVPLVVRTKSEHERIARQRSESLDKLQIQVRDAFQILKESDHG
SDSEMRQLALEEIQMLQAERRQFATQIISHLLQQACNEDAEPARSHSAPQ
SATSSAIVEIRAGAGGDEAALFVSDLFEMYEKFAARKRWKSRILSQSITS
LGGLRELILRISGPLVYETVRLEAGVHRVQRVPATETSGRVHTSTASVAV
LHDDAKLAKRFVLQESDVKFDVYRASGAGGQHVNKTESAVRATHIPTGLI
ATSQEDRSQHRNKAIALEALAARLAAKLAAEEAAKKVGERRAQLGSTIGE
RSDRIRTYNYQQRRVTDHRIVPSSGLLDIIPSAKDIVGDKSVGLDNVLEG
GIELERLIGGVSRARELETLYSLIEEAKKVRNTMSEELGDRFAIKPDVV*

mRNA from alignment at NODE_1021_length_14946_cov_4.146752:4320..5735-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1445.t2 ID=Gcaud1445.t2|Name=Gcaud1445.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1416bp|location=Sequence derived from alignment at NODE_1021_length_14946_cov_4.146752:4320..5735- (Gracilaria caudata M_176_S67 male)
ATGTTGATCGTCAGTGGAGTTCGAGGCGGCCTATTGCGATTTACAGGCAC
CGCAAGACCACATGGTTTCATTAATTGGACAACTCGTTCCAGGTATCGCT
CCTTTTTGTCCACCTCAGATTCCCCAATATGCGCGCTCAGTGGCGAGGAC
GTTGATAAACTTTTTTCCCATCTGGTCCCACTCGTTGTACGAACAAAATC
CGAACATGAACGCATCGCCAGGCAGAGAAGCGGTAAGTCTTTCGATGCAA
CACATCAATCCCATCTACAAGCGCTCACTCCAGTCGCATCATTGACAGAG
TCCTTGGATAAGCTTCAAATTCAAGTTCGAGACGCCTTTCAAATTTTGAA
AGAGAGCGATCATGGTTCTGATTCAGAGATGCGACAGCTTGCCCTCGAGG
AGATTCAGATGTTACAAGCAGAGAGACGTCAGTTTGCAACACAAATAATA
TCACATCTGCTCCAACAAGCGTGCAATGAGGATGCGGAACCAGCTCGATC
GCATTCCGCTCCTCAATCTGCAACGAGTAGCGCTATAGTGGAAATAAGGG
CGGGCGCAGGCGGGGATGAAGCCGCCCTGTTCGTTTCAGATCTGTTCGAA
ATGTATGAAAAGTTTGCGGCACGCAAGAGATGGAAGTCAAGAATTCTGTC
CCAATCAATCACATCCCTAGGGGGATTGCGTGAGTTGATTCTGCGAATTT
CCGGGCCTCTTGTGTACGAAACCGTGCGCCTCGAGGCCGGGGTACATCGG
GTGCAAAGGGTGCCGGCCACAGAGACTAGTGGTAGGGTTCATACGAGCAC
GGCGAGTGTGGCTGTGTTACATGATGATGCCAAATTGGCCAAACGATTTG
TCTTGCAAGAAAGTGACGTCAAGTTTGACGTTTACCGAGCAAGTGGAGCT
GGGGGCCAACATGTGAACAAGACAGAGTCTGCAGTGCGTGCAACACATAT
TCCAACAGGATTGATAGCAACCAGCCAAGAGGACCGTTCTCAACATCGGA
ACAAAGCGATTGCGTTGGAAGCTTTGGCGGCTCGGCTGGCGGCAAAGCTG
GCCGCAGAAGAGGCTGCGAAAAAGGTTGGCGAGCGTAGGGCGCAACTGGG
GAGTACGATTGGCGAACGAAGTGATAGGATACGAACATACAACTATCAGC
AGCGTAGAGTAACGGACCATCGTATTGTGCCCTCATCGGGGTTGCTGGAT
ATTATACCGTCAGCAAAAGATATAGTCGGAGACAAGAGTGTGGGTCTAGA
CAATGTTCTGGAGGGCGGCATAGAACTGGAGCGCTTAATTGGGGGCGTCT
CTAGAGCGCGAGAGCTTGAGACTTTGTACTCGCTAATTGAAGAAGCAAAG
AAGGTGAGAAATACCATGTCAGAGGAGTTAGGTGACAGATTTGCAATCAA
ACCGGATGTGGTTTGA

Coding sequence (CDS) from alignment at NODE_1021_length_14946_cov_4.146752:4320..5735-

>Gcaud1445.t2 ID=Gcaud1445.t2|Name=Gcaud1445.t2|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1350bp|location=Sequence derived from alignment at NODE_1021_length_14946_cov_4.146752:4320..5735- (Gracilaria caudata M_176_S67 male)
ATGTTGATCGTCAGTGGAGTTCGAGGCGGCCTATTGCGATTTACAGGCAC
CGCAAGACCACATGGTTTCATTAATTGGACAACTCGTTCCAGGTATCGCT
CCTTTTTGTCCACCTCAGATTCCCCAATATGCGCGCTCAGTGGCGAGGAC
GTTGATAAACTTTTTTCCCATCTGGTCCCACTCGTTGTACGAACAAAATC
CGAACATGAACGCATCGCCAGGCAGAGAAGCGAGTCCTTGGATAAGCTTC
AAATTCAAGTTCGAGACGCCTTTCAAATTTTGAAAGAGAGCGATCATGGT
TCTGATTCAGAGATGCGACAGCTTGCCCTCGAGGAGATTCAGATGTTACA
AGCAGAGAGACGTCAGTTTGCAACACAAATAATATCACATCTGCTCCAAC
AAGCGTGCAATGAGGATGCGGAACCAGCTCGATCGCATTCCGCTCCTCAA
TCTGCAACGAGTAGCGCTATAGTGGAAATAAGGGCGGGCGCAGGCGGGGA
TGAAGCCGCCCTGTTCGTTTCAGATCTGTTCGAAATGTATGAAAAGTTTG
CGGCACGCAAGAGATGGAAGTCAAGAATTCTGTCCCAATCAATCACATCC
CTAGGGGGATTGCGTGAGTTGATTCTGCGAATTTCCGGGCCTCTTGTGTA
CGAAACCGTGCGCCTCGAGGCCGGGGTACATCGGGTGCAAAGGGTGCCGG
CCACAGAGACTAGTGGTAGGGTTCATACGAGCACGGCGAGTGTGGCTGTG
TTACATGATGATGCCAAATTGGCCAAACGATTTGTCTTGCAAGAAAGTGA
CGTCAAGTTTGACGTTTACCGAGCAAGTGGAGCTGGGGGCCAACATGTGA
ACAAGACAGAGTCTGCAGTGCGTGCAACACATATTCCAACAGGATTGATA
GCAACCAGCCAAGAGGACCGTTCTCAACATCGGAACAAAGCGATTGCGTT
GGAAGCTTTGGCGGCTCGGCTGGCGGCAAAGCTGGCCGCAGAAGAGGCTG
CGAAAAAGGTTGGCGAGCGTAGGGCGCAACTGGGGAGTACGATTGGCGAA
CGAAGTGATAGGATACGAACATACAACTATCAGCAGCGTAGAGTAACGGA
CCATCGTATTGTGCCCTCATCGGGGTTGCTGGATATTATACCGTCAGCAA
AAGATATAGTCGGAGACAAGAGTGTGGGTCTAGACAATGTTCTGGAGGGC
GGCATAGAACTGGAGCGCTTAATTGGGGGCGTCTCTAGAGCGCGAGAGCT
TGAGACTTTGTACTCGCTAATTGAAGAAGCAAAGAAGGTGAGAAATACCA
TGTCAGAGGAGTTAGGTGACAGATTTGCAATCAAACCGGATGTGGTTTGA