Gcaud2126.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2126.t1
Unique NameGcaud2126.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length359
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_778_length_18212_cov_4.691463contigNODE_778_length_18212_cov_4.691463:10628..11704 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706581.1
Preferred nameFA2H
PFAMsCyt-b5,FA_hydroxylase
Max annot lvl2759|Eukaryota
KEGG koko:K01265,ko:K08849,ko:K13091,ko:K19703,ko:K19706,ko:K20409
KEGG Pathwayko04150,ko04217,ko04668,map04150,map04217,map04668
GOsGO:0000038,GO:0000170,GO:0001949,GO:0003674,GO:0003824,GO:0004497,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006082,GO:0006629,GO:0006631,GO:0006643,GO:0006644,GO:0006664,GO:0006665,GO:0006673,GO:0006675,GO:0006687,GO:0006793,GO:0006796,GO:0006807,GO:0007009,GO:0007272,GO:0007275,GO:0007399,GO:0007417,GO:0007422,GO:0008150,GO:0008152,GO:0008366,GO:0008544,GO:0008610,GO:0009058,GO:0009888,GO:0009913,GO:0009987,GO:0010001,GO:0010256,GO:0012505,GO:0014003,GO:0014037,GO:0014044,GO:0016020,GO:0016021,GO:0016043,GO:0016491,GO:0019637,GO:0019752,GO:0021782,GO:0022008,GO:0022010,GO:0022011,GO:0030148,GO:0030154,GO:0030258,GO:0030855,GO:0031224,GO:0031984,GO:0032286,GO:0032287,GO:0032291,GO:0032292,GO:0032501,GO:0032502,GO:0032787,GO:0042063,GO:0042127,GO:0042175,GO:0042552,GO:0042634,GO:0043217,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043588,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046467,GO:0048468,GO:0048513,GO:0048709,GO:0048731,GO:0048732,GO:0048733,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051239,GO:0052722,GO:0055114,GO:0060429,GO:0061024,GO:0065007,GO:0071704,GO:0071840,GO:0080132,GO:0098827,GO:1901135,GO:1901564,GO:1901566,GO:1901576,GO:1903509
Evalue1.05e-121
EggNOG OGsCOG3000@1|root,COG5274@1|root,KOG0537@2759|Eukaryota,KOG0539@2759|Eukaryota
EC1.14.18.6,1.14.18.7,2.7.11.1,3.4.11.18
Descriptionfatty acid alpha-hydroxylase activity
COG categoryI
BRITEko00000,ko00001,ko01000,ko01001,ko01002,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2126Gcaud2126Gracilaria caudata M_176_S67 malegeneNODE_778_length_18212_cov_4.691463 10628..11704 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2126.t1.stop1Gcaud2126.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_778_length_18212_cov_4.691463 10628..10630 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2126.t1.CDS1Gcaud2126.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_778_length_18212_cov_4.691463 10628..11704 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2126.t1.exon1Gcaud2126.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_778_length_18212_cov_4.691463 10628..11704 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2126.t1.start1Gcaud2126.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_778_length_18212_cov_4.691463 11702..11704 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2126.t1Gcaud2126.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_778_length_18212_cov_4.691463 10628..11704 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2126.t1 ID=Gcaud2126.t1|Name=Gcaud2126.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=359bp
MCQSETLRKRKRGNHAQTDNASSSAVGYALTSKVVSHHAAPNDAWVIYKG
NVYDITLFLESHPGGADILHDKLGTDVTDAMSGDQPGSHKHSPFAYKMLS
KYKIGQLAGANGEEVIDGNTDPVTGEQLVHWDKPILHQVGMLGDKYHRWI
HSFPTTDHTVKMFTNDTIEGLTKCPWYVPLVFWLPVMALEIVHYIYLIGG
VTNFSMLTFAAMFGLGFIGWLLFEYTLHRFVFHMRTTGYYANIFHFLIHG
HHHITPMDFDRLVFPPVPALLVGSPIWFLAPRLFGVNFGYPWLLGFAVGY
LVYDMTHFWIHHAVPRNSFLKRQKKRHVYHHYFQHSVNFGISNPLFDYIF
KTISETAE*
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spliced messenger RNA

>Gcaud2126.t1 ID=Gcaud2126.t1|Name=Gcaud2126.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1077bp|location=Sequence derived from alignment at NODE_778_length_18212_cov_4.691463:10628..11704- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGTCAGTCGGAAACTTTGAGGAAACGTAAGCGAGGAAACCACGCGCA
GACAGACAACGCCTCAAGCAGCGCTGTGGGTTATGCACTCACCAGCAAAG
TCGTATCGCATCATGCCGCCCCAAACGACGCATGGGTGATATACAAGGGC
AATGTGTACGACATCACTCTGTTCCTCGAGTCGCATCCAGGAGGTGCCGA
CATCCTGCACGATAAGCTTGGTACCGACGTGACCGACGCAATGAGCGGCG
ACCAACCTGGCAGCCACAAACACTCCCCATTTGCCTACAAGATGCTCTCC
AAGTACAAGATTGGACAGCTGGCCGGCGCAAATGGTGAGGAAGTGATTGA
CGGAAATACAGATCCTGTCACGGGTGAGCAACTGGTTCATTGGGACAAAC
CCATTCTGCACCAGGTTGGTATGCTCGGTGACAAGTATCATCGATGGATC
CATTCATTTCCTACCACTGACCACACCGTTAAGATGTTCACTAACGATAC
CATCGAAGGTCTGACAAAGTGTCCGTGGTACGTGCCACTCGTTTTCTGGC
TGCCTGTGATGGCTTTGGAAATTGTGCACTACATATATCTTATTGGTGGT
GTCACCAACTTTTCAATGCTCACTTTTGCGGCCATGTTTGGGTTGGGATT
TATTGGGTGGTTGCTTTTCGAGTACACCCTGCATCGCTTCGTGTTCCATA
TGCGCACCACTGGATACTACGCCAATATCTTTCACTTTTTGATTCACGGT
CATCATCATATCACACCTATGGACTTTGACAGATTAGTGTTCCCTCCGGT
GCCAGCGTTGCTGGTTGGGTCGCCCATCTGGTTTCTGGCACCGCGATTGT
TTGGTGTCAATTTCGGGTATCCATGGTTGCTGGGCTTTGCCGTTGGATAC
CTTGTTTATGATATGACTCACTTCTGGATTCACCACGCTGTGCCGCGAAA
CTCTTTTCTCAAGCGACAAAAGAAAAGACATGTGTACCACCATTACTTTC
AACACTCGGTCAATTTTGGTATCTCGAATCCTCTCTTTGACTACATCTTC
AAAACTATATCTGAGACAGCAGAATAG
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protein sequence of Gcaud2126.t1

>Gcaud2126.t1 ID=Gcaud2126.t1|Name=Gcaud2126.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=359bp
MCQSETLRKRKRGNHAQTDNASSSAVGYALTSKVVSHHAAPNDAWVIYKG
NVYDITLFLESHPGGADILHDKLGTDVTDAMSGDQPGSHKHSPFAYKMLS
KYKIGQLAGANGEEVIDGNTDPVTGEQLVHWDKPILHQVGMLGDKYHRWI
HSFPTTDHTVKMFTNDTIEGLTKCPWYVPLVFWLPVMALEIVHYIYLIGG
VTNFSMLTFAAMFGLGFIGWLLFEYTLHRFVFHMRTTGYYANIFHFLIHG
HHHITPMDFDRLVFPPVPALLVGSPIWFLAPRLFGVNFGYPWLLGFAVGY
LVYDMTHFWIHHAVPRNSFLKRQKKRHVYHHYFQHSVNFGISNPLFDYIF
KTISETAE*
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mRNA from alignment at NODE_778_length_18212_cov_4.691463:10628..11704-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2126.t1 ID=Gcaud2126.t1|Name=Gcaud2126.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1077bp|location=Sequence derived from alignment at NODE_778_length_18212_cov_4.691463:10628..11704- (Gracilaria caudata M_176_S67 male)
ATGTGTCAGTCGGAAACTTTGAGGAAACGTAAGCGAGGAAACCACGCGCA
GACAGACAACGCCTCAAGCAGCGCTGTGGGTTATGCACTCACCAGCAAAG
TCGTATCGCATCATGCCGCCCCAAACGACGCATGGGTGATATACAAGGGC
AATGTGTACGACATCACTCTGTTCCTCGAGTCGCATCCAGGAGGTGCCGA
CATCCTGCACGATAAGCTTGGTACCGACGTGACCGACGCAATGAGCGGCG
ACCAACCTGGCAGCCACAAACACTCCCCATTTGCCTACAAGATGCTCTCC
AAGTACAAGATTGGACAGCTGGCCGGCGCAAATGGTGAGGAAGTGATTGA
CGGAAATACAGATCCTGTCACGGGTGAGCAACTGGTTCATTGGGACAAAC
CCATTCTGCACCAGGTTGGTATGCTCGGTGACAAGTATCATCGATGGATC
CATTCATTTCCTACCACTGACCACACCGTTAAGATGTTCACTAACGATAC
CATCGAAGGTCTGACAAAGTGTCCGTGGTACGTGCCACTCGTTTTCTGGC
TGCCTGTGATGGCTTTGGAAATTGTGCACTACATATATCTTATTGGTGGT
GTCACCAACTTTTCAATGCTCACTTTTGCGGCCATGTTTGGGTTGGGATT
TATTGGGTGGTTGCTTTTCGAGTACACCCTGCATCGCTTCGTGTTCCATA
TGCGCACCACTGGATACTACGCCAATATCTTTCACTTTTTGATTCACGGT
CATCATCATATCACACCTATGGACTTTGACAGATTAGTGTTCCCTCCGGT
GCCAGCGTTGCTGGTTGGGTCGCCCATCTGGTTTCTGGCACCGCGATTGT
TTGGTGTCAATTTCGGGTATCCATGGTTGCTGGGCTTTGCCGTTGGATAC
CTTGTTTATGATATGACTCACTTCTGGATTCACCACGCTGTGCCGCGAAA
CTCTTTTCTCAAGCGACAAAAGAAAAGACATGTGTACCACCATTACTTTC
AACACTCGGTCAATTTTGGTATCTCGAATCCTCTCTTTGACTACATCTTC
AAAACTATATCTGAGACAGCAGAATAG
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Coding sequence (CDS) from alignment at NODE_778_length_18212_cov_4.691463:10628..11704-

>Gcaud2126.t1 ID=Gcaud2126.t1|Name=Gcaud2126.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1077bp|location=Sequence derived from alignment at NODE_778_length_18212_cov_4.691463:10628..11704- (Gracilaria caudata M_176_S67 male)
ATGTGTCAGTCGGAAACTTTGAGGAAACGTAAGCGAGGAAACCACGCGCA
GACAGACAACGCCTCAAGCAGCGCTGTGGGTTATGCACTCACCAGCAAAG
TCGTATCGCATCATGCCGCCCCAAACGACGCATGGGTGATATACAAGGGC
AATGTGTACGACATCACTCTGTTCCTCGAGTCGCATCCAGGAGGTGCCGA
CATCCTGCACGATAAGCTTGGTACCGACGTGACCGACGCAATGAGCGGCG
ACCAACCTGGCAGCCACAAACACTCCCCATTTGCCTACAAGATGCTCTCC
AAGTACAAGATTGGACAGCTGGCCGGCGCAAATGGTGAGGAAGTGATTGA
CGGAAATACAGATCCTGTCACGGGTGAGCAACTGGTTCATTGGGACAAAC
CCATTCTGCACCAGGTTGGTATGCTCGGTGACAAGTATCATCGATGGATC
CATTCATTTCCTACCACTGACCACACCGTTAAGATGTTCACTAACGATAC
CATCGAAGGTCTGACAAAGTGTCCGTGGTACGTGCCACTCGTTTTCTGGC
TGCCTGTGATGGCTTTGGAAATTGTGCACTACATATATCTTATTGGTGGT
GTCACCAACTTTTCAATGCTCACTTTTGCGGCCATGTTTGGGTTGGGATT
TATTGGGTGGTTGCTTTTCGAGTACACCCTGCATCGCTTCGTGTTCCATA
TGCGCACCACTGGATACTACGCCAATATCTTTCACTTTTTGATTCACGGT
CATCATCATATCACACCTATGGACTTTGACAGATTAGTGTTCCCTCCGGT
GCCAGCGTTGCTGGTTGGGTCGCCCATCTGGTTTCTGGCACCGCGATTGT
TTGGTGTCAATTTCGGGTATCCATGGTTGCTGGGCTTTGCCGTTGGATAC
CTTGTTTATGATATGACTCACTTCTGGATTCACCACGCTGTGCCGCGAAA
CTCTTTTCTCAAGCGACAAAAGAAAAGACATGTGTACCACCATTACTTTC
AACACTCGGTCAATTTTGGTATCTCGAATCCTCTCTTTGACTACATCTTC
AAAACTATATCTGAGACAGCAGAATAG
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