Gcaud2151.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2151.t1
Unique Name	Gcaud2151.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	711

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_774_length_18304_cov_4.574150	contig	NODE_774_length_18304_cov_4.574150:10779..12911 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2151	Gcaud2151	Gracilaria caudata M_176_S67 male	gene	NODE_774_length_18304_cov_4.574150 10779..12911 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2151.t1.start1	Gcaud2151.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_774_length_18304_cov_4.574150 10779..10781 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2151.t1.CDS1	Gcaud2151.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_774_length_18304_cov_4.574150 10779..12911 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2151.t1.exon1	Gcaud2151.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_774_length_18304_cov_4.574150 10779..12911 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2151.t1.stop1	Gcaud2151.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_774_length_18304_cov_4.574150 12909..12911 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2151.t1	Gcaud2151.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_774_length_18304_cov_4.574150 10779..12911 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_774_length_18304_cov_4.574150:10779..12911+
coding sequence from alignment at NODE_774_length_18304_cov_4.574150:10779..12911+

mRNA sequence

>Gcaud2151.t1 ID=Gcaud2151.t1|Name=Gcaud2151.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=711bp
MNVSVESGIALWNISLYGGFSYKFKTTVPKLADGQSLGSLFSGDDSLVVI
LNNSCTPKTVRTDTSETCPMQYLKRHEPLDACKFYGCSSYVPGSDSGVNL
RARMQVPVGAEKLHEFEDTEKLLKSVISTLVPSYIQTVAKEVQQQVPTNS
SPPAWLESSLKGFLYKTKRKGSGRVKRVFVLRKERGLLFHYQKMNSKKPS
AAFELANCSVAVQEEVRTYDSGSKEQPKTLTVITPKRELKLASVFANGSC
EGPGLTKWKTEIIDGIAIAKAMAVAATKKADSGGSESKIELRDCSEPTNS
DFDTKIPLGYERYCGSKFITRQVNVSEKMLMKKASQIAELLAGEFPEYPC
LVVYKYVEKVHQESNTGVMFNKRNLGSIFVHLGMPRENSHVVSHCYKGEE
QIRNSFVHSEVLSAENVYGTLKSLPLAAKLRILQNFGQDGKLKLDGFDTP
YDCLELLIDAILSDAADEQACFRFGSESASSMVRHSLRPSKKRSAAESWA
ARMTCLSAICKEGAIGVVENGTKKFEAMFRLCTTLRYLIRASVPMTQRML
KVSRLGIMALAATHLLNKLEVNFARATGLEKPDEVQNVEGLSLEKCVSQM
MKNGIADGDKMIMKNGILRFLRCRYGFGVAGASSEEEVVSPIVVPFEEFE
SAKEKDKETRLPPISMKVGLFETDKERQQALSAFLSAWAPGKEDQMMSLG
MRAVGPPVLV*

spliced messenger RNA

>Gcaud2151.t1 ID=Gcaud2151.t1|Name=Gcaud2151.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2133bp|location=Sequence derived from alignment at NODE_774_length_18304_cov_4.574150:10779..12911+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATGTCTCAGTGGAAAGTGGAATCGCTCTATGGAATATTTCTTTGTA
TGGCGGGTTTTCTTACAAGTTCAAGACCACTGTTCCGAAACTTGCGGATG
GGCAGTCGCTGGGATCGTTGTTTTCCGGAGATGATTCACTGGTTGTGATC
CTCAACAACTCATGTACCCCAAAGACCGTGCGCACAGACACAAGCGAGAC
GTGCCCGATGCAATACTTGAAGAGACATGAGCCGCTGGATGCTTGCAAGT
TCTATGGCTGTTCTTCCTACGTCCCTGGGAGTGACTCGGGCGTGAATTTG
AGAGCGCGGATGCAGGTGCCTGTTGGTGCTGAAAAACTTCATGAGTTCGA
GGATACTGAAAAACTCTTGAAATCCGTCATCTCAACACTCGTTCCGTCAT
ATATTCAAACTGTTGCAAAGGAGGTCCAACAACAGGTTCCTACCAATTCT
TCACCCCCCGCGTGGCTGGAATCGTCGTTGAAGGGCTTTTTGTATAAAAC
GAAACGAAAGGGCAGTGGACGCGTGAAAAGAGTATTCGTTCTCCGAAAGG
AACGAGGTCTATTGTTTCACTATCAAAAGATGAACTCGAAAAAGCCTTCC
GCAGCTTTTGAATTAGCCAATTGCTCGGTCGCCGTGCAAGAAGAAGTTCG
AACTTACGATTCCGGGAGTAAGGAACAACCAAAAACGTTAACGGTTATAA
CCCCAAAGCGGGAGCTCAAACTAGCGTCTGTCTTTGCAAATGGTTCTTGC
GAAGGCCCTGGTTTGACAAAATGGAAGACGGAGATCATCGATGGTATCGC
TATAGCTAAAGCAATGGCGGTCGCTGCGACCAAAAAGGCAGATTCTGGTG
GTTCAGAGTCAAAGATTGAACTTCGTGACTGCTCCGAGCCAACGAATTCA
GACTTTGACACGAAAATACCGCTGGGCTATGAGCGCTATTGTGGTTCAAA
ATTCATCACGCGGCAGGTAAACGTTAGCGAGAAAATGCTGATGAAGAAGG
CTTCTCAAATAGCGGAATTGCTAGCCGGAGAGTTCCCTGAGTATCCATGC
TTAGTTGTGTACAAGTACGTGGAAAAGGTTCATCAAGAAAGCAACACTGG
AGTCATGTTTAACAAAAGGAACCTCGGGAGCATATTCGTGCATCTTGGAA
TGCCTCGTGAGAATAGCCATGTTGTAAGCCATTGTTATAAGGGAGAAGAG
CAAATTCGAAATTCATTTGTTCACTCAGAGGTATTGTCAGCAGAAAATGT
TTACGGCACTCTGAAGAGCCTACCGCTTGCAGCCAAGCTTCGCATCCTTC
AAAACTTTGGACAGGACGGTAAGTTGAAGTTGGACGGATTTGATACACCT
TACGACTGTTTAGAATTGTTGATTGATGCGATTTTGTCGGATGCCGCAGA
TGAACAGGCATGTTTTCGATTTGGAAGTGAAAGTGCTTCTTCAATGGTGC
GTCATTCGCTGAGGCCCTCGAAGAAACGGAGCGCAGCTGAATCGTGGGCA
GCACGAATGACGTGTTTGTCAGCCATATGTAAGGAGGGAGCCATTGGGGT
TGTAGAGAACGGAACAAAGAAATTTGAAGCGATGTTTCGGCTATGTACGA
CCCTGAGATATCTGATTCGTGCGAGCGTCCCGATGACGCAGCGCATGCTG
AAAGTGTCTCGGTTGGGAATAATGGCACTGGCTGCTACTCATTTGCTGAA
CAAACTGGAAGTAAACTTCGCGAGGGCGACTGGATTGGAGAAGCCGGACG
AAGTCCAAAATGTGGAAGGTCTATCATTGGAGAAGTGCGTTTCCCAGATG
ATGAAAAATGGCATTGCAGACGGAGATAAGATGATAATGAAGAACGGCAT
TTTGCGTTTTCTGCGGTGCAGGTATGGTTTTGGTGTAGCAGGTGCAAGTT
CTGAAGAAGAGGTGGTCTCGCCAATTGTAGTACCTTTCGAGGAGTTCGAA
AGCGCTAAAGAGAAGGACAAAGAGACAAGACTACCGCCGATATCGATGAA
GGTGGGATTGTTCGAGACCGACAAAGAACGTCAACAAGCATTATCGGCCT
TTCTATCTGCTTGGGCACCAGGCAAAGAAGACCAAATGATGTCCCTTGGA
ATGAGAGCTGTTGGACCACCAGTGTTGGTCTAA

protein sequence of Gcaud2151.t1

>Gcaud2151.t1 ID=Gcaud2151.t1|Name=Gcaud2151.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=711bp
MNVSVESGIALWNISLYGGFSYKFKTTVPKLADGQSLGSLFSGDDSLVVI
LNNSCTPKTVRTDTSETCPMQYLKRHEPLDACKFYGCSSYVPGSDSGVNL
RARMQVPVGAEKLHEFEDTEKLLKSVISTLVPSYIQTVAKEVQQQVPTNS
SPPAWLESSLKGFLYKTKRKGSGRVKRVFVLRKERGLLFHYQKMNSKKPS
AAFELANCSVAVQEEVRTYDSGSKEQPKTLTVITPKRELKLASVFANGSC
EGPGLTKWKTEIIDGIAIAKAMAVAATKKADSGGSESKIELRDCSEPTNS
DFDTKIPLGYERYCGSKFITRQVNVSEKMLMKKASQIAELLAGEFPEYPC
LVVYKYVEKVHQESNTGVMFNKRNLGSIFVHLGMPRENSHVVSHCYKGEE
QIRNSFVHSEVLSAENVYGTLKSLPLAAKLRILQNFGQDGKLKLDGFDTP
YDCLELLIDAILSDAADEQACFRFGSESASSMVRHSLRPSKKRSAAESWA
ARMTCLSAICKEGAIGVVENGTKKFEAMFRLCTTLRYLIRASVPMTQRML
KVSRLGIMALAATHLLNKLEVNFARATGLEKPDEVQNVEGLSLEKCVSQM
MKNGIADGDKMIMKNGILRFLRCRYGFGVAGASSEEEVVSPIVVPFEEFE
SAKEKDKETRLPPISMKVGLFETDKERQQALSAFLSAWAPGKEDQMMSLG
MRAVGPPVLV*

mRNA from alignment at NODE_774_length_18304_cov_4.574150:10779..12911+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2151.t1 ID=Gcaud2151.t1|Name=Gcaud2151.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2133bp|location=Sequence derived from alignment at NODE_774_length_18304_cov_4.574150:10779..12911+ (Gracilaria caudata M_176_S67 male)
ATGAATGTCTCAGTGGAAAGTGGAATCGCTCTATGGAATATTTCTTTGTA
TGGCGGGTTTTCTTACAAGTTCAAGACCACTGTTCCGAAACTTGCGGATG
GGCAGTCGCTGGGATCGTTGTTTTCCGGAGATGATTCACTGGTTGTGATC
CTCAACAACTCATGTACCCCAAAGACCGTGCGCACAGACACAAGCGAGAC
GTGCCCGATGCAATACTTGAAGAGACATGAGCCGCTGGATGCTTGCAAGT
TCTATGGCTGTTCTTCCTACGTCCCTGGGAGTGACTCGGGCGTGAATTTG
AGAGCGCGGATGCAGGTGCCTGTTGGTGCTGAAAAACTTCATGAGTTCGA
GGATACTGAAAAACTCTTGAAATCCGTCATCTCAACACTCGTTCCGTCAT
ATATTCAAACTGTTGCAAAGGAGGTCCAACAACAGGTTCCTACCAATTCT
TCACCCCCCGCGTGGCTGGAATCGTCGTTGAAGGGCTTTTTGTATAAAAC
GAAACGAAAGGGCAGTGGACGCGTGAAAAGAGTATTCGTTCTCCGAAAGG
AACGAGGTCTATTGTTTCACTATCAAAAGATGAACTCGAAAAAGCCTTCC
GCAGCTTTTGAATTAGCCAATTGCTCGGTCGCCGTGCAAGAAGAAGTTCG
AACTTACGATTCCGGGAGTAAGGAACAACCAAAAACGTTAACGGTTATAA
CCCCAAAGCGGGAGCTCAAACTAGCGTCTGTCTTTGCAAATGGTTCTTGC
GAAGGCCCTGGTTTGACAAAATGGAAGACGGAGATCATCGATGGTATCGC
TATAGCTAAAGCAATGGCGGTCGCTGCGACCAAAAAGGCAGATTCTGGTG
GTTCAGAGTCAAAGATTGAACTTCGTGACTGCTCCGAGCCAACGAATTCA
GACTTTGACACGAAAATACCGCTGGGCTATGAGCGCTATTGTGGTTCAAA
ATTCATCACGCGGCAGGTAAACGTTAGCGAGAAAATGCTGATGAAGAAGG
CTTCTCAAATAGCGGAATTGCTAGCCGGAGAGTTCCCTGAGTATCCATGC
TTAGTTGTGTACAAGTACGTGGAAAAGGTTCATCAAGAAAGCAACACTGG
AGTCATGTTTAACAAAAGGAACCTCGGGAGCATATTCGTGCATCTTGGAA
TGCCTCGTGAGAATAGCCATGTTGTAAGCCATTGTTATAAGGGAGAAGAG
CAAATTCGAAATTCATTTGTTCACTCAGAGGTATTGTCAGCAGAAAATGT
TTACGGCACTCTGAAGAGCCTACCGCTTGCAGCCAAGCTTCGCATCCTTC
AAAACTTTGGACAGGACGGTAAGTTGAAGTTGGACGGATTTGATACACCT
TACGACTGTTTAGAATTGTTGATTGATGCGATTTTGTCGGATGCCGCAGA
TGAACAGGCATGTTTTCGATTTGGAAGTGAAAGTGCTTCTTCAATGGTGC
GTCATTCGCTGAGGCCCTCGAAGAAACGGAGCGCAGCTGAATCGTGGGCA
GCACGAATGACGTGTTTGTCAGCCATATGTAAGGAGGGAGCCATTGGGGT
TGTAGAGAACGGAACAAAGAAATTTGAAGCGATGTTTCGGCTATGTACGA
CCCTGAGATATCTGATTCGTGCGAGCGTCCCGATGACGCAGCGCATGCTG
AAAGTGTCTCGGTTGGGAATAATGGCACTGGCTGCTACTCATTTGCTGAA
CAAACTGGAAGTAAACTTCGCGAGGGCGACTGGATTGGAGAAGCCGGACG
AAGTCCAAAATGTGGAAGGTCTATCATTGGAGAAGTGCGTTTCCCAGATG
ATGAAAAATGGCATTGCAGACGGAGATAAGATGATAATGAAGAACGGCAT
TTTGCGTTTTCTGCGGTGCAGGTATGGTTTTGGTGTAGCAGGTGCAAGTT
CTGAAGAAGAGGTGGTCTCGCCAATTGTAGTACCTTTCGAGGAGTTCGAA
AGCGCTAAAGAGAAGGACAAAGAGACAAGACTACCGCCGATATCGATGAA
GGTGGGATTGTTCGAGACCGACAAAGAACGTCAACAAGCATTATCGGCCT
TTCTATCTGCTTGGGCACCAGGCAAAGAAGACCAAATGATGTCCCTTGGA
ATGAGAGCTGTTGGACCACCAGTGTTGGTCTAA

Coding sequence (CDS) from alignment at NODE_774_length_18304_cov_4.574150:10779..12911+

>Gcaud2151.t1 ID=Gcaud2151.t1|Name=Gcaud2151.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2133bp|location=Sequence derived from alignment at NODE_774_length_18304_cov_4.574150:10779..12911+ (Gracilaria caudata M_176_S67 male)
ATGAATGTCTCAGTGGAAAGTGGAATCGCTCTATGGAATATTTCTTTGTA
TGGCGGGTTTTCTTACAAGTTCAAGACCACTGTTCCGAAACTTGCGGATG
GGCAGTCGCTGGGATCGTTGTTTTCCGGAGATGATTCACTGGTTGTGATC
CTCAACAACTCATGTACCCCAAAGACCGTGCGCACAGACACAAGCGAGAC
GTGCCCGATGCAATACTTGAAGAGACATGAGCCGCTGGATGCTTGCAAGT
TCTATGGCTGTTCTTCCTACGTCCCTGGGAGTGACTCGGGCGTGAATTTG
AGAGCGCGGATGCAGGTGCCTGTTGGTGCTGAAAAACTTCATGAGTTCGA
GGATACTGAAAAACTCTTGAAATCCGTCATCTCAACACTCGTTCCGTCAT
ATATTCAAACTGTTGCAAAGGAGGTCCAACAACAGGTTCCTACCAATTCT
TCACCCCCCGCGTGGCTGGAATCGTCGTTGAAGGGCTTTTTGTATAAAAC
GAAACGAAAGGGCAGTGGACGCGTGAAAAGAGTATTCGTTCTCCGAAAGG
AACGAGGTCTATTGTTTCACTATCAAAAGATGAACTCGAAAAAGCCTTCC
GCAGCTTTTGAATTAGCCAATTGCTCGGTCGCCGTGCAAGAAGAAGTTCG
AACTTACGATTCCGGGAGTAAGGAACAACCAAAAACGTTAACGGTTATAA
CCCCAAAGCGGGAGCTCAAACTAGCGTCTGTCTTTGCAAATGGTTCTTGC
GAAGGCCCTGGTTTGACAAAATGGAAGACGGAGATCATCGATGGTATCGC
TATAGCTAAAGCAATGGCGGTCGCTGCGACCAAAAAGGCAGATTCTGGTG
GTTCAGAGTCAAAGATTGAACTTCGTGACTGCTCCGAGCCAACGAATTCA
GACTTTGACACGAAAATACCGCTGGGCTATGAGCGCTATTGTGGTTCAAA
ATTCATCACGCGGCAGGTAAACGTTAGCGAGAAAATGCTGATGAAGAAGG
CTTCTCAAATAGCGGAATTGCTAGCCGGAGAGTTCCCTGAGTATCCATGC
TTAGTTGTGTACAAGTACGTGGAAAAGGTTCATCAAGAAAGCAACACTGG
AGTCATGTTTAACAAAAGGAACCTCGGGAGCATATTCGTGCATCTTGGAA
TGCCTCGTGAGAATAGCCATGTTGTAAGCCATTGTTATAAGGGAGAAGAG
CAAATTCGAAATTCATTTGTTCACTCAGAGGTATTGTCAGCAGAAAATGT
TTACGGCACTCTGAAGAGCCTACCGCTTGCAGCCAAGCTTCGCATCCTTC
AAAACTTTGGACAGGACGGTAAGTTGAAGTTGGACGGATTTGATACACCT
TACGACTGTTTAGAATTGTTGATTGATGCGATTTTGTCGGATGCCGCAGA
TGAACAGGCATGTTTTCGATTTGGAAGTGAAAGTGCTTCTTCAATGGTGC
GTCATTCGCTGAGGCCCTCGAAGAAACGGAGCGCAGCTGAATCGTGGGCA
GCACGAATGACGTGTTTGTCAGCCATATGTAAGGAGGGAGCCATTGGGGT
TGTAGAGAACGGAACAAAGAAATTTGAAGCGATGTTTCGGCTATGTACGA
CCCTGAGATATCTGATTCGTGCGAGCGTCCCGATGACGCAGCGCATGCTG
AAAGTGTCTCGGTTGGGAATAATGGCACTGGCTGCTACTCATTTGCTGAA
CAAACTGGAAGTAAACTTCGCGAGGGCGACTGGATTGGAGAAGCCGGACG
AAGTCCAAAATGTGGAAGGTCTATCATTGGAGAAGTGCGTTTCCCAGATG
ATGAAAAATGGCATTGCAGACGGAGATAAGATGATAATGAAGAACGGCAT
TTTGCGTTTTCTGCGGTGCAGGTATGGTTTTGGTGTAGCAGGTGCAAGTT
CTGAAGAAGAGGTGGTCTCGCCAATTGTAGTACCTTTCGAGGAGTTCGAA
AGCGCTAAAGAGAAGGACAAAGAGACAAGACTACCGCCGATATCGATGAA
GGTGGGATTGTTCGAGACCGACAAAGAACGTCAACAAGCATTATCGGCCT
TTCTATCTGCTTGGGCACCAGGCAAAGAAGACCAAATGATGTCCCTTGGA
ATGAGAGCTGTTGGACCACCAGTGTTGGTCTAA