Gcaud2152.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2152.t1
Unique NameGcaud2152.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length199
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_774_length_18304_cov_4.574150contigNODE_774_length_18304_cov_4.574150:15265..16099 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog430498.S8C1Z2
PFAMsTauD
Max annot lvl4751|Fungi
Evalue1.14e-14
EggNOG OGs2CY22@1|root,2S1E9@2759|Eukaryota,3A2F5@33154|Opisthokonta,3P3NX@4751|Fungi,3QP1I@4890|Ascomycota
Descriptiontaurine catabolism dioxygenase
COG categoryE
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2152Gcaud2152Gracilaria caudata M_176_S67 malegeneNODE_774_length_18304_cov_4.574150 15265..16099 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2152.t1Gcaud2152.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_774_length_18304_cov_4.574150 15265..16099 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2152.t1.stop1Gcaud2152.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_774_length_18304_cov_4.574150 15265..15267 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2152.t1.CDS1Gcaud2152.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_774_length_18304_cov_4.574150 15265..15361 -
Gcaud2152.t1.CDS2Gcaud2152.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_774_length_18304_cov_4.574150 15503..15916 -
Gcaud2152.t1.CDS3Gcaud2152.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_774_length_18304_cov_4.574150 16014..16099 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2152.t1.exon1Gcaud2152.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_774_length_18304_cov_4.574150 15265..15361 -
Gcaud2152.t1.exon2Gcaud2152.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_774_length_18304_cov_4.574150 15503..15916 -
Gcaud2152.t1.exon3Gcaud2152.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_774_length_18304_cov_4.574150 16014..16099 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2152.t1.intron1Gcaud2152.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_774_length_18304_cov_4.574150 15362..15502 -
Gcaud2152.t1.intron2Gcaud2152.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_774_length_18304_cov_4.574150 15917..16013 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2152.t1.start1Gcaud2152.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_774_length_18304_cov_4.574150 16097..16099 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2152.t1 ID=Gcaud2152.t1|Name=Gcaud2152.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=199bp
MECLMDPKFFGATKVIPFHSMVEASVPIRWGCFIGVEKRLGDREEFAKFL
IESLGAIYRTHSDMDGEVWVIKPIVTWTAQNARSYTTHAFEIHTDASFEK
EPPRFVAMSVIHAERRGGGLFAVSPISDALSKLKEEDAENLMSIKARWIV
PNEFRKSGEGDTFAPVLSIHIAELKLWILIDTYIEYDSIYLTLKKSES*
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spliced messenger RNA

>Gcaud2152.t1 ID=Gcaud2152.t1|Name=Gcaud2152.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=597bp|location=Sequence derived from alignment at NODE_774_length_18304_cov_4.574150:15265..16099- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAATGTCTTATGGACCCGAAGTTTTTCGGAGCAACGAAGGTGATACC
ATTTCATTCCATGGTGGAGGCCTCGGTTCCTATCCGATGGGGTTGCTTTA
TTGGGGTCGAGAAACGCCTCGGTGACAGAGAAGAATTTGCAAAATTCTTG
ATTGAGAGTCTTGGTGCCATATACAGAACCCACAGCGATATGGATGGTGA
AGTTTGGGTTATCAAACCGATTGTGACGTGGACTGCTCAGAATGCTCGAT
CATACACCACCCATGCTTTTGAAATCCACACGGACGCTTCGTTTGAGAAG
GAACCGCCGCGGTTCGTAGCAATGTCTGTAATCCATGCTGAAAGGCGTGG
AGGTGGTTTGTTTGCAGTTTCGCCCATATCTGACGCCCTGTCGAAATTGA
AAGAAGAAGACGCTGAGAATCTGATGAGCATTAAGGCAAGGTGGATCGTC
CCAAATGAGTTTCGTAAGAGTGGAGAAGGAGATACTTTCGCCCCGGTTCT
AAGTATACACATTGCCGAACTGAAGTTATGGATTTTGATCGACACCTACA
TCGAGTACGATTCGATCTACCTAACTCTCAAGAAATCTGAGAGCTAA
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protein sequence of Gcaud2152.t1

>Gcaud2152.t1 ID=Gcaud2152.t1|Name=Gcaud2152.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=199bp
MECLMDPKFFGATKVIPFHSMVEASVPIRWGCFIGVEKRLGDREEFAKFL
IESLGAIYRTHSDMDGEVWVIKPIVTWTAQNARSYTTHAFEIHTDASFEK
EPPRFVAMSVIHAERRGGGLFAVSPISDALSKLKEEDAENLMSIKARWIV
PNEFRKSGEGDTFAPVLSIHIAELKLWILIDTYIEYDSIYLTLKKSES*
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mRNA from alignment at NODE_774_length_18304_cov_4.574150:15265..16099-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2152.t1 ID=Gcaud2152.t1|Name=Gcaud2152.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=835bp|location=Sequence derived from alignment at NODE_774_length_18304_cov_4.574150:15265..16099- (Gracilaria caudata M_176_S67 male)
ATGGAATGTCTTATGGACCCGAAGTTTTTCGGAGCAACGAAGGTGATACC
ATTTCATTCCATGGTGGAGGCCTCGGTTCCTATCCGGTAATGGAAATCTA
TGGAATTCCTTCACGAGCACGTTCAATGTGTTACGTTTTGCAGTTTGCCA
ATTCTTCCGCAATCCTCAAATAGCTTGCTACAGATGGGGTTGCTTTATTG
GGGTCGAGAAACGCCTCGGTGACAGAGAAGAATTTGCAAAATTCTTGATT
GAGAGTCTTGGTGCCATATACAGAACCCACAGCGATATGGATGGTGAAGT
TTGGGTTATCAAACCGATTGTGACGTGGACTGCTCAGAATGCTCGATCAT
ACACCACCCATGCTTTTGAAATCCACACGGACGCTTCGTTTGAGAAGGAA
CCGCCGCGGTTCGTAGCAATGTCTGTAATCCATGCTGAAAGGCGTGGAGG
TGGTTTGTTTGCAGTTTCGCCCATATCTGACGCCCTGTCGAAATTGAAAG
AAGAAGACGCTGAGAATCTGATGAGCATTAAGGCAAGGTGGATCGTCCCA
AATGAGTTTCGTAAGAGTGGAGAAGGAGATACTTTCGCCCCGGTTCTGTT
CTCTCATGAGATGATCTACCTCCGGAGGAGGCGGCTAAATTCAACAAGTC
ATTTAAATCATTTCTTGAAGCAGTTACAAAGTGAATCAGTGATGAGTACT
TAGTTCCCGAGCAAACTGTGATTATACTTGATAATCAGAAGTATACACAT
TGCCGAACTGAAGTTATGGATTTTGATCGACACCTACATCGAGTACGATT
CGATCTACCTAACTCTCAAGAAATCTGAGAGCTAA
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Coding sequence (CDS) from alignment at NODE_774_length_18304_cov_4.574150:15265..16099-

>Gcaud2152.t1 ID=Gcaud2152.t1|Name=Gcaud2152.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=597bp|location=Sequence derived from alignment at NODE_774_length_18304_cov_4.574150:15265..16099- (Gracilaria caudata M_176_S67 male)
ATGGAATGTCTTATGGACCCGAAGTTTTTCGGAGCAACGAAGGTGATACC
ATTTCATTCCATGGTGGAGGCCTCGGTTCCTATCCGATGGGGTTGCTTTA
TTGGGGTCGAGAAACGCCTCGGTGACAGAGAAGAATTTGCAAAATTCTTG
ATTGAGAGTCTTGGTGCCATATACAGAACCCACAGCGATATGGATGGTGA
AGTTTGGGTTATCAAACCGATTGTGACGTGGACTGCTCAGAATGCTCGAT
CATACACCACCCATGCTTTTGAAATCCACACGGACGCTTCGTTTGAGAAG
GAACCGCCGCGGTTCGTAGCAATGTCTGTAATCCATGCTGAAAGGCGTGG
AGGTGGTTTGTTTGCAGTTTCGCCCATATCTGACGCCCTGTCGAAATTGA
AAGAAGAAGACGCTGAGAATCTGATGAGCATTAAGGCAAGGTGGATCGTC
CCAAATGAGTTTCGTAAGAGTGGAGAAGGAGATACTTTCGCCCCGGTTCT
AAGTATACACATTGCCGAACTGAAGTTATGGATTTTGATCGACACCTACA
TCGAGTACGATTCGATCTACCTAACTCTCAAGAAATCTGAGAGCTAA
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