Gcaud3691.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3691.t1
Unique NameGcaud3691.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length161
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_765_length_18448_cov_4.348151contigNODE_765_length_18448_cov_4.348151:10038..10520 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog313628.LNTAR_01517
Preferred namehsp18
PFAMsHSP20
Max annot lvl2|Bacteria
KEGG koko:K13993
KEGG Pathwayko04141,map04141
Evalue7.37e-08
EggNOG OGsCOG0071@1|root,COG0071@2|Bacteria
DescriptionBelongs to the small heat shock protein (HSP20) family
COG categoryO
BRITEko00000,ko00001,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3691Gcaud3691Gracilaria caudata M_176_S67 malegeneNODE_765_length_18448_cov_4.348151 10038..10520 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3691.t1.stop1Gcaud3691.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_765_length_18448_cov_4.348151 10038..10040 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3691.t1.CDS1Gcaud3691.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_765_length_18448_cov_4.348151 10038..10520 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3691.t1.exon1Gcaud3691.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_765_length_18448_cov_4.348151 10038..10520 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3691.t1.start1Gcaud3691.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_765_length_18448_cov_4.348151 10518..10520 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3691.t1Gcaud3691.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_765_length_18448_cov_4.348151 10038..10520 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3691.t1 ID=Gcaud3691.t1|Name=Gcaud3691.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=161bp
MFPNIAHTIAAPLPFLLGQSHTNSSAHAHFHPFRFGHNRRHPVEGANTRV
SSVVEPTYYVESDDVQGFLYVELPGVRKRDIVIELHGHHLSISAKRFAPT
LMSAAEEKEPKLLVQYDLQLGLSHDTDVSKVKVEEYANGVLAVNIPVARK
KNGRKIKIDV*
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spliced messenger RNA

>Gcaud3691.t1 ID=Gcaud3691.t1|Name=Gcaud3691.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=483bp|location=Sequence derived from alignment at NODE_765_length_18448_cov_4.348151:10038..10520- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTCCCAACATCGCGCACACCATCGCGGCGCCGTTGCCGTTCCTGCT
CGGCCAGTCGCACACTAATTCGTCCGCACACGCGCACTTTCATCCGTTTC
GTTTCGGACATAACCGTCGACACCCGGTAGAAGGCGCGAACACTCGAGTT
TCTTCGGTGGTGGAGCCCACGTACTACGTGGAATCGGATGATGTGCAGGG
CTTTCTGTACGTCGAGCTTCCTGGCGTGAGGAAGAGAGATATTGTTATCG
AGCTGCATGGACATCACTTGAGCATTTCTGCGAAGCGGTTTGCGCCTACC
TTGATGAGTGCGGCGGAGGAGAAGGAACCCAAGTTGCTGGTTCAGTATGA
TTTGCAATTGGGTCTGAGTCATGACACAGACGTCTCAAAGGTCAAGGTTG
AGGAGTACGCAAACGGTGTGCTTGCGGTGAACATTCCGGTTGCGCGGAAG
AAGAATGGCAGGAAGATTAAGATCGACGTGTGA
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protein sequence of Gcaud3691.t1

>Gcaud3691.t1 ID=Gcaud3691.t1|Name=Gcaud3691.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=161bp
MFPNIAHTIAAPLPFLLGQSHTNSSAHAHFHPFRFGHNRRHPVEGANTRV
SSVVEPTYYVESDDVQGFLYVELPGVRKRDIVIELHGHHLSISAKRFAPT
LMSAAEEKEPKLLVQYDLQLGLSHDTDVSKVKVEEYANGVLAVNIPVARK
KNGRKIKIDV*
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mRNA from alignment at NODE_765_length_18448_cov_4.348151:10038..10520-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3691.t1 ID=Gcaud3691.t1|Name=Gcaud3691.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=483bp|location=Sequence derived from alignment at NODE_765_length_18448_cov_4.348151:10038..10520- (Gracilaria caudata M_176_S67 male)
ATGTTTCCCAACATCGCGCACACCATCGCGGCGCCGTTGCCGTTCCTGCT
CGGCCAGTCGCACACTAATTCGTCCGCACACGCGCACTTTCATCCGTTTC
GTTTCGGACATAACCGTCGACACCCGGTAGAAGGCGCGAACACTCGAGTT
TCTTCGGTGGTGGAGCCCACGTACTACGTGGAATCGGATGATGTGCAGGG
CTTTCTGTACGTCGAGCTTCCTGGCGTGAGGAAGAGAGATATTGTTATCG
AGCTGCATGGACATCACTTGAGCATTTCTGCGAAGCGGTTTGCGCCTACC
TTGATGAGTGCGGCGGAGGAGAAGGAACCCAAGTTGCTGGTTCAGTATGA
TTTGCAATTGGGTCTGAGTCATGACACAGACGTCTCAAAGGTCAAGGTTG
AGGAGTACGCAAACGGTGTGCTTGCGGTGAACATTCCGGTTGCGCGGAAG
AAGAATGGCAGGAAGATTAAGATCGACGTGTGA
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Coding sequence (CDS) from alignment at NODE_765_length_18448_cov_4.348151:10038..10520-

>Gcaud3691.t1 ID=Gcaud3691.t1|Name=Gcaud3691.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=483bp|location=Sequence derived from alignment at NODE_765_length_18448_cov_4.348151:10038..10520- (Gracilaria caudata M_176_S67 male)
ATGTTTCCCAACATCGCGCACACCATCGCGGCGCCGTTGCCGTTCCTGCT
CGGCCAGTCGCACACTAATTCGTCCGCACACGCGCACTTTCATCCGTTTC
GTTTCGGACATAACCGTCGACACCCGGTAGAAGGCGCGAACACTCGAGTT
TCTTCGGTGGTGGAGCCCACGTACTACGTGGAATCGGATGATGTGCAGGG
CTTTCTGTACGTCGAGCTTCCTGGCGTGAGGAAGAGAGATATTGTTATCG
AGCTGCATGGACATCACTTGAGCATTTCTGCGAAGCGGTTTGCGCCTACC
TTGATGAGTGCGGCGGAGGAGAAGGAACCCAAGTTGCTGGTTCAGTATGA
TTTGCAATTGGGTCTGAGTCATGACACAGACGTCTCAAAGGTCAAGGTTG
AGGAGTACGCAAACGGTGTGCTTGCGGTGAACATTCCGGTTGCGCGGAAG
AAGAATGGCAGGAAGATTAAGATCGACGTGTGA
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