Gcaud1445.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1445.t1
Unique NameGcaud1445.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length377
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1021_length_14946_cov_4.146752contigNODE_1021_length_14946_cov_4.146752:4320..5530 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog580340.Tlie_0746
Preferred nameprfA
PFAMsPCRF,RF-1
Max annot lvl508458|Synergistetes
KEGG koko:K02835
Evalue8.52e-73
EggNOG OGsCOG0216@1|root,COG0216@2|Bacteria,3TA5F@508458|Synergistetes
DescriptionPeptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
COG categoryJ
BRITEko00000,ko03012
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1445Gcaud1445Gracilaria caudata M_176_S67 malegeneNODE_1021_length_14946_cov_4.146752 4320..5735 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1445.t1Gcaud1445.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1021_length_14946_cov_4.146752 4320..5530 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1445.t1.stop1Gcaud1445.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1021_length_14946_cov_4.146752 4320..4322 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1445.t1.CDS1Gcaud1445.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1021_length_14946_cov_4.146752 4320..5423 -
Gcaud1445.t1.CDS2Gcaud1445.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_1021_length_14946_cov_4.146752 5504..5530 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1445.t1.exon1Gcaud1445.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1021_length_14946_cov_4.146752 4320..5423 -
Gcaud1445.t1.exon2Gcaud1445.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_1021_length_14946_cov_4.146752 5504..5530 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1445.t1.intron1Gcaud1445.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_1021_length_14946_cov_4.146752 5424..5503 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1445.t1.start1Gcaud1445.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1021_length_14946_cov_4.146752 5528..5530 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1445.t1 ID=Gcaud1445.t1|Name=Gcaud1445.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=377bp
MNASPGREALQIQVRDAFQILKESDHGSDSEMRQLALEEIQMLQAERRQF
ATQIISHLLQQACNEDAEPARSHSAPQSATSSAIVEIRAGAGGDEAALFV
SDLFEMYEKFAARKRWKSRILSQSITSLGGLRELILRISGPLVYETVRLE
AGVHRVQRVPATETSGRVHTSTASVAVLHDDAKLAKRFVLQESDVKFDVY
RASGAGGQHVNKTESAVRATHIPTGLIATSQEDRSQHRNKAIALEALAAR
LAAKLAAEEAAKKVGERRAQLGSTIGERSDRIRTYNYQQRRVTDHRIVPS
SGLLDIIPSAKDIVGDKSVGLDNVLEGGIELERLIGGVSRARELETLYSL
IEEAKKVRNTMSEELGDRFAIKPDVV*
back to top

spliced messenger RNA

>Gcaud1445.t1 ID=Gcaud1445.t1|Name=Gcaud1445.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1131bp|location=Sequence derived from alignment at NODE_1021_length_14946_cov_4.146752:4320..5530- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACGCATCGCCAGGCAGAGAAGCGCTTCAAATTCAAGTTCGAGACGC
CTTTCAAATTTTGAAAGAGAGCGATCATGGTTCTGATTCAGAGATGCGAC
AGCTTGCCCTCGAGGAGATTCAGATGTTACAAGCAGAGAGACGTCAGTTT
GCAACACAAATAATATCACATCTGCTCCAACAAGCGTGCAATGAGGATGC
GGAACCAGCTCGATCGCATTCCGCTCCTCAATCTGCAACGAGTAGCGCTA
TAGTGGAAATAAGGGCGGGCGCAGGCGGGGATGAAGCCGCCCTGTTCGTT
TCAGATCTGTTCGAAATGTATGAAAAGTTTGCGGCACGCAAGAGATGGAA
GTCAAGAATTCTGTCCCAATCAATCACATCCCTAGGGGGATTGCGTGAGT
TGATTCTGCGAATTTCCGGGCCTCTTGTGTACGAAACCGTGCGCCTCGAG
GCCGGGGTACATCGGGTGCAAAGGGTGCCGGCCACAGAGACTAGTGGTAG
GGTTCATACGAGCACGGCGAGTGTGGCTGTGTTACATGATGATGCCAAAT
TGGCCAAACGATTTGTCTTGCAAGAAAGTGACGTCAAGTTTGACGTTTAC
CGAGCAAGTGGAGCTGGGGGCCAACATGTGAACAAGACAGAGTCTGCAGT
GCGTGCAACACATATTCCAACAGGATTGATAGCAACCAGCCAAGAGGACC
GTTCTCAACATCGGAACAAAGCGATTGCGTTGGAAGCTTTGGCGGCTCGG
CTGGCGGCAAAGCTGGCCGCAGAAGAGGCTGCGAAAAAGGTTGGCGAGCG
TAGGGCGCAACTGGGGAGTACGATTGGCGAACGAAGTGATAGGATACGAA
CATACAACTATCAGCAGCGTAGAGTAACGGACCATCGTATTGTGCCCTCA
TCGGGGTTGCTGGATATTATACCGTCAGCAAAAGATATAGTCGGAGACAA
GAGTGTGGGTCTAGACAATGTTCTGGAGGGCGGCATAGAACTGGAGCGCT
TAATTGGGGGCGTCTCTAGAGCGCGAGAGCTTGAGACTTTGTACTCGCTA
ATTGAAGAAGCAAAGAAGGTGAGAAATACCATGTCAGAGGAGTTAGGTGA
CAGATTTGCAATCAAACCGGATGTGGTTTGA
back to top

protein sequence of Gcaud1445.t1

>Gcaud1445.t1 ID=Gcaud1445.t1|Name=Gcaud1445.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=377bp
MNASPGREALQIQVRDAFQILKESDHGSDSEMRQLALEEIQMLQAERRQF
ATQIISHLLQQACNEDAEPARSHSAPQSATSSAIVEIRAGAGGDEAALFV
SDLFEMYEKFAARKRWKSRILSQSITSLGGLRELILRISGPLVYETVRLE
AGVHRVQRVPATETSGRVHTSTASVAVLHDDAKLAKRFVLQESDVKFDVY
RASGAGGQHVNKTESAVRATHIPTGLIATSQEDRSQHRNKAIALEALAAR
LAAKLAAEEAAKKVGERRAQLGSTIGERSDRIRTYNYQQRRVTDHRIVPS
SGLLDIIPSAKDIVGDKSVGLDNVLEGGIELERLIGGVSRARELETLYSL
IEEAKKVRNTMSEELGDRFAIKPDVV*
back to top

mRNA from alignment at NODE_1021_length_14946_cov_4.146752:4320..5530-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1445.t1 ID=Gcaud1445.t1|Name=Gcaud1445.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1211bp|location=Sequence derived from alignment at NODE_1021_length_14946_cov_4.146752:4320..5530- (Gracilaria caudata M_176_S67 male)
ATGAACGCATCGCCAGGCAGAGAAGCGGTAAGTCTTTCGATGCAACACAT
CAATCCCATCTACAAGCGCTCACTCCAGTCGCATCATTGACAGAGTCCTT
GGATAAGCTTCAAATTCAAGTTCGAGACGCCTTTCAAATTTTGAAAGAGA
GCGATCATGGTTCTGATTCAGAGATGCGACAGCTTGCCCTCGAGGAGATT
CAGATGTTACAAGCAGAGAGACGTCAGTTTGCAACACAAATAATATCACA
TCTGCTCCAACAAGCGTGCAATGAGGATGCGGAACCAGCTCGATCGCATT
CCGCTCCTCAATCTGCAACGAGTAGCGCTATAGTGGAAATAAGGGCGGGC
GCAGGCGGGGATGAAGCCGCCCTGTTCGTTTCAGATCTGTTCGAAATGTA
TGAAAAGTTTGCGGCACGCAAGAGATGGAAGTCAAGAATTCTGTCCCAAT
CAATCACATCCCTAGGGGGATTGCGTGAGTTGATTCTGCGAATTTCCGGG
CCTCTTGTGTACGAAACCGTGCGCCTCGAGGCCGGGGTACATCGGGTGCA
AAGGGTGCCGGCCACAGAGACTAGTGGTAGGGTTCATACGAGCACGGCGA
GTGTGGCTGTGTTACATGATGATGCCAAATTGGCCAAACGATTTGTCTTG
CAAGAAAGTGACGTCAAGTTTGACGTTTACCGAGCAAGTGGAGCTGGGGG
CCAACATGTGAACAAGACAGAGTCTGCAGTGCGTGCAACACATATTCCAA
CAGGATTGATAGCAACCAGCCAAGAGGACCGTTCTCAACATCGGAACAAA
GCGATTGCGTTGGAAGCTTTGGCGGCTCGGCTGGCGGCAAAGCTGGCCGC
AGAAGAGGCTGCGAAAAAGGTTGGCGAGCGTAGGGCGCAACTGGGGAGTA
CGATTGGCGAACGAAGTGATAGGATACGAACATACAACTATCAGCAGCGT
AGAGTAACGGACCATCGTATTGTGCCCTCATCGGGGTTGCTGGATATTAT
ACCGTCAGCAAAAGATATAGTCGGAGACAAGAGTGTGGGTCTAGACAATG
TTCTGGAGGGCGGCATAGAACTGGAGCGCTTAATTGGGGGCGTCTCTAGA
GCGCGAGAGCTTGAGACTTTGTACTCGCTAATTGAAGAAGCAAAGAAGGT
GAGAAATACCATGTCAGAGGAGTTAGGTGACAGATTTGCAATCAAACCGG
ATGTGGTTTGA
back to top

Coding sequence (CDS) from alignment at NODE_1021_length_14946_cov_4.146752:4320..5530-

>Gcaud1445.t1 ID=Gcaud1445.t1|Name=Gcaud1445.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1131bp|location=Sequence derived from alignment at NODE_1021_length_14946_cov_4.146752:4320..5530- (Gracilaria caudata M_176_S67 male)
ATGAACGCATCGCCAGGCAGAGAAGCGCTTCAAATTCAAGTTCGAGACGC
CTTTCAAATTTTGAAAGAGAGCGATCATGGTTCTGATTCAGAGATGCGAC
AGCTTGCCCTCGAGGAGATTCAGATGTTACAAGCAGAGAGACGTCAGTTT
GCAACACAAATAATATCACATCTGCTCCAACAAGCGTGCAATGAGGATGC
GGAACCAGCTCGATCGCATTCCGCTCCTCAATCTGCAACGAGTAGCGCTA
TAGTGGAAATAAGGGCGGGCGCAGGCGGGGATGAAGCCGCCCTGTTCGTT
TCAGATCTGTTCGAAATGTATGAAAAGTTTGCGGCACGCAAGAGATGGAA
GTCAAGAATTCTGTCCCAATCAATCACATCCCTAGGGGGATTGCGTGAGT
TGATTCTGCGAATTTCCGGGCCTCTTGTGTACGAAACCGTGCGCCTCGAG
GCCGGGGTACATCGGGTGCAAAGGGTGCCGGCCACAGAGACTAGTGGTAG
GGTTCATACGAGCACGGCGAGTGTGGCTGTGTTACATGATGATGCCAAAT
TGGCCAAACGATTTGTCTTGCAAGAAAGTGACGTCAAGTTTGACGTTTAC
CGAGCAAGTGGAGCTGGGGGCCAACATGTGAACAAGACAGAGTCTGCAGT
GCGTGCAACACATATTCCAACAGGATTGATAGCAACCAGCCAAGAGGACC
GTTCTCAACATCGGAACAAAGCGATTGCGTTGGAAGCTTTGGCGGCTCGG
CTGGCGGCAAAGCTGGCCGCAGAAGAGGCTGCGAAAAAGGTTGGCGAGCG
TAGGGCGCAACTGGGGAGTACGATTGGCGAACGAAGTGATAGGATACGAA
CATACAACTATCAGCAGCGTAGAGTAACGGACCATCGTATTGTGCCCTCA
TCGGGGTTGCTGGATATTATACCGTCAGCAAAAGATATAGTCGGAGACAA
GAGTGTGGGTCTAGACAATGTTCTGGAGGGCGGCATAGAACTGGAGCGCT
TAATTGGGGGCGTCTCTAGAGCGCGAGAGCTTGAGACTTTGTACTCGCTA
ATTGAAGAAGCAAAGAAGGTGAGAAATACCATGTCAGAGGAGTTAGGTGA
CAGATTTGCAATCAAACCGGATGTGGTTTGA
back to top