Gcaud9589.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud9589.t1
Unique NameGcaud9589.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length274
Homology
BLAST of Gcaud9589.t1 vs. uniprot
Match: A0A2V3IGA5_9FLOR (DUF2407_C domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IGA5_9FLOR)

HSP 1 Score: 378 bits (971), Expect = 4.780e-130
Identity = 199/274 (72.63%), Postives = 231/274 (84.31%), Query Frame = 0
Query:    1 MPDNEEAEKPAVQHVRVGLPGGTVHDFELPLDATLSDVANRIVEAERLDEHAVRIRLISAGKLFTDFSLPVRDIVGEGDFLHCAVSQRPSEADDSQERSENEGEAQVPDGNIVFEAIDTHRGVSVIIPERSDIASDRLIAAGFSAEETRLILRHFQILQRH-ARRGRQSVGDIEEGGQRAEVDVDDNGDLIARVRRPRTEPRSMLTSGVEGTNGDFLMGCIFGYLLGIIVLVLLLDNSATRRWRVGLIAGVATNCAFGVLRTSLRLNSSSFSAT 273
            M +N++ EKP +QHVRVGLPGGTVHDFELP DATLSDVAN+I++AE L+E+ VRIRLI AGKLFTDFSL VRDIVG+GDFLHCAVSQR     + Q+++E+    + P+GN+VFEAID HRGVSV+IPE S  ASDRLI AGF+ +ETRLILRHFQILQ H A +  +  GDIEEGGQ AE D +DN + I R+RRP  EPRSML+SGVEG+N DFLMGCIFGYLLGIIVLVLLLD++ATRRWRVGLIAGVATNCAFG+LRT+L LNSS FSAT
Sbjct:    1 MSENDQ-EKPGLQHVRVGLPGGTVHDFELPSDATLSDVANQIIKAENLNENNVRIRLICAGKLFTDFSLLVRDIVGDGDFLHCAVSQRQDNPTEPQQQTESNRGDEYPEGNLVFEAIDVHRGVSVVIPEHSPAASDRLIDAGFTPDETRLILRHFQILQSHEAVQRERPTGDIEEGGQGAESDAEDNSEFITRIRRPHPEPRSMLSSGVEGSNADFLMGCIFGYLLGIIVLVLLLDSNATRRWRVGLIAGVATNCAFGLLRTTLDLNSS-FSAT 272          
BLAST of Gcaud9589.t1 vs. uniprot
Match: M2Y3J2_GALSU (Ubiquitin-like domain-containing protein n=2 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2Y3J2_GALSU)

HSP 1 Score: 98.6 bits (244), Expect = 7.820e-21
Identity = 74/264 (28.03%), Postives = 124/264 (46.97%), Query Frame = 0
Query:   15 VRVGLPGGTVHDFELPLDATLSDVANRIVEAERLDEHA----------VRIRLISAGKLFTDFSLPVRDI-VGEGDFLHCAVSQRPS-----EADDSQERSENEGEAQVPDGNIVFEAIDTHRGVSVIIPERSDIASDRLIAAGFSAEETRLILRHFQILQRHARRGRQSVGDIEEGGQRAEVDVDDNGDLIARVRRPRTEPRSMLTSGVEGTNGDFLMGCIFGYLLGIIVLVLLLDNSATRRWRVGLIAGVATNCAFGVLRTS 262
            +R+GLP G+V   ++  DAT+  + +++ +  ++D              RIRLI +GKL ++ S  + D  + +G ++HC +S   +        ++QERSE                      + V+ P       DRL  AGF+ +E  ++ R F   Q       +  GD+ +  +R   D   +   +  +        S+     EGT  DF+ G + G+LLGIIVLV LLD    R+ ++G++AGV  N  FG+LR++
Sbjct:    3 LRIGLPDGSVSTIQVDQDATIDQLKDKVCQERKIDPKTKRFVLIVVVGCRIRLIYSGKLLSEGSSRLVDSKIEDGSYVHCVISDEVNVTSAGRTSNNQERSER-----------------LQTRIPVVDPHSEYRGLDRLREAGFTEDEIAVLRRQFARSQGLNPDHLEETGDLRDLEERWMADASTHEITVGDLEGGAFTDESVFGES-EGTVHDFVFGLLVGFLLGIIVLVFLLDRGLPRKRKLGILAGVVGNLLFGILRST 248          
BLAST of Gcaud9589.t1 vs. uniprot
Match: M4C6L0_HYAAE (Ubiquitin-like domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C6L0_HYAAE)

HSP 1 Score: 61.2 bits (147), Expect = 2.740e-7
Identity = 62/245 (25.31%), Postives = 110/245 (44.90%), Query Frame = 0
Query:   28 ELPLDATLSDVANRIVEAERLDEHAVRIRLISAGKLFTDFSLPVRDI-VGEGDFLHCAVSQRPS------------EADDSQERSENEGEAQVPDGNIVFEAIDTHRGVSVIIPERSDIASDRLIAAGFSAEETRLILRHFQILQRHARRGRQSVGDIEEGGQRAEVDVDDNGDLIARVRRPRTEPRSMLTSGVEGTNGDFLMGCIFGYLLGIIVLVLLLDNSATRRWRVGLIAGVATNCAFGVL 259
            E+ L AT++D+   + E    ++  +R  LI  GK+ +D ++ +    +   DF+HCA+S  PS            +A+D ++ S   G  ++ D  +  E I   R      P+ S   S      G  +E+ R+     + +     +   ++  +       +  +D NG              S+L +  EGT  +FL G + G LLG+ +L++LLD S  R+ +VGL+ GV+ N    V+
Sbjct:   52 EIALSATVADLKELVKEKAHAEDKFLR--LIHQGKMLSDDAVTLASSKIKNEDFVHCAMSSTPSKAAVQQMNASDSDAEDREDPSTRRGFDRLRD-RLSREEIQALR--LYFYPQLSVYISQAERVDGEGSED-RIFRLEDEWMASQGPQSEFALNVVPTARAAMDAQIDMNG-----------MNTSILAADNEGTGTEFLWGFLMGLLLGVFMLLMLLDRSVPRKQKVGLLLGVSMNFFLSVV 279          
BLAST of Gcaud9589.t1 vs. uniprot
Match: A0A484E1N4_BRELC (Ubiquitin-like domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E1N4_BRELC)

HSP 1 Score: 56.6 bits (135), Expect = 1.000e-5
Identity = 55/230 (23.91%), Postives = 90/230 (39.13%), Query Frame = 0
Query:   55 IRLISAGKLFTDFSLPVRDI-VGEGDFLHCAVSQRPSEADDSQERSENEGEAQVPDGNIVFEAIDTHRGVSVIIPERSDIASDRLIAAGFSAEETRLILRHFQILQR----------------HARRGRQSVGDIEEGGQRAEVDVDDNGDLIARVRRPRTEPR--------SMLTSGVEGTNGDFLMGCIFGYLLGIIVLVLLLDNSATRRWRVGLIAGVATNCAFGVL 259
            +RLI  GK+ +D    +    + + DF+HCA+S  P +A                        ++    V V   ER D+++ R    GF     RL     Q L+                 H       +  +EE     +    +    +    R   + +        S+L +  EGT  +FL G + G LLG+ +L++LLD S  R+ +VGL+ GV+ N    V+
Sbjct:   74 LRLIHQGKMLSDDKATLESCKIKDEDFIHCAISSAPPKA-----------------------VVNQMSAVDVEFDERDDVSTRR----GFDRLRDRLSREEIQALRLYFYPQLSIYISQAEHVHGENSEDRIYRLEEEWMAVQGPQSEFALNVVPTARIAMDTQIDMNGVSNSILAADNEGTGTEFLWGFLMGLLLGVFMLLMLLDRSVPRKQKVGLLLGVSMNFFLSVV 276          
The following BLAST results are available for this feature:
BLAST of Gcaud9589.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3IGA5_9FLOR4.780e-13072.63DUF2407_C domain-containing protein n=1 Tax=Gracil... [more]
M2Y3J2_GALSU7.820e-2128.03Ubiquitin-like domain-containing protein n=2 Tax=G... [more]
M4C6L0_HYAAE2.740e-725.31Ubiquitin-like domain-containing protein n=1 Tax=H... [more]
A0A484E1N4_BRELC1.000e-523.91Ubiquitin-like domain-containing protein n=1 Tax=B... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025390DSC E3 ubiquitin ligase complex subunit 3, C-terminalPFAMPF13373DUF2407_Ccoord: 136..260
e-value: 1.7E-11
score: 44.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 87..109
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 235..273
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..214
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 215..234
NoneNo IPR availableTMHMMTMhelixcoord: 212..234
IPR029071Ubiquitin-like domain superfamilySUPERFAMILY54236Ubiquitin-likecoord: 9..103

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_749_length_18675_cov_4.529918contigNODE_749_length_18675_cov_4.529918:8284..9105 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9589.t1Gcaud9589.t1Gracilaria caudata M_176_S67 malemRNANODE_749_length_18675_cov_4.529918 8284..9105 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud9589.t1 ID=Gcaud9589.t1|Name=Gcaud9589.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=274bp
MPDNEEAEKPAVQHVRVGLPGGTVHDFELPLDATLSDVANRIVEAERLDE
HAVRIRLISAGKLFTDFSLPVRDIVGEGDFLHCAVSQRPSEADDSQERSE
NEGEAQVPDGNIVFEAIDTHRGVSVIIPERSDIASDRLIAAGFSAEETRL
ILRHFQILQRHARRGRQSVGDIEEGGQRAEVDVDDNGDLIARVRRPRTEP
RSMLTSGVEGTNGDFLMGCIFGYLLGIIVLVLLLDNSATRRWRVGLIAGV
ATNCAFGVLRTSLRLNSSSFSAT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR025390Dsc3_C
IPR029071Ubiquitin-like_domsf