Gcaud9594.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud9594.t1
Unique NameGcaud9594.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length173
Homology
BLAST of Gcaud9594.t1 vs. uniprot
Match: A0A2V3IGD2_9FLOR (Ribosome-recycling factor n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IGD2_9FLOR)

HSP 1 Score: 247 bits (631), Expect = 8.110e-81
Identity = 127/165 (76.97%), Postives = 145/165 (87.88%), Query Frame = 0
Query:    1 MKKTLDALQNSYSRLRVDGATPAILDDVSVKAYGTATPLKNIAQVGVRDGRALIVQVFDESTTGAVEKAIRSAGLNLNPVRESDGKLKVPVPKSSKQTRDSMKDNALKEAEAAKVATRMIRRKAMEEVKGLRGEVGKDDINKIEKGVQKLTDRFIGDITEVQRNK 165
            MKK LD LQ +YS+LRVDGATPAILDDVSV AYGT T LKN+AQV VRDGR L++ VFDEST GAVEKAIR AGLNLNPVRE+DGKLKVPVP+SSK TRD+MK+ A KEAE+AK+ATR++RRKAMEEVK L+ EV KDDI +IEKGVQ LTDR+I DIT+VQ+NK
Sbjct:   46 MKKALDVLQTNYSKLRVDGATPAILDDVSVSAYGTETSLKNVAQVAVRDGRTLVIHVFDESTVGAVEKAIRKAGLNLNPVREADGKLKVPVPRSSKTTRDTMKETAAKEAESAKIATRLVRRKAMEEVKTLKDEVSKDDIKRIEKGVQALTDRYIKDITQVQQNK 210          
BLAST of Gcaud9594.t1 vs. uniprot
Match: R7QD66_CHOCR (RRF domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QD66_CHOCR)

HSP 1 Score: 174 bits (441), Expect = 7.290e-52
Identity = 86/160 (53.75%), Postives = 123/160 (76.88%), Query Frame = 0
Query:    1 MKKTLDALQNSYSRLRVDGATPAILDDVSVKAYGTATPLKNIAQVGVRDGRALIVQVFDESTTGAVEKAIRSAGLNLNPVRESDGKLKVPVPKSSKQTRDSMKDNALKEAEAAKVATRMIRRKAMEEVKGLRGEVGKDDINKIEKGVQKLTDRFIGDITE 160
            M+K +DAL+  Y+R+R  GA+P ILDD+ V AYG +T LK +AQV VRDGR L+V VFDE T+ AVE+AIR+AGLNLNP+ +   KLKVP+PK +++ R+     AL++AE+AKVATRM+RRKAM+ VK L+ +VGK+D+ ++E  VQ+++ ++I  I +
Sbjct:   58 MQKAVDALRARYARIRASGASPGILDDIRVDAYGASTALKKLAQVSVRDGRTLLVSVFDEGTSNAVERAIRAAGLNLNPICDGPSKLKVPIPKPTEKAREGYAKVALQDAESAKVATRMVRRKAMDAVKDLKDDVGKEDLRRMENSVQQMSSKYIAVINK 217          
BLAST of Gcaud9594.t1 vs. uniprot
Match: A0A3D4UBJ3_9GAMM (Ribosome-recycling factor n=1 Tax=Moraxellaceae bacterium TaxID=1889775 RepID=A0A3D4UBJ3_9GAMM)

HSP 1 Score: 128 bits (322), Expect = 1.840e-34
Identity = 75/174 (43.10%), Postives = 111/174 (63.79%), Query Frame = 0
Query:    1 MKKTLDALQNSYSRLRVDGATPAILDDVSVKAYGTATPLKNIAQVGVRDGRALIVQVFDESTTGAVEKAIRSAGLNLNPVRESDGKLKVPVPKSSKQTRDSMKDNALKEAEAAKVATRMIRRKAMEEVKGL--RGEVGKDDINKIEKGVQKLTDRFIGDITEVQRNKKMLLSRA 172
            MKKTL++L+  +S++R   A+PAIL DV V  YG  TPL  +A VGV D R LIVQ ++ +  GA++KAIR A L LNPV  S   ++VP+P  +++TR  M+  A  EAE A+VA R IRR  + ++K L    E+ +D+  K    VQKLTD+++G++  +  +K+  L + 
Sbjct:   13 MKKTLESLEQGFSKVRTGRASPAILKDVMVPYYGADTPLAQVANVGVEDSRTLIVQPYERTMIGAIDKAIRMADLGLNPV--SGDVIRVPLPALTEETRRDMQKVARAEAENARVALRNIRRDILADIKELLKEKEISEDEERKGNDDVQKLTDKYVGEVDRMLASKEQDLMQV 184          
BLAST of Gcaud9594.t1 vs. uniprot
Match: A0A139SU93_9GAMM (Ribosome-recycling factor n=1 Tax=Ventosimonas gracilis TaxID=1680762 RepID=A0A139SU93_9GAMM)

HSP 1 Score: 124 bits (311), Expect = 8.590e-33
Identity = 74/168 (44.05%), Postives = 104/168 (61.90%), Query Frame = 0
Query:    1 MKKTLDALQNSYSRLRVDGATPAILDDVSVKAYGTATPLKNIAQVGVRDGRALIVQVFDESTTGAVEKAIRSAGLNLNPVRESDGKLKVPVPKSSKQTRDSMKDNALKEAEAAKVATRMIRRKAMEEVKGLRG--EVGKDDINKIEKGVQKLTDRFIGDITEVQRNKK 166
            M KTL+AL+++++R+R   A+P ILD V V AYG  TPL+ +A V V D R L + VFD S  GAVEKAI ++ L LNP       ++VP+P  +++TR      A  EAE A+VA R IRR A+ +VK L    E+G+D   + E  +QKLTDRF+  + +    K+
Sbjct:   13 MGKTLEALEHAFARIRTGRASPGILDGVMVPAYGAETPLRQVANVIVEDSRTLALNVFDRSLIGAVEKAILTSDLGLNPATAGTT-IRVPMPALTEETRKGYSKQARSEAEHARVALRNIRRDALAQVKELAKAKEIGEDQERRAEAEMQKLTDRFVESVEKALAGKE 179          
BLAST of Gcaud9594.t1 vs. uniprot
Match: A0A2P6AVJ2_9GAMM (Ribosome-recycling factor n=3 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A2P6AVJ2_9GAMM)

HSP 1 Score: 124 bits (310), Expect = 1.180e-32
Identity = 73/174 (41.95%), Postives = 107/174 (61.49%), Query Frame = 0
Query:    1 MKKTLDALQNSYSRLRVDGATPAILDDVSVKAYGTATPLKNIAQVGVRDGRALIVQVFDESTTGAVEKAIRSAGLNLNPVRESDGKLKVPVPKSSKQTRDSMKDNALKEAEAAKVATRMIRRKAMEEVKGL--RGEVGKDDINKIEKGVQKLTDRFIGDITEVQRNKKMLLSRA 172
            M KT+DAL+ ++SR+R   A P++L DV V  YGT TPL  +A V V D R LIVQ ++ S  GA++KAIR++ L LNPV      ++VP+P  ++QTR  M+  A  E E A+VA R IRR  + ++K L    E+ +DD  +    VQK+TDRF+ +  ++   K+  L + 
Sbjct:   13 MTKTIDALEQAFSRVRTGRAHPSMLKDVMVPYYGTDTPLMQVANVNVDDSRTLIVQPYERSMVGAIDKAIRNSDLGLNPVTADV--IRVPLPALTEQTRRDMQKLARNETEGARVALRNIRRDVLGDIKELLKEKEISEDDERRASDDVQKITDRFVAEADKMLAAKEAELMQV 184          
BLAST of Gcaud9594.t1 vs. uniprot
Match: A0A7S3ECP5_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3ECP5_9RHOD)

HSP 1 Score: 125 bits (313), Expect = 5.450e-32
Identity = 72/152 (47.37%), Postives = 97/152 (63.82%), Query Frame = 0
Query:    1 MKKTLDALQNSYSRLRVDGATPAILDDVSVKAYGTATPLKNIAQVGVRDGRALIVQVFDESTTGAVEKAIRSAGLNLNPVRESDGKLKVPVPKSSKQTRDSMKDNALKEAEAAKVATRMIRRKAMEEVKGLRGEVGKDDINKIEKGVQKLTD 152
            M+  L AL+ S+  LR  GATP++LD V V AY +  PLK +AQV VRD R L V+ FD +    V+ AI  A L LNPV +  GKL + VPK +++TR+ +K  A +EAE  + A R +RRKAME++K     + K DI  IEK +Q+LTD
Sbjct:  115 MESALKALERSFGGLRASGATPSVLDTVHVSAYESRLPLKQVAQVIVRDARMLEVRCFDPTIEKEVKTAIEVANLGLNPVADGKGKLTIIVPKPTRETREKLKKIATEEAEGTRNAIRSVRRKAMEKLKKESEGMPKADIKSIEKDIQELTD 266          
BLAST of Gcaud9594.t1 vs. uniprot
Match: A0A1Y3CIA8_9GAMM (Ribosome-recycling factor n=2 Tax=unclassified Acinetobacter TaxID=196816 RepID=A0A1Y3CIA8_9GAMM)

HSP 1 Score: 120 bits (300), Expect = 3.780e-31
Identity = 64/160 (40.00%), Postives = 102/160 (63.75%), Query Frame = 0
Query:    1 MKKTLDALQNSYSRLRVDGATPAILDDVSVKAYGTATPLKNIAQVGVRDGRALIVQVFDESTTGAVEKAIRSAGLNLNPVRESDGKLKVPVPKSSKQTRDSMKDNALKEAEAAKVATRMIRRKAMEEVKGLRG--EVGKDDINKIEKGVQKLTDRFIGDI 158
            M+K+LD+++  ++++R   A P+IL+ V V  YG+  PL  +A VG+ D R L+VQ F+ + T  ++KAIR AGL LNP+      ++VP+P  +++TR  M+  A  EAE AKVA R IRR  + +VK L    E+ +DD  +    +QK+TD+++ +I
Sbjct:   13 MQKSLDSMEQGFAKVRTGRANPSILNGVMVPYYGSDVPLNQVANVGLEDSRTLVVQPFERTMTSTIDKAIREAGLGLNPITSDT--IRVPMPALTEETRRDMQKVARTEAENAKVAVRNIRRDVLSDVKSLLKDKEISEDDDRRAADDIQKITDKYVAEI 170          
BLAST of Gcaud9594.t1 vs. uniprot
Match: A0A7T8M3T8_9GAMM (Ribosome-recycling factor n=1 Tax=Entomomonas sp. F2A TaxID=2785331 RepID=A0A7T8M3T8_9GAMM)

HSP 1 Score: 119 bits (297), Expect = 1.100e-30
Identity = 67/168 (39.88%), Postives = 105/168 (62.50%), Query Frame = 0
Query:    1 MKKTLDALQNSYSRLRVDGATPAILDDVSVKAYGTATPLKNIAQVGVRDGRALIVQVFDESTTGAVEKAIRSAGLNLNPVRESDGKLKVPVPKSSKQTRDSMKDNALKEAEAAKVATRMIRRKAMEEVKGL--RGEVGKDDINKIEKGVQKLTDRFIGDITEVQRNKK 166
            M+KT+++L ++++++R   A P+ILD V V  YG  TPL  +A + V D R L + VFD+S T AVEKAI ++ L LNP   +   ++VP+P  +++TR      A  EAE A+VA R IRR A+ ++K L    E+ +DD  + +  +QKLTD+F+ D+ +    K+
Sbjct:   13 MQKTVESLGHAFAKIRTGRAHPSILDSVMVSYYGADTPLNQVANINVEDARTLAISVFDKSMTQAVEKAIMTSDLGLNPA-SAGTVIRVPMPPLTEETRKGYTKQARGEAENARVAIRNIRRDAITQLKDLLKEKEISEDDERRAQDEIQKLTDKFVADVDKALEQKE 179          
BLAST of Gcaud9594.t1 vs. uniprot
Match: A0A2A5AZP1_9GAMM (Ribosome-recycling factor n=1 Tax=SAR86 cluster bacterium TaxID=2030880 RepID=A0A2A5AZP1_9GAMM)

HSP 1 Score: 119 bits (297), Expect = 1.100e-30
Identity = 70/168 (41.67%), Postives = 104/168 (61.90%), Query Frame = 0
Query:    1 MKKTLDALQNSYSRLRVDGATPAILDDVSVKAYGTATPLKNIAQVGVRDGRALIVQVFDESTTGAVEKAIRSAGLNLNPVRESDGKLKVPVPKSSKQTRDSMKDNALKEAEAAKVATRMIRRKAMEEVKGLRGE--VGKDDINKIEKGVQKLTDRFIGDITEVQRNKK 166
            M+K++ +L++++ ++R   A P+ILD V V  YGT TPL  +A V V DGR+LIV  +++   G +EKAI  + L LNP    D  L+VP+P  +++TR      A KEAE A+VA R IRR A  ++KGL  E  + +D+  + E  VQKLTD++I  I    + K+
Sbjct:   13 MQKSVGSLEDAFKKIRTGRAHPSILDSVMVSYYGTDTPLSQLANVNVEDGRSLIVSPWEKPLLGDIEKAIMKSDLGLNPSNNGDT-LRVPMPPLTEETRKEYTKQAKKEAENARVAIRNIRRDANSDLKGLEKEKEISEDEQRRAEDNVQKLTDKYIAVIESTYQAKE 179          
BLAST of Gcaud9594.t1 vs. uniprot
Match: A0A0U5F635_9PROT (Ribosome-recycling factor n=9 Tax=Acetobacter TaxID=434 RepID=A0A0U5F635_9PROT)

HSP 1 Score: 118 bits (296), Expect = 1.640e-30
Identity = 63/168 (37.50%), Postives = 105/168 (62.50%), Query Frame = 0
Query:    1 MKKTLDALQNSYSRLRVDGATPAILDDVSVKAYGTATPLKNIAQVGVRDGRALIVQVFDESTTGAVEKAIRSAGLNLNPVRESDGKLKVPVPKSSKQTRDSMKDNALKEAEAAKVATRMIRRKAMEEVKGL--RGEVGKDDINKIEKGVQKLTDRFIGDITEVQRNKK 166
            M   L++L+  +S LR   A+PA+L+ V V+AYG   PL  +A + V + R + VQV+D +  GAVE+AIR AGL LNP  E    ++VP+P+ +++ R+ +   A + AE AK+A R +RR  M++ KG   +GE+ +DD+      +QK+TD+++  + ++   K+
Sbjct:   15 MDGALESLRRDFSGLRSGRASPALLEPVRVEAYGGEVPLTQVASIAVPEARMITVQVWDRALAGAVERAIRDAGLGLNPAGEGQT-IRVPIPQLTEERRNELAKAAARYAEGAKIAVRGVRRDGMDKTKGFEKKGEISQDDVKTWSDAIQKVTDQYVKKVDDMLAEKE 181          
The following BLAST results are available for this feature:
BLAST of Gcaud9594.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IGD2_9FLOR8.110e-8176.97Ribosome-recycling factor n=1 Tax=Gracilariopsis c... [more]
R7QD66_CHOCR7.290e-5253.75RRF domain-containing protein n=1 Tax=Chondrus cri... [more]
A0A3D4UBJ3_9GAMM1.840e-3443.10Ribosome-recycling factor n=1 Tax=Moraxellaceae ba... [more]
A0A139SU93_9GAMM8.590e-3344.05Ribosome-recycling factor n=1 Tax=Ventosimonas gra... [more]
A0A2P6AVJ2_9GAMM1.180e-3241.95Ribosome-recycling factor n=3 Tax=Gammaproteobacte... [more]
A0A7S3ECP5_9RHOD5.450e-3247.37Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
A0A1Y3CIA8_9GAMM3.780e-3140.00Ribosome-recycling factor n=2 Tax=unclassified Aci... [more]
A0A7T8M3T8_9GAMM1.100e-3039.88Ribosome-recycling factor n=1 Tax=Entomomonas sp. ... [more]
A0A2A5AZP1_9GAMM1.100e-3041.67Ribosome-recycling factor n=1 Tax=SAR86 cluster ba... [more]
A0A0U5F635_9PROT1.640e-3037.50Ribosome-recycling factor n=9 Tax=Acetobacter TaxI... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036191RRF superfamilyGENE3D1.10.132.20coord: 1..166
e-value: 3.3E-48
score: 165.4
IPR036191RRF superfamilySUPERFAMILY55194Ribosome recycling factor, RRFcoord: 1..166
IPR023584Ribosome recycling factor domainPFAMPF01765RRFcoord: 8..166
e-value: 1.9E-42
score: 144.9
NoneNo IPR availableGENE3D3.30.1360.40coord: 19..94
e-value: 3.3E-48
score: 165.4
IPR002661Ribosome recycling factorPANTHERPTHR20982RIBOSOME RECYCLING FACTORcoord: 1..166

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_749_length_18675_cov_4.529918contigNODE_749_length_18675_cov_4.529918:16916..17697 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9594.t1Gcaud9594.t1Gracilaria caudata M_176_S67 malemRNANODE_749_length_18675_cov_4.529918 16916..17697 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud9594.t1 ID=Gcaud9594.t1|Name=Gcaud9594.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=173bp
MKKTLDALQNSYSRLRVDGATPAILDDVSVKAYGTATPLKNIAQVGVRDG
RALIVQVFDESTTGAVEKAIRSAGLNLNPVRESDGKLKVPVPKSSKQTRD
SMKDNALKEAEAAKVATRMIRRKAMEEVKGLRGEVGKDDINKIEKGVQKL
TDRFIGDITEVQRNKKMLLSRA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036191RRF_sf
IPR023584Ribosome_recyc_fac_dom
IPR002661Ribosome_recyc_fac