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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 130081.XP_005704294.1 |
| PFAMs | DUF295,F-box,RHD3 |
| Max annot lvl | 2759|Eukaryota |
| Evalue | 1.94e-129 |
| EggNOG OGs | KOG2203@1|root,KOG2203@2759|Eukaryota |
| Description | GTP binding |
| COG category | T |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud2225.t1.start1 | Gcaud2225.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_746_length_18753_cov_4.651538 12906..12908 + |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud2225.t1.stop1 | Gcaud2225.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_746_length_18753_cov_4.651538 15754..15756 + |
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud2225.t1 ID=Gcaud2225.t1|Name=Gcaud2225.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=870bp MLLHNVQALRAQRVLREMLTLVSYLWPYKALPGAKQKERRVPWSLSSNKL HSALIASISDEPPSTEPVASHMVQVVNYEQEFNDELEKFLQAKHISELGF DYNVTAIMGPQSSGKSTLMNMLFGTKFPTMDSGGGRYQVTQGVWLGRDVD AGILVLDLEGTDSRERGEDAATYERKSALFALALAEVLVVNVWIHDVGRN NASNMPLLRTIMELDLQLFFGVTGSDSDAKRMPKTKLLFVIRDYDSTPMD KLCGSLREDLDNIWNTINKPPAAVDTPITDYFDLDFEALPHKVYCPNEFE EKVGELKRRFHGGDIFEKEYSRGVAADGFSEYARSVWETIRANKELDIPS QKEMLAHVRCEQIAKDVFFTFENATGRLKEDLLPADRSMPTIVPGLFSAL LESCDSAMGKYNEGASRYSKTVADMKAEDVRAHLSSECKMLFDAQITAAT DAAVRQFQEIVSGSEDGSISEPWLNWNENTKSAMESAMKVFDDACQTTLL CESVSDASEMKTHPLGFTISSSAMARKRLEKTLDTELRRETNRVLSESRT HCLETFHSAFKAPMTTVLESAPDDLWCRTSEVADVSWEATAKEAKTVYGE KGLALEEERMKSVEDELRSECHDSAVMDIRAAIGTPSNMLLRMMKRFEDA FRFDERGVPRHFGPNEDIEALFVAAREKGEKLAELLAEVRLEGSLAAART TASRDFGKKDNQLTIIDSNAKTDLKDKLKRQSGAIFMEAKRAQEAARITT KVPIWLIVVLLILGWNEFMAVLRNPLLLMLTIIVVPIVYVGYTLDAPTYL APAVMATLRPLVDQAKDMLDQATSAPATAGAPAAVGAADSASMPKLASSE STAVSANRTESAGAAAKAG* back to topspliced messenger RNA >Gcaud2225.t1 ID=Gcaud2225.t1|Name=Gcaud2225.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2610bp|location=Sequence derived from alignment at NODE_746_length_18753_cov_4.651538:12906..15756+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
ATGTTACTGCACAATGTGCAGGCGTTGCGAGCTCAAAGAGTCTTGAGGGA GATGTTAACGCTAGTATCCTACCTTTGGCCTTACAAGGCACTGCCTGGAG CAAAGCAGAAAGAGCGTCGTGTTCCCTGGAGCCTTAGCTCCAATAAGCTT CACTCTGCGCTCATCGCCTCTATTTCCGATGAGCCTCCTTCTACGGAGCC AGTGGCCTCGCACATGGTGCAGGTCGTCAACTATGAACAAGAGTTCAACG ATGAATTGGAGAAATTTCTCCAAGCCAAGCACATATCAGAGCTGGGATTT GATTATAATGTAACCGCCATCATGGGGCCTCAGTCGTCGGGCAAGTCCAC TTTAATGAATATGTTGTTTGGAACAAAGTTCCCGACCATGGACAGCGGCG GTGGTCGCTACCAGGTCACACAGGGTGTGTGGCTCGGACGAGACGTGGAC GCAGGCATTCTCGTCTTGGATTTGGAAGGAACAGATTCGCGCGAGAGAGG GGAGGATGCCGCCACATACGAGAGAAAAAGCGCCTTGTTTGCCTTGGCTC TAGCCGAGGTGCTCGTCGTGAATGTATGGATCCATGACGTCGGTCGAAAC AACGCGTCAAATATGCCTCTACTGCGAACCATCATGGAGCTTGACCTGCA ACTATTCTTCGGTGTTACTGGTTCGGACTCTGATGCAAAGCGAATGCCCA AGACGAAGTTATTATTTGTTATTCGGGATTACGATTCCACGCCAATGGAC AAGCTTTGCGGTTCTCTTCGTGAGGACTTGGATAACATTTGGAATACGAT TAACAAACCACCGGCTGCCGTGGATACTCCTATTACCGATTACTTTGATC TTGACTTTGAAGCACTGCCGCACAAGGTGTATTGTCCGAACGAGTTTGAA GAGAAGGTAGGAGAACTCAAGAGGCGTTTTCACGGCGGTGATATCTTCGA AAAGGAGTACAGTCGAGGCGTGGCTGCGGACGGCTTTTCAGAGTACGCAA GATCTGTGTGGGAAACCATTCGCGCCAATAAGGAGCTCGACATTCCGTCA CAGAAAGAGATGTTGGCTCACGTTCGGTGCGAACAGATAGCGAAGGATGT GTTCTTTACCTTTGAAAACGCAACAGGTCGCCTCAAAGAAGACCTTCTAC CCGCGGACCGATCAATGCCGACGATAGTACCTGGATTGTTCAGCGCGCTA CTGGAAAGTTGTGACAGCGCGATGGGCAAGTACAACGAAGGAGCTTCGCG TTACTCGAAGACTGTCGCTGATATGAAAGCAGAGGATGTTCGCGCTCACC TTTCGTCCGAATGCAAGATGCTGTTTGATGCTCAAATTACTGCTGCCACG GACGCAGCCGTAAGACAGTTTCAAGAAATTGTGAGCGGTAGCGAAGACGG ATCCATTTCTGAACCATGGCTCAATTGGAATGAAAACACCAAGAGTGCTA TGGAAAGCGCGATGAAAGTCTTTGATGATGCATGTCAGACAACACTACTA TGCGAAAGCGTTTCAGATGCATCCGAGATGAAGACACATCCTCTTGGATT CACTATCTCATCATCTGCTATGGCTAGGAAGAGACTGGAGAAGACTTTGG ACACGGAGCTCAGACGCGAGACAAACAGGGTTCTTTCGGAATCTCGGACG CATTGTCTGGAGACCTTCCACTCAGCGTTTAAAGCTCCGATGACTACTGT GTTAGAGAGCGCCCCCGACGATCTATGGTGTCGAACTTCCGAAGTCGCAG ACGTATCATGGGAAGCTACAGCCAAAGAAGCCAAGACGGTATACGGAGAG AAGGGACTTGCACTGGAGGAAGAAAGGATGAAGAGTGTCGAGGATGAGCT GAGGAGCGAATGTCATGATTCGGCTGTCATGGATATCAGGGCTGCAATTG GTACTCCGTCCAACATGCTTCTGAGAATGATGAAGCGATTCGAAGATGCC TTCCGCTTTGACGAAAGGGGGGTACCAAGACATTTCGGACCGAATGAAGA TATTGAGGCGCTGTTTGTTGCTGCACGGGAAAAGGGGGAAAAGCTTGCCG AATTGCTAGCAGAGGTCAGGTTAGAAGGCTCGCTTGCGGCTGCGAGAACC ACAGCAAGCCGTGACTTTGGCAAGAAAGACAATCAGTTGACGATCATAGA TTCGAATGCAAAGACGGATCTTAAGGACAAACTGAAGCGACAAAGCGGGG CGATCTTCATGGAGGCGAAGCGTGCACAGGAAGCAGCGAGAATTACAACC AAGGTTCCTATCTGGCTTATCGTGGTGCTGCTGATTCTCGGCTGGAATGA ATTCATGGCTGTCTTGCGCAACCCGCTGTTGCTAATGCTGACGATTATCG TAGTGCCGATCGTGTACGTAGGTTACACATTGGATGCTCCTACATATCTG GCTCCAGCGGTGATGGCCACTCTGAGGCCATTAGTAGATCAAGCTAAGGA CATGCTAGATCAGGCCACGAGCGCTCCTGCTACCGCGGGGGCTCCTGCTG CTGTAGGCGCGGCAGATTCTGCGTCAATGCCTAAACTTGCATCAAGCGAG AGCACAGCAGTATCAGCAAACCGCACGGAAAGCGCTGGGGCAGCAGCGAA GGCAGGCTAA back to topprotein sequence of Gcaud2225.t1 >Gcaud2225.t1 ID=Gcaud2225.t1|Name=Gcaud2225.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=870bp
MLLHNVQALRAQRVLREMLTLVSYLWPYKALPGAKQKERRVPWSLSSNKL HSALIASISDEPPSTEPVASHMVQVVNYEQEFNDELEKFLQAKHISELGF DYNVTAIMGPQSSGKSTLMNMLFGTKFPTMDSGGGRYQVTQGVWLGRDVD AGILVLDLEGTDSRERGEDAATYERKSALFALALAEVLVVNVWIHDVGRN NASNMPLLRTIMELDLQLFFGVTGSDSDAKRMPKTKLLFVIRDYDSTPMD KLCGSLREDLDNIWNTINKPPAAVDTPITDYFDLDFEALPHKVYCPNEFE EKVGELKRRFHGGDIFEKEYSRGVAADGFSEYARSVWETIRANKELDIPS QKEMLAHVRCEQIAKDVFFTFENATGRLKEDLLPADRSMPTIVPGLFSAL LESCDSAMGKYNEGASRYSKTVADMKAEDVRAHLSSECKMLFDAQITAAT DAAVRQFQEIVSGSEDGSISEPWLNWNENTKSAMESAMKVFDDACQTTLL CESVSDASEMKTHPLGFTISSSAMARKRLEKTLDTELRRETNRVLSESRT HCLETFHSAFKAPMTTVLESAPDDLWCRTSEVADVSWEATAKEAKTVYGE KGLALEEERMKSVEDELRSECHDSAVMDIRAAIGTPSNMLLRMMKRFEDA FRFDERGVPRHFGPNEDIEALFVAAREKGEKLAELLAEVRLEGSLAAART TASRDFGKKDNQLTIIDSNAKTDLKDKLKRQSGAIFMEAKRAQEAARITT KVPIWLIVVLLILGWNEFMAVLRNPLLLMLTIIVVPIVYVGYTLDAPTYL APAVMATLRPLVDQAKDMLDQATSAPATAGAPAAVGAADSASMPKLASSE STAVSANRTESAGAAAKAG* back to topmRNA from alignment at NODE_746_length_18753_cov_4.651538:12906..15756+ Legend: polypeptidestart_codonCDSexonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud2225.t1 ID=Gcaud2225.t1|Name=Gcaud2225.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2851bp|location=Sequence derived from alignment at NODE_746_length_18753_cov_4.651538:12906..15756+ (Gracilaria caudata M_176_S67 male) ATGTTACTGCACAATGTGCAGGCGTTGCGAGCTCAAAGAGTCTTGAGGGA
GATGTTAACGCTAGTATCCTACCTTTGGTAACGTCACCCTTGTATCTACT
TCAGGAGGGGGGTGGGTACCGTCGTACAACAGCAGAGACTGGAATTCTGA
CTTTTTGGTTTTTGAATTCAAAGGCCTTACAAGGGTACGTGGAACACGTT
CCCACGTTGACCCTTCGAAGTTCTGACGCCATGTATATTTTGACTGTCAT
TCCGTCAGCACTGCCTGGAGCAAAGCAGAAAGAGCGTCGTGTTCCCTGGA
GCCTTAGCTCCAATAAGCTTCACTCTGCGCTCATCGCCTGTCTTACCGCG
TCGCGCTGCGCCGCCTTTCTCTTTCAACTCCAACAAATTTCCCCTAACAA
ATGACCTCAGCTATTTCCGATGAGCCTCCTTCTACGGAGCCAGTGGCCTC
GCACATGGTGCAGGTCGTCAACTATGAACAAGAGTTCAACGATGAATTGG
AGAAATTTCTCCAAGCCAAGCACATATCAGAGCTGGGATTTGATTATAAT
GTAACCGCCATCATGGGGCCTCAGTCGTCGGGCAAGTCCACTTTAATGAA
TATGTTGTTTGGAACAAAGTTCCCGACCATGGACAGCGGCGGTGGTCGCT
ACCAGGTCACACAGGGTGTGTGGCTCGGACGAGACGTGGACGCAGGCATT
CTCGTCTTGGATTTGGAAGGAACAGATTCGCGCGAGAGAGGGGAGGATGC
CGCCACATACGAGAGAAAAAGCGCCTTGTTTGCCTTGGCTCTAGCCGAGG
TGCTCGTCGTGAATGTATGGATCCATGACGTCGGTCGAAACAACGCGTCA
AATATGCCTCTACTGCGAACCATCATGGAGCTTGACCTGCAACTATTCTT
CGGTGTTACTGGTTCGGACTCTGATGCAAAGCGAATGCCCAAGACGAAGT
TATTATTTGTTATTCGGGATTACGATTCCACGCCAATGGACAAGCTTTGC
GGTTCTCTTCGTGAGGACTTGGATAACATTTGGAATACGATTAACAAACC
ACCGGCTGCCGTGGATACTCCTATTACCGATTACTTTGATCTTGACTTTG
AAGCACTGCCGCACAAGGTGTATTGTCCGAACGAGTTTGAAGAGAAGGTA
GGAGAACTCAAGAGGCGTTTTCACGGCGGTGATATCTTCGAAAAGGAGTA
CAGTCGAGGCGTGGCTGCGGACGGCTTTTCAGAGTACGCAAGATCTGTGT
GGGAAACCATTCGCGCCAATAAGGAGCTCGACATTCCGTCACAGAAAGAG
ATGTTGGCTCACGTTCGGTGCGAACAGATAGCGAAGGATGTGTTCTTTAC
CTTTGAAAACGCAACAGGTCGCCTCAAAGAAGACCTTCTACCCGCGGACC
GATCAATGCCGACGATAGTACCTGGATTGTTCAGCGCGCTACTGGAAAGT
TGTGACAGCGCGATGGGCAAGTACAACGAAGGAGCTTCGCGTTACTCGAA
GACTGTCGCTGATATGAAAGCAGAGGATGTTCGCGCTCACCTTTCGTCCG
AATGCAAGATGCTGTTTGATGCTCAAATTACTGCTGCCACGGACGCAGCC
GTAAGACAGTTTCAAGAAATTGTGAGCGGTAGCGAAGACGGATCCATTTC
TGAACCATGGCTCAATTGGAATGAAAACACCAAGAGTGCTATGGAAAGCG
CGATGAAAGTCTTTGATGATGCATGTCAGACAACACTACTATGCGAAAGC
GTTTCAGATGCATCCGAGATGAAGACACATCCTCTTGGATTCACTATCTC
ATCATCTGCTATGGCTAGGAAGAGACTGGAGAAGACTTTGGACACGGAGC
TCAGACGCGAGACAAACAGGGTTCTTTCGGAATCTCGGACGCATTGTCTG
GAGACCTTCCACTCAGCGTTTAAAGCTCCGATGACTACTGTGTTAGAGAG
CGCCCCCGACGATCTATGGTGTCGAACTTCCGAAGTCGCAGACGTATCAT
GGGAAGCTACAGCCAAAGAAGCCAAGACGGTATACGGAGAGAAGGGACTT
GCACTGGAGGAAGAAAGGATGAAGAGTGTCGAGGATGAGCTGAGGAGCGA
ATGTCATGATTCGGCTGTCATGGATATCAGGGCTGCAATTGGTACTCCGT
CCAACATGCTTCTGAGAATGATGAAGCGATTCGAAGATGCCTTCCGCTTT
GACGAAAGGGGGGTACCAAGACATTTCGGACCGAATGAAGATATTGAGGC
GCTGTTTGTTGCTGCACGGGAAAAGGGGGAAAAGCTTGCCGAATTGCTAG
CAGAGGTCAGGTTAGAAGGCTCGCTTGCGGCTGCGAGAACCACAGCAAGC
CGTGACTTTGGCAAGAAAGACAATCAGTTGACGATCATAGATTCGAATGC
AAAGACGGATCTTAAGGACAAACTGAAGCGACAAAGCGGGGCGATCTTCA
TGGAGGCGAAGCGTGCACAGGAAGCAGCGAGAATTACAACCAAGGTTCCT
ATCTGGCTTATCGTGGTGCTGCTGATTCTCGGCTGGAATGAATTCATGGC
TGTCTTGCGCAACCCGCTGTTGCTAATGCTGACGATTATCGTAGTGCCGA
TCGTGTACGTAGGTTACACATTGGATGCTCCTACATATCTGGCTCCAGCG
GTGATGGCCACTCTGAGGCCATTAGTAGATCAAGCTAAGGACATGCTAGA
TCAGGCCACGAGCGCTCCTGCTACCGCGGGGGCTCCTGCTGCTGTAGGCG
CGGCAGATTCTGCGTCAATGCCTAAACTTGCATCAAGCGAGAGCACAGCA
GTATCAGCAAACCGCACGGAAAGCGCTGGGGCAGCAGCGAAGGCAGGCTA
A back to topCoding sequence (CDS) from alignment at NODE_746_length_18753_cov_4.651538:12906..15756+ >Gcaud2225.t1 ID=Gcaud2225.t1|Name=Gcaud2225.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2610bp|location=Sequence derived from alignment at NODE_746_length_18753_cov_4.651538:12906..15756+ (Gracilaria caudata M_176_S67 male) ATGTTACTGCACAATGTGCAGGCGTTGCGAGCTCAAAGAGTCTTGAGGGA GATGTTAACGCTAGTATCCTACCTTTGGCCTTACAAGGCACTGCCTGGAG CAAAGCAGAAAGAGCGTCGTGTTCCCTGGAGCCTTAGCTCCAATAAGCTT CACTCTGCGCTCATCGCCTCTATTTCCGATGAGCCTCCTTCTACGGAGCC AGTGGCCTCGCACATGGTGCAGGTCGTCAACTATGAACAAGAGTTCAACG ATGAATTGGAGAAATTTCTCCAAGCCAAGCACATATCAGAGCTGGGATTT GATTATAATGTAACCGCCATCATGGGGCCTCAGTCGTCGGGCAAGTCCAC TTTAATGAATATGTTGTTTGGAACAAAGTTCCCGACCATGGACAGCGGCG GTGGTCGCTACCAGGTCACACAGGGTGTGTGGCTCGGACGAGACGTGGAC GCAGGCATTCTCGTCTTGGATTTGGAAGGAACAGATTCGCGCGAGAGAGG GGAGGATGCCGCCACATACGAGAGAAAAAGCGCCTTGTTTGCCTTGGCTC TAGCCGAGGTGCTCGTCGTGAATGTATGGATCCATGACGTCGGTCGAAAC AACGCGTCAAATATGCCTCTACTGCGAACCATCATGGAGCTTGACCTGCA ACTATTCTTCGGTGTTACTGGTTCGGACTCTGATGCAAAGCGAATGCCCA AGACGAAGTTATTATTTGTTATTCGGGATTACGATTCCACGCCAATGGAC AAGCTTTGCGGTTCTCTTCGTGAGGACTTGGATAACATTTGGAATACGAT TAACAAACCACCGGCTGCCGTGGATACTCCTATTACCGATTACTTTGATC TTGACTTTGAAGCACTGCCGCACAAGGTGTATTGTCCGAACGAGTTTGAA GAGAAGGTAGGAGAACTCAAGAGGCGTTTTCACGGCGGTGATATCTTCGA AAAGGAGTACAGTCGAGGCGTGGCTGCGGACGGCTTTTCAGAGTACGCAA GATCTGTGTGGGAAACCATTCGCGCCAATAAGGAGCTCGACATTCCGTCA CAGAAAGAGATGTTGGCTCACGTTCGGTGCGAACAGATAGCGAAGGATGT GTTCTTTACCTTTGAAAACGCAACAGGTCGCCTCAAAGAAGACCTTCTAC CCGCGGACCGATCAATGCCGACGATAGTACCTGGATTGTTCAGCGCGCTA CTGGAAAGTTGTGACAGCGCGATGGGCAAGTACAACGAAGGAGCTTCGCG TTACTCGAAGACTGTCGCTGATATGAAAGCAGAGGATGTTCGCGCTCACC TTTCGTCCGAATGCAAGATGCTGTTTGATGCTCAAATTACTGCTGCCACG GACGCAGCCGTAAGACAGTTTCAAGAAATTGTGAGCGGTAGCGAAGACGG ATCCATTTCTGAACCATGGCTCAATTGGAATGAAAACACCAAGAGTGCTA TGGAAAGCGCGATGAAAGTCTTTGATGATGCATGTCAGACAACACTACTA TGCGAAAGCGTTTCAGATGCATCCGAGATGAAGACACATCCTCTTGGATT CACTATCTCATCATCTGCTATGGCTAGGAAGAGACTGGAGAAGACTTTGG ACACGGAGCTCAGACGCGAGACAAACAGGGTTCTTTCGGAATCTCGGACG CATTGTCTGGAGACCTTCCACTCAGCGTTTAAAGCTCCGATGACTACTGT GTTAGAGAGCGCCCCCGACGATCTATGGTGTCGAACTTCCGAAGTCGCAG ACGTATCATGGGAAGCTACAGCCAAAGAAGCCAAGACGGTATACGGAGAG AAGGGACTTGCACTGGAGGAAGAAAGGATGAAGAGTGTCGAGGATGAGCT GAGGAGCGAATGTCATGATTCGGCTGTCATGGATATCAGGGCTGCAATTG GTACTCCGTCCAACATGCTTCTGAGAATGATGAAGCGATTCGAAGATGCC TTCCGCTTTGACGAAAGGGGGGTACCAAGACATTTCGGACCGAATGAAGA TATTGAGGCGCTGTTTGTTGCTGCACGGGAAAAGGGGGAAAAGCTTGCCG AATTGCTAGCAGAGGTCAGGTTAGAAGGCTCGCTTGCGGCTGCGAGAACC ACAGCAAGCCGTGACTTTGGCAAGAAAGACAATCAGTTGACGATCATAGA TTCGAATGCAAAGACGGATCTTAAGGACAAACTGAAGCGACAAAGCGGGG CGATCTTCATGGAGGCGAAGCGTGCACAGGAAGCAGCGAGAATTACAACC AAGGTTCCTATCTGGCTTATCGTGGTGCTGCTGATTCTCGGCTGGAATGA ATTCATGGCTGTCTTGCGCAACCCGCTGTTGCTAATGCTGACGATTATCG TAGTGCCGATCGTGTACGTAGGTTACACATTGGATGCTCCTACATATCTG GCTCCAGCGGTGATGGCCACTCTGAGGCCATTAGTAGATCAAGCTAAGGA CATGCTAGATCAGGCCACGAGCGCTCCTGCTACCGCGGGGGCTCCTGCTG CTGTAGGCGCGGCAGATTCTGCGTCAATGCCTAAACTTGCATCAAGCGAG AGCACAGCAGTATCAGCAAACCGCACGGAAAGCGCTGGGGCAGCAGCGAA GGCAGGCTAA back to top
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