Gcaud2226.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2226.t1
Unique Name	Gcaud2226.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	450

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_746_length_18753_cov_4.651538	contig	NODE_746_length_18753_cov_4.651538:16381..17730 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005706240.1
Preferred name	USP46
PFAMs	UCH
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K11842,ko:K11872
GOs	GO:0000578,GO:0001662,GO:0002209,GO:0002682,GO:0002684,GO:0003002,GO:0003674,GO:0003824,GO:0004175,GO:0004197,GO:0004843,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005768,GO:0005829,GO:0006355,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006897,GO:0006950,GO:0006952,GO:0007154,GO:0007275,GO:0007350,GO:0007351,GO:0007389,GO:0007584,GO:0007610,GO:0007631,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0008343,GO:0008593,GO:0008595,GO:0009056,GO:0009057,GO:0009605,GO:0009636,GO:0009790,GO:0009798,GO:0009880,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009948,GO:0009952,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0009991,GO:0010033,GO:0010468,GO:0010469,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010646,GO:0010647,GO:0010648,GO:0010992,GO:0010995,GO:0012505,GO:0016043,GO:0016192,GO:0016579,GO:0016787,GO:0019219,GO:0019222,GO:0019538,GO:0019725,GO:0019783,GO:0019941,GO:0022411,GO:0022898,GO:0023051,GO:0023056,GO:0023057,GO:0030163,GO:0030534,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031670,GO:0031974,GO:0031981,GO:0031982,GO:0032228,GO:0032409,GO:0032412,GO:0032501,GO:0032502,GO:0032879,GO:0032984,GO:0033555,GO:0034762,GO:0034765,GO:0035254,GO:0035255,GO:0035282,GO:0035871,GO:0036211,GO:0036459,GO:0036477,GO:0040012,GO:0040017,GO:0042221,GO:0042493,GO:0042592,GO:0042596,GO:0043025,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043269,GO:0043412,GO:0043624,GO:0043632,GO:0043933,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044297,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045013,GO:0045471,GO:0045746,GO:0045892,GO:0045934,GO:0045990,GO:0046677,GO:0048149,GO:0048518,GO:0048519,GO:0048520,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048856,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050795,GO:0050804,GO:0050854,GO:0050856,GO:0050857,GO:0050862,GO:0050896,GO:0051049,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051252,GO:0051253,GO:0051261,GO:0051603,GO:0051716,GO:0060004,GO:0060013,GO:0060255,GO:0061984,GO:0061985,GO:0065007,GO:0065008,GO:0065009,GO:0070011,GO:0070013,GO:0070646,GO:0070647,GO:0070887,GO:0071108,GO:0071496,GO:0071704,GO:0071840,GO:0071947,GO:0080090,GO:0090325,GO:0090326,GO:0097305,GO:0097458,GO:0097708,GO:0098657,GO:0099177,GO:0099601,GO:0101005,GO:0140096,GO:1900449,GO:1901564,GO:1901565,GO:1901575,GO:1901700,GO:1902679,GO:1903506,GO:1903507,GO:1904062,GO:2000112,GO:2000113,GO:2000311,GO:2001141,GO:2001257
Evalue	7.77e-158
EggNOG OGs	KOG1864@1\|root,KOG1864@2759\|Eukaryota
EC	3.4.19.12
Description	ubiquitinyl hydrolase activity
COG category	O
BRITE	ko00000,ko01000,ko01002,ko04121

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2226	Gcaud2226	Gracilaria caudata M_176_S67 male	gene	NODE_746_length_18753_cov_4.651538 16381..17730 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2226.t1.start1	Gcaud2226.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_746_length_18753_cov_4.651538 16381..16383 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2226.t1.CDS1	Gcaud2226.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_746_length_18753_cov_4.651538 16381..17730 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2226.t1.exon1	Gcaud2226.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_746_length_18753_cov_4.651538 16381..17730 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2226.t1.stop1	Gcaud2226.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_746_length_18753_cov_4.651538 17728..17730 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2226.t1	Gcaud2226.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_746_length_18753_cov_4.651538 16381..17730 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_746_length_18753_cov_4.651538:16381..17730+
coding sequence from alignment at NODE_746_length_18753_cov_4.651538:16381..17730+

mRNA sequence

>Gcaud2226.t1 ID=Gcaud2226.t1|Name=Gcaud2226.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=450bp
MGSVNSTGNKLEKALHADLPEDERYFGLENFGNTCYCNSVLQALYFCEPF
RKAVLDYTNNRRIAKPQPIDSRVNSSSLFSTAPSLLPKTANAATPLGNAV
SNVARPGDGASPNDYAAPSPNFLDSSDNGAEETMLTALGDLFMQIATQKK
RTGSVPPKTFVNKLRQENELFSSYMHQDAHEFLNFILNEVVECLRKENSA
KRQREQNDLSKDTYANYLTNINGKLQNGTTISVSDDSCAEEKENPKTFVH
ELFEGHLSNEVRCLCCETVTQRVESFFDLSVDVEQNSSLTSCLRNFSSTE
LLEKQDKFFCDACCSLQEAERRMRIKQLPKILALHLKRFKYVEPLGKYKK
LNYRVVFPLELRLCNTSDDAEDPDRLYSLFAVVVHVGSGPNQGHYVSLIK
SHRQWLMFDDDAVEPKDEGEIQSVYGVTQESAQSTEAGYILFYEQANAS*

spliced messenger RNA

>Gcaud2226.t1 ID=Gcaud2226.t1|Name=Gcaud2226.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1350bp|location=Sequence derived from alignment at NODE_746_length_18753_cov_4.651538:16381..17730+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTTCCGTCAACTCCACGGGCAACAAATTGGAGAAGGCTTTGCATGC
TGACCTTCCGGAGGACGAACGATACTTTGGCCTCGAGAACTTCGGCAACA
CTTGCTACTGCAACTCCGTGTTGCAGGCGCTCTACTTTTGCGAGCCATTT
CGAAAGGCTGTACTGGATTACACCAACAATCGCAGGATCGCCAAGCCGCA
ACCGATTGATTCTCGAGTCAACTCCTCCAGTTTGTTTTCCACCGCCCCGT
CTTTGTTGCCGAAGACTGCCAATGCCGCAACCCCCCTTGGTAATGCAGTT
TCGAACGTTGCGCGTCCTGGTGACGGCGCTTCACCAAATGATTACGCCGC
GCCCAGCCCCAACTTTCTCGACTCCAGCGATAACGGAGCGGAGGAAACTA
TGCTTACTGCCCTTGGCGACTTATTCATGCAGATTGCTACACAGAAGAAG
CGTACGGGCTCTGTACCACCAAAAACGTTTGTTAACAAGTTGCGTCAGGA
GAATGAACTCTTCTCAAGCTACATGCATCAGGATGCGCATGAATTTCTCA
ACTTCATTCTCAATGAAGTTGTCGAATGTCTGCGTAAAGAGAACTCTGCG
AAGCGGCAACGTGAACAGAATGATCTTTCGAAGGATACTTACGCCAATTA
CCTCACAAACATCAACGGAAAGCTGCAAAATGGCACCACCATTTCCGTTT
CGGATGATTCCTGTGCGGAAGAAAAAGAAAACCCTAAGACATTTGTGCAT
GAGTTGTTCGAGGGTCATCTTTCGAACGAGGTAAGATGTCTATGTTGTGA
AACTGTCACGCAGAGGGTAGAGTCGTTCTTTGACTTGAGCGTCGATGTTG
AACAAAACTCATCGCTCACGTCATGCCTTCGCAATTTCTCCTCCACCGAA
CTGCTTGAGAAACAGGACAAGTTTTTCTGCGACGCGTGCTGTTCGCTTCA
GGAAGCTGAGAGACGAATGAGAATCAAGCAGCTGCCCAAGATTCTTGCAT
TGCATTTGAAACGTTTCAAATATGTCGAACCATTGGGCAAGTACAAGAAG
CTCAACTATAGGGTTGTATTTCCTCTCGAGCTCCGTCTTTGTAACACTAG
CGATGACGCGGAGGATCCCGATCGTCTGTATTCTTTATTTGCGGTAGTAG
TTCACGTTGGATCGGGTCCGAATCAAGGTCATTATGTATCTCTCATCAAA
TCTCATCGGCAATGGCTGATGTTCGACGACGATGCAGTAGAGCCAAAGGA
CGAAGGGGAAATTCAAAGTGTATACGGCGTGACACAAGAGAGTGCGCAAA
GCACAGAAGCTGGGTACATTTTGTTCTACGAGCAAGCTAACGCCTCCTAG

protein sequence of Gcaud2226.t1

>Gcaud2226.t1 ID=Gcaud2226.t1|Name=Gcaud2226.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=450bp
MGSVNSTGNKLEKALHADLPEDERYFGLENFGNTCYCNSVLQALYFCEPF
RKAVLDYTNNRRIAKPQPIDSRVNSSSLFSTAPSLLPKTANAATPLGNAV
SNVARPGDGASPNDYAAPSPNFLDSSDNGAEETMLTALGDLFMQIATQKK
RTGSVPPKTFVNKLRQENELFSSYMHQDAHEFLNFILNEVVECLRKENSA
KRQREQNDLSKDTYANYLTNINGKLQNGTTISVSDDSCAEEKENPKTFVH
ELFEGHLSNEVRCLCCETVTQRVESFFDLSVDVEQNSSLTSCLRNFSSTE
LLEKQDKFFCDACCSLQEAERRMRIKQLPKILALHLKRFKYVEPLGKYKK
LNYRVVFPLELRLCNTSDDAEDPDRLYSLFAVVVHVGSGPNQGHYVSLIK
SHRQWLMFDDDAVEPKDEGEIQSVYGVTQESAQSTEAGYILFYEQANAS*

mRNA from alignment at NODE_746_length_18753_cov_4.651538:16381..17730+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2226.t1 ID=Gcaud2226.t1|Name=Gcaud2226.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1350bp|location=Sequence derived from alignment at NODE_746_length_18753_cov_4.651538:16381..17730+ (Gracilaria caudata M_176_S67 male)
ATGGGTTCCGTCAACTCCACGGGCAACAAATTGGAGAAGGCTTTGCATGC
TGACCTTCCGGAGGACGAACGATACTTTGGCCTCGAGAACTTCGGCAACA
CTTGCTACTGCAACTCCGTGTTGCAGGCGCTCTACTTTTGCGAGCCATTT
CGAAAGGCTGTACTGGATTACACCAACAATCGCAGGATCGCCAAGCCGCA
ACCGATTGATTCTCGAGTCAACTCCTCCAGTTTGTTTTCCACCGCCCCGT
CTTTGTTGCCGAAGACTGCCAATGCCGCAACCCCCCTTGGTAATGCAGTT
TCGAACGTTGCGCGTCCTGGTGACGGCGCTTCACCAAATGATTACGCCGC
GCCCAGCCCCAACTTTCTCGACTCCAGCGATAACGGAGCGGAGGAAACTA
TGCTTACTGCCCTTGGCGACTTATTCATGCAGATTGCTACACAGAAGAAG
CGTACGGGCTCTGTACCACCAAAAACGTTTGTTAACAAGTTGCGTCAGGA
GAATGAACTCTTCTCAAGCTACATGCATCAGGATGCGCATGAATTTCTCA
ACTTCATTCTCAATGAAGTTGTCGAATGTCTGCGTAAAGAGAACTCTGCG
AAGCGGCAACGTGAACAGAATGATCTTTCGAAGGATACTTACGCCAATTA
CCTCACAAACATCAACGGAAAGCTGCAAAATGGCACCACCATTTCCGTTT
CGGATGATTCCTGTGCGGAAGAAAAAGAAAACCCTAAGACATTTGTGCAT
GAGTTGTTCGAGGGTCATCTTTCGAACGAGGTAAGATGTCTATGTTGTGA
AACTGTCACGCAGAGGGTAGAGTCGTTCTTTGACTTGAGCGTCGATGTTG
AACAAAACTCATCGCTCACGTCATGCCTTCGCAATTTCTCCTCCACCGAA
CTGCTTGAGAAACAGGACAAGTTTTTCTGCGACGCGTGCTGTTCGCTTCA
GGAAGCTGAGAGACGAATGAGAATCAAGCAGCTGCCCAAGATTCTTGCAT
TGCATTTGAAACGTTTCAAATATGTCGAACCATTGGGCAAGTACAAGAAG
CTCAACTATAGGGTTGTATTTCCTCTCGAGCTCCGTCTTTGTAACACTAG
CGATGACGCGGAGGATCCCGATCGTCTGTATTCTTTATTTGCGGTAGTAG
TTCACGTTGGATCGGGTCCGAATCAAGGTCATTATGTATCTCTCATCAAA
TCTCATCGGCAATGGCTGATGTTCGACGACGATGCAGTAGAGCCAAAGGA
CGAAGGGGAAATTCAAAGTGTATACGGCGTGACACAAGAGAGTGCGCAAA
GCACAGAAGCTGGGTACATTTTGTTCTACGAGCAAGCTAACGCCTCCTAG

Coding sequence (CDS) from alignment at NODE_746_length_18753_cov_4.651538:16381..17730+

>Gcaud2226.t1 ID=Gcaud2226.t1|Name=Gcaud2226.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1350bp|location=Sequence derived from alignment at NODE_746_length_18753_cov_4.651538:16381..17730+ (Gracilaria caudata M_176_S67 male)
ATGGGTTCCGTCAACTCCACGGGCAACAAATTGGAGAAGGCTTTGCATGC
TGACCTTCCGGAGGACGAACGATACTTTGGCCTCGAGAACTTCGGCAACA
CTTGCTACTGCAACTCCGTGTTGCAGGCGCTCTACTTTTGCGAGCCATTT
CGAAAGGCTGTACTGGATTACACCAACAATCGCAGGATCGCCAAGCCGCA
ACCGATTGATTCTCGAGTCAACTCCTCCAGTTTGTTTTCCACCGCCCCGT
CTTTGTTGCCGAAGACTGCCAATGCCGCAACCCCCCTTGGTAATGCAGTT
TCGAACGTTGCGCGTCCTGGTGACGGCGCTTCACCAAATGATTACGCCGC
GCCCAGCCCCAACTTTCTCGACTCCAGCGATAACGGAGCGGAGGAAACTA
TGCTTACTGCCCTTGGCGACTTATTCATGCAGATTGCTACACAGAAGAAG
CGTACGGGCTCTGTACCACCAAAAACGTTTGTTAACAAGTTGCGTCAGGA
GAATGAACTCTTCTCAAGCTACATGCATCAGGATGCGCATGAATTTCTCA
ACTTCATTCTCAATGAAGTTGTCGAATGTCTGCGTAAAGAGAACTCTGCG
AAGCGGCAACGTGAACAGAATGATCTTTCGAAGGATACTTACGCCAATTA
CCTCACAAACATCAACGGAAAGCTGCAAAATGGCACCACCATTTCCGTTT
CGGATGATTCCTGTGCGGAAGAAAAAGAAAACCCTAAGACATTTGTGCAT
GAGTTGTTCGAGGGTCATCTTTCGAACGAGGTAAGATGTCTATGTTGTGA
AACTGTCACGCAGAGGGTAGAGTCGTTCTTTGACTTGAGCGTCGATGTTG
AACAAAACTCATCGCTCACGTCATGCCTTCGCAATTTCTCCTCCACCGAA
CTGCTTGAGAAACAGGACAAGTTTTTCTGCGACGCGTGCTGTTCGCTTCA
GGAAGCTGAGAGACGAATGAGAATCAAGCAGCTGCCCAAGATTCTTGCAT
TGCATTTGAAACGTTTCAAATATGTCGAACCATTGGGCAAGTACAAGAAG
CTCAACTATAGGGTTGTATTTCCTCTCGAGCTCCGTCTTTGTAACACTAG
CGATGACGCGGAGGATCCCGATCGTCTGTATTCTTTATTTGCGGTAGTAG
TTCACGTTGGATCGGGTCCGAATCAAGGTCATTATGTATCTCTCATCAAA
TCTCATCGGCAATGGCTGATGTTCGACGACGATGCAGTAGAGCCAAAGGA
CGAAGGGGAAATTCAAAGTGTATACGGCGTGACACAAGAGAGTGCGCAAA
GCACAGAAGCTGGGTACATTTTGTTCTACGAGCAAGCTAACGCCTCCTAG