Gcaud3009.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud3009.t1
Unique NameGcaud3009.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length276
Homology
BLAST of Gcaud3009.t1 vs. uniprot
Match: A0A2V3J103_9FLOR (Putative RNA-binding protein RbpE n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J103_9FLOR)

HSP 1 Score: 329 bits (844), Expect = 1.250e-110
Identity = 169/278 (60.79%), Postives = 210/278 (75.54%), Query Frame = 0
Query:    1 MMAFLSGPPSIPLNTPGRQARSVCKCRPPVPRPARVVFSALIDEKKALSEPDSESVTGSVSPKTDEEGLLQPRAFTDNNDAAQPPSVSAPNEPRRYISRPRFQPDPEATYYTKCSKCSAAYELDPTVLGNGRRVACSVCGNEWFQKPERLFTLRESEQFTDYPMDKKDEILQQNQQNQRGRNAGRR--RDRQPN-SRAFSVFIGNLPFSVSQQELSEIIANIVTPKRVAIVVDADGRSRGYAFADVNSNEEVEQLVNALHSTSVKGRTIAVRPGRRNS 275
            MMAFLSGPP IP N PGR ARSVC  RPPVPRP RV FSALIDE K LSEP  + +T  +     +E         +    A+P   +   +PRR+ S PRF PDP A YYTKC+KCSAAYELDP VLGNGRRVACSVC NEWFQKP+RLF +RE+EQF++YPMD+K E+L++NQQN R R   RR  RDR+P  ++ FSVFIGNLP+SV++QEL+E+I+++V PKR++IV D DG S+G+AFADV S EEV+Q+V +L +T + GRTIAVRPG++NS
Sbjct:    1 MMAFLSGPPLIPYNVPGRTARSVCSYRPPVPRPPRVFFSALIDESKPLSEPPRDLLTEPLHRDLPKESEPDSALPPEQRSVARPSRPTHSRDPRRFESPPRFTPDPNAVYYTKCAKCSAAYELDPLVLGNGRRVACSVCSNEWFQKPDRLFKMRETEQFSEYPMDRKAELLERNQQN-RARGGRRRDTRDRRPTYTKTFSVFIGNLPYSVTEQELTELISSVVKPKRISIVTDQDGNSKGFAFADVQSEEEVDQIVRSLDATRIAGRTIAVRPGKKNS 277          
BLAST of Gcaud3009.t1 vs. uniprot
Match: R7QQ59_CHOCR (RRM domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QQ59_CHOCR)

HSP 1 Score: 189 bits (481), Expect = 1.580e-55
Identity = 125/303 (41.25%), Postives = 166/303 (54.79%), Query Frame = 0
Query:    1 MMAFLSGPPSIPLNTPGRQARSVCKCRP-PVPRPARVVFSALIDEKKALSEPDSESVTGSVSPKTDEEGLLQPRAFTDNNDAAQPPSVSAPNEPR-----RYISRPRFQPDPEATYYTKCSKCSAAYELDPTVLG-NGRRVACSVCGNEWFQKPERLFTLRESEQFTDYPMDKKDEILQQNQQ----------NQRG-RNAGRRRD--------RQPNSRAFS---VFIGNLPFSVSQQELSEIIANIVTPKRVAIVVDADGRSRGYAFADVNSNEEVEQLVNALHSTSVKGRTIAVRPGRRN 274
            M AFL  P +  L+  G +   +C  RP P  +PARV  SA IDE      P ++S+     P        +          A  P +     PR     R   RP F PDP ATY+TKC  C AAY+LDP   G  G++VACSVCGN+WFQ+ +RL TLR+ +QF +YP+D+KDE++++ QQ          N  G R  G RRD        R+ NSR FS   +FIGNLPF+  Q++L  ++  +V   RVAI+ D  GRS+G+AFADV S E V+  V+ L    + GR I VR GR+N
Sbjct:    1 MTAFLPTPGAPILSGRGTRGAQICSRRPAPSRQPARVYVSAAIDEA-----PPNDSIPVPRPPPQ------RXXXXXXXXXXAPTPYIYRGERPRPSGDYRGAPRPAFIPDPTATYFTKCGSCQAAYKLDPDFPGPRGKKVACSVCGNQWFQRADRLMTLRQGDQFKEYPVDQKDELMEKQQQLRMERFRARSNDGGDRRGGYRRDGPREGQGARRSNSRNFSPHSLFIGNLPFNTEQEDLERVVGQVVEFTRVAIIRDPTGRSKGFAFADVKSEEAVQMAVSKLDGKELGGRAITVREGRKN 292          
BLAST of Gcaud3009.t1 vs. uniprot
Match: A0A6H5K2C5_9PHAE (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K2C5_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 1.380e-25
Identity = 59/165 (35.76%), Postives = 86/165 (52.12%), Query Frame = 0
Query:  111 YTKCSKCSAAYELDPTVLGNGRRVACSVCGNEWFQKPERLFTLRESEQFTDYPMDKKDEILQQNQQNQRGRNAGRRRDRQPNSRAFSVFIGNLPFSVSQQELSEIIANIVTPKRVAIVVDADGRSRGYAFADVNSNEEVEQLVNALHSTSVKGRTIAVRPGRRNS 275
            Y KC KC A Y ++  VLG GR + CSVCGN WFQ  ER  TL E+    D+  D+                     +   N   F++F+GN+PFSVS+++L  I  N    K  A+V D +G SRGY    + + E+  + + AL+   ++GR++ V+ G  NS
Sbjct:  145 YVKCGKCQACYPMELDVLGRGRIIECSVCGNRWFQTAERALTLTENFLMKDWTEDR----------------VAATAEAAKNFAGFNLFVGNIPFSVSEKDLGAIFGNFGEVKSTALVTDENGDSRGYGSVKMGTEEDGRKAIKALNGIEIQGRSMLVKVGASNS 293          
BLAST of Gcaud3009.t1 vs. uniprot
Match: A0A7S3AAQ8_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3AAQ8_9RHOD)

HSP 1 Score: 109 bits (272), Expect = 5.710e-25
Identity = 60/173 (34.68%), Postives = 107/173 (61.85%), Query Frame = 0
Query:  105 DPEATYYTKCSKCSAAYELDPTVLG-NGRRVACSVCGNEWFQKPERLFTLRES-EQFTDYPMDKKDEILQQNQQNQRGRNAGRRRDRQPNSRAFSVFIGNLPFSVSQQELSEIIANIVTPKRVAIVVDADGRSRGYAFADVNSNEEVEQLVNALHSTSVKGRTIAVRPGRRNS 275
            DP+  YY++CSKC A YEL P VLG +G +V CSVC N+W+Q+ ++L  L  + ++  D+P  ++ E  +++  ++ G N G R    P+ + ++ F+GNL F+ +++EL +++ +    +    VV+ DGRS+G+AF D  + E++ + ++ L    + GR I  + GR +S
Sbjct:   87 DPDVVYYSQCSKCKAVYELRPKVLGLDGSKVQCSVCKNQWYQRRDKLMELDPAVDELEDFPESER-ERFKRSSPSRGGYNGGGR----PSGQFYTAFVGNLSFNTTREELYDLVKDRDVVR--CHVVEKDGRSKGFAFIDFRTKEQLNKAMDELDGYELGGRQIIFKEGRNSS 252          
BLAST of Gcaud3009.t1 vs. uniprot
Match: A0A8J2SPH7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SPH7_9STRA)

HSP 1 Score: 108 bits (270), Expect = 2.080e-24
Identity = 59/173 (34.10%), Postives = 93/173 (53.76%), Query Frame = 0
Query:  105 DPEATYYTKCSKCSAAYELDPTVLGNGR--RVACSVCGNEWFQKPERLFTLRESEQFTDYPMDKKDEILQQNQQNQRGRNAGRRRDRQPNSR-AFSVFIGNLPFSVSQQELSEIIANIVTPKRVAIVVDADGRSRGYAFADVNSNEEVEQLVNALHSTSVKGRTIAVRPGRRN 274
            D +  +   C  C A Y +D  +LG G   +V C VCGN WFQ   R+ TL +  +  +Y  +K  E +  ++Q  R + A    DR P  R A ++F+ NLPF  S  ++  + A +       +V+D DGRSRGY F ++    + E+L++  H + V GR + VRPG+++
Sbjct:   95 DEDVQHIITCGSCKAVYAIDKDILGKGAGAKVQCEVCGNVWFQATARVNTLFDGFELKEYDAEKAQEAI--DKQKARAKEAA---DRPPRKRGAATLFVANLPFRYSDDDVVALFAEVAPITSAQVVMDDDGRSRGYGFVEIEVAADAERLISEFHGSDVGGRDLIVRPGKQS 262          
BLAST of Gcaud3009.t1 vs. uniprot
Match: A0A7S0G725_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G725_9RHOD)

HSP 1 Score: 106 bits (265), Expect = 5.820e-24
Identity = 61/173 (35.26%), Postives = 101/173 (58.38%), Query Frame = 0
Query:  105 DPEATYYTKCSKCSAAYELDPTVLG-NGRRVACSVCGNEWFQKPERLFTLRES-EQFTDYPMDKKDEILQQNQQNQRGRNAGRRRDRQPNSRAFSVFIGNLPFSVSQQELSEIIANIVTPKRVAIVVDADGRSRGYAFADVNSNEEVEQLVNALHSTSVKGRTIAVRPGRRNS 275
            DP   YY++CSKC A YEL P VLG  G +V CSVC N+W+Q+ ++L  L  + E+  D+P  ++++  + +    RG   GR        + ++ F+GNL FS ++ EL +++ +    +    VV+ DGRS+G+AF D  + E++ + ++ L    + GR I V+ GR +S
Sbjct:   88 DPNVVYYSQCSKCGAVYELRPKVLGLEGSKVQCSVCKNQWYQRRDKLMELDPAVEELEDFPESEREKFKRSSPH--RGGYNGRH-----GGQFYTAFVGNLSFSTTRDELYDLVKDRDVVR--CHVVEKDGRSKGFAFVDFRTKEQLTKAMDELDGQELGGRQIIVKEGRNSS 251          
BLAST of Gcaud3009.t1 vs. uniprot
Match: A0A835YSE2_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSE2_9STRA)

HSP 1 Score: 103 bits (256), Expect = 1.820e-23
Identity = 59/162 (36.42%), Postives = 86/162 (53.09%), Query Frame = 0
Query:  111 YTKCSKCSAAYELDPTVLGN-GRRVACSVCGNEWFQKPERLFTLRESEQFTDYPMDKKDEILQQNQQNQRGRNAGRRRDRQPNSRAFSVFIGNLPFSVSQQELSEIIANIVTPKRVAIVVDADGRSRGYAFADVNSNEEVEQLVNALHSTSVKGRTIAVRPG 271
            Y KC  CSA Y +DP +LG  GRRV CSVC + WFQ  ER+F L       D+P +K   I    +Q   G  AG            ++F+GNLPFS  +++LS++ A+        I+ D   RS+GY F ++ +  + +  ++ LH+  + GR I VR G
Sbjct:    5 YIKCGSCSAVYTIDPQMLGERGRRVQCSVCDHSWFQASERVFRLGNGFSMKDFPEEKLAAIKANIEQ---GLTAGGAPKGNGRKGEMTMFVGNLPFSFGEKDLSDLFADHGEVVSAVIIKDNMDRSKGYGFVEMLNKAQGQAAMDTLHNYQINGRPITVRDG 163          
BLAST of Gcaud3009.t1 vs. uniprot
Match: R1FCJ1_EMIHU (RRM domain-containing protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1FCJ1_EMIHU)

HSP 1 Score: 99.8 bits (247), Expect = 1.440e-21
Identity = 58/161 (36.02%), Postives = 85/161 (52.80%), Query Frame = 0
Query:  114 CSKCSAAYELDPTVLGNG--RRVACSVCGNEWFQKPERLFTLRESEQFTDYPMDKKDEILQQNQQNQRGRNAGRRRDRQPNSRAFSVFIGNLPFSVSQQELSEIIANIVTPKRVAIVVDADGRSRGYAFADVNSNEEVEQLVNALHSTSVKGRTIAVRPGR 272
            CS C A+Y ++   LG G  +RV CS C +EWFQ   RL  L E  +  +YP + KD +            AG+  + +    AF  ++GNLPF V ++EL+++         V ++ D DGRSRG+AF ++   EE    V AL+   ++GR I V  GR
Sbjct:   51 CSNCKASYSVEEDALGPGAGKRVRCSNCDHEWFQSVARLARLPEDMELVEYPQEMKDRMA-----------AGKPAEARA---AFRAYVGNLPFGVVEEELADLFGEYGNVVHVNVMTDEDGRSRGFAFVNMEIAEEGAAAVEALNGHMLQGRAINVSEGR 197          
BLAST of Gcaud3009.t1 vs. uniprot
Match: A0A7S3TR26_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3TR26_EMIHU)

HSP 1 Score: 95.5 bits (236), Expect = 3.240e-20
Identity = 54/166 (32.53%), Postives = 89/166 (53.61%), Query Frame = 0
Query:  111 YTKCSKCSAAYELDPTVLGNGRRVAC--SVCGNEWFQKPERLFTLRESEQFTDYPMDKKDEILQQNQQNQRGRNAGRRRDRQPNSRAFSVFIGNLPFSVSQQELSEIIANIVTPKRVAIVVDADGRSRGYAFADVNSNEEVEQLVNALHSTSVKGRTIAVRPGRRN 274
            +  C++C A +E+D      GR+V C  + C +EWFQ  +RL TL    +  +YP + KD I         G++A      +P  R F++F+GNL +SV++ +L E+   I +  +V I+ D DGR RG+ F ++       + V  L    ++GR+I V  G++N
Sbjct:   36 FVTCARCKATFEVDEADFATGRQVRCGGTGCDHEWFQTADRLQTLPNGMELVEYPQEMKDRIAA-------GKSA------EPVGR-FNIFVGNLAYSVAEDDLREVFEGIGSVAKVIIMTDDDGRPRGFGFVNMEEEAAGARAVKELDGYELQGRSITVSEGKQN 187          
BLAST of Gcaud3009.t1 vs. uniprot
Match: A0A7S1TD30_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TD30_9RHOD)

HSP 1 Score: 95.5 bits (236), Expect = 1.140e-19
Identity = 58/164 (35.37%), Postives = 88/164 (53.66%), Query Frame = 0
Query:  109 TYYTKCSKCSAAYELDPTVLGN-GRRVACSVCGNEWFQKPERLFTLRESEQFTDYPMDKKDEILQQNQQNQRGRNAGRRRDRQPNSRAFSVFIGNLPFSVSQQELSEIIANIVTPKRVAIVVDADGRSRGYAFADVNSNEEVEQLVNALHSTSVKGRTIAVRPG 271
            T YT+C +C + + +    LG+ GR+V C VC + WFQ   RL  L E E   D    ++D  +++ +   R R A            F++F+GNLPFSVS+ +L  I +     +RV I    +GRSRG+AF DV S E+++  +  +    V GR ++VR G
Sbjct:   99 TTYTECVRCGSKFAVSDRELGDKGRKVQCGVCKHVWFQHTNRLSELAEGESLRDMTPAEQDIAIERTKT--RSRRATSDAGASEGGSQFTLFVGNLPFSVSEDDLRVIFSQHCKVQRVHIAT-TEGRSRGFAFVDVASEEDMKLAIEKVSGMDVGGREVSVRQG 259          
The following BLAST results are available for this feature:
BLAST of Gcaud3009.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J103_9FLOR1.250e-11060.79Putative RNA-binding protein RbpE n=1 Tax=Gracilar... [more]
R7QQ59_CHOCR1.580e-5541.25RRM domain-containing protein n=1 Tax=Chondrus cri... [more]
A0A6H5K2C5_9PHAE1.380e-2535.76RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S3AAQ8_9RHOD5.710e-2534.68Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A8J2SPH7_9STRA2.080e-2434.10Hypothetical protein (Fragment) n=1 Tax=Pelagomona... [more]
A0A7S0G725_9RHOD5.820e-2435.26Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A835YSE2_9STRA1.820e-2336.42RRM domain-containing protein n=1 Tax=Tribonema mi... [more]
R1FCJ1_EMIHU1.440e-2136.02RRM domain-containing protein n=2 Tax=Emiliania hu... [more]
A0A7S3TR26_EMIHU3.240e-2032.53Hypothetical protein (Fragment) n=1 Tax=Emiliania ... [more]
A0A7S1TD30_9RHOD1.140e-1935.37Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 197..269
e-value: 1.2E-13
score: 61.4
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 198..266
e-value: 4.4E-12
score: 45.7
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 196..273
score: 14.743426
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 133..269
e-value: 8.7E-20
score: 73.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 48..93
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 162..191
NoneNo IPR availablePANTHERPTHR23003RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEINcoord: 39..274
NoneNo IPR availableCDDcd00590RRM_SFcoord: 198..269
e-value: 5.28395E-15
score: 66.5597
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 172..273

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_117_length_47832_cov_4.546323contigNODE_117_length_47832_cov_4.546323:18613..19440 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3009.t1Gcaud3009.t1Gracilaria caudata M_176_S67 malemRNANODE_117_length_47832_cov_4.546323 18613..19440 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud3009.t1 ID=Gcaud3009.t1|Name=Gcaud3009.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=276bp
MMAFLSGPPSIPLNTPGRQARSVCKCRPPVPRPARVVFSALIDEKKALSE
PDSESVTGSVSPKTDEEGLLQPRAFTDNNDAAQPPSVSAPNEPRRYISRP
RFQPDPEATYYTKCSKCSAAYELDPTVLGNGRRVACSVCGNEWFQKPERL
FTLRESEQFTDYPMDKKDEILQQNQQNQRGRNAGRRRDRQPNSRAFSVFI
GNLPFSVSQQELSEIIANIVTPKRVAIVVDADGRSRGYAFADVNSNEEVE
QLVNALHSTSVKGRTIAVRPGRRNS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf