Gcaud3009.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3009.t1
Unique NameGcaud3009.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length276
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_117_length_47832_cov_4.546323contigNODE_117_length_47832_cov_4.546323:18613..19440 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D7G7E1
PFAMsPALP,RRM_1
Max annot lvl2759|Eukaryota
KEGG rclassRC00331,RC00418,RC02600
KEGG koko:K17989
KEGG ReactionR00220,R00590,R00996
KEGG Pathwayko00260,ko00270,ko00290,ko01100,ko01110,ko01130,ko01200,ko01230,map00260,map00270,map00290,map01100,map01110,map01130,map01200,map01230
KEGG ModuleM00570
Evalue2.13e-26
EggNOG OGsKOG0145@1|root,KOG0145@2759|Eukaryota
EC4.3.1.17,4.3.1.19
DescriptionRNA binding
COG categoryDU
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3009Gcaud3009Gracilaria caudata M_176_S67 malegeneNODE_117_length_47832_cov_4.546323 18613..19440 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3009.t1.stop1Gcaud3009.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_117_length_47832_cov_4.546323 18613..18615 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3009.t1.CDS1Gcaud3009.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_117_length_47832_cov_4.546323 18613..19440 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3009.t1.exon1Gcaud3009.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_117_length_47832_cov_4.546323 18613..19440 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3009.t1.start1Gcaud3009.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_117_length_47832_cov_4.546323 19438..19440 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3009.t1Gcaud3009.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_117_length_47832_cov_4.546323 18613..19440 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3009.t1 ID=Gcaud3009.t1|Name=Gcaud3009.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=276bp
MMAFLSGPPSIPLNTPGRQARSVCKCRPPVPRPARVVFSALIDEKKALSE
PDSESVTGSVSPKTDEEGLLQPRAFTDNNDAAQPPSVSAPNEPRRYISRP
RFQPDPEATYYTKCSKCSAAYELDPTVLGNGRRVACSVCGNEWFQKPERL
FTLRESEQFTDYPMDKKDEILQQNQQNQRGRNAGRRRDRQPNSRAFSVFI
GNLPFSVSQQELSEIIANIVTPKRVAIVVDADGRSRGYAFADVNSNEEVE
QLVNALHSTSVKGRTIAVRPGRRNS*
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spliced messenger RNA

>Gcaud3009.t1 ID=Gcaud3009.t1|Name=Gcaud3009.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=828bp|location=Sequence derived from alignment at NODE_117_length_47832_cov_4.546323:18613..19440- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGGCTTTTCTGAGTGGTCCCCCGTCTATTCCTCTCAACACACCGGG
CCGTCAGGCACGGTCGGTGTGCAAGTGTCGCCCGCCGGTTCCGCGACCGG
CGCGTGTGGTGTTCTCCGCGTTAATTGACGAGAAGAAGGCGCTCAGTGAA
CCCGACAGTGAGAGTGTCACCGGTTCAGTCAGCCCCAAGACAGATGAAGA
AGGACTGTTACAGCCTCGTGCATTCACAGACAATAATGATGCAGCGCAAC
CGCCATCGGTTTCCGCACCAAATGAGCCTCGCAGATATATCTCGCGCCCT
CGATTCCAGCCTGACCCAGAGGCCACTTACTACACCAAGTGTTCAAAGTG
CAGTGCTGCGTACGAATTGGACCCAACCGTGTTGGGTAACGGAAGAAGAG
TGGCCTGCAGTGTTTGTGGTAATGAGTGGTTTCAAAAGCCGGAGCGGCTG
TTCACACTGCGTGAGAGCGAGCAGTTCACCGACTATCCCATGGATAAGAA
GGACGAAATTTTGCAACAGAATCAACAGAATCAACGCGGTCGCAACGCGG
GAAGACGCCGCGATCGTCAACCAAACAGCAGGGCCTTTTCTGTGTTCATC
GGCAATCTGCCGTTCTCGGTTTCTCAACAGGAGCTGAGTGAGATTATAGC
GAACATTGTGACGCCGAAACGAGTTGCAATCGTTGTGGATGCTGACGGCA
GATCCAGGGGATACGCATTTGCGGACGTGAACTCAAACGAGGAGGTTGAG
CAGCTCGTCAACGCTCTTCACAGTACATCGGTGAAAGGCAGAACCATAGC
GGTGAGACCAGGAAGGAGAAACTCTTAG
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protein sequence of Gcaud3009.t1

>Gcaud3009.t1 ID=Gcaud3009.t1|Name=Gcaud3009.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=276bp
MMAFLSGPPSIPLNTPGRQARSVCKCRPPVPRPARVVFSALIDEKKALSE
PDSESVTGSVSPKTDEEGLLQPRAFTDNNDAAQPPSVSAPNEPRRYISRP
RFQPDPEATYYTKCSKCSAAYELDPTVLGNGRRVACSVCGNEWFQKPERL
FTLRESEQFTDYPMDKKDEILQQNQQNQRGRNAGRRRDRQPNSRAFSVFI
GNLPFSVSQQELSEIIANIVTPKRVAIVVDADGRSRGYAFADVNSNEEVE
QLVNALHSTSVKGRTIAVRPGRRNS*
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mRNA from alignment at NODE_117_length_47832_cov_4.546323:18613..19440-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3009.t1 ID=Gcaud3009.t1|Name=Gcaud3009.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=828bp|location=Sequence derived from alignment at NODE_117_length_47832_cov_4.546323:18613..19440- (Gracilaria caudata M_176_S67 male)
ATGATGGCTTTTCTGAGTGGTCCCCCGTCTATTCCTCTCAACACACCGGG
CCGTCAGGCACGGTCGGTGTGCAAGTGTCGCCCGCCGGTTCCGCGACCGG
CGCGTGTGGTGTTCTCCGCGTTAATTGACGAGAAGAAGGCGCTCAGTGAA
CCCGACAGTGAGAGTGTCACCGGTTCAGTCAGCCCCAAGACAGATGAAGA
AGGACTGTTACAGCCTCGTGCATTCACAGACAATAATGATGCAGCGCAAC
CGCCATCGGTTTCCGCACCAAATGAGCCTCGCAGATATATCTCGCGCCCT
CGATTCCAGCCTGACCCAGAGGCCACTTACTACACCAAGTGTTCAAAGTG
CAGTGCTGCGTACGAATTGGACCCAACCGTGTTGGGTAACGGAAGAAGAG
TGGCCTGCAGTGTTTGTGGTAATGAGTGGTTTCAAAAGCCGGAGCGGCTG
TTCACACTGCGTGAGAGCGAGCAGTTCACCGACTATCCCATGGATAAGAA
GGACGAAATTTTGCAACAGAATCAACAGAATCAACGCGGTCGCAACGCGG
GAAGACGCCGCGATCGTCAACCAAACAGCAGGGCCTTTTCTGTGTTCATC
GGCAATCTGCCGTTCTCGGTTTCTCAACAGGAGCTGAGTGAGATTATAGC
GAACATTGTGACGCCGAAACGAGTTGCAATCGTTGTGGATGCTGACGGCA
GATCCAGGGGATACGCATTTGCGGACGTGAACTCAAACGAGGAGGTTGAG
CAGCTCGTCAACGCTCTTCACAGTACATCGGTGAAAGGCAGAACCATAGC
GGTGAGACCAGGAAGGAGAAACTCTTAG
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Coding sequence (CDS) from alignment at NODE_117_length_47832_cov_4.546323:18613..19440-

>Gcaud3009.t1 ID=Gcaud3009.t1|Name=Gcaud3009.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=828bp|location=Sequence derived from alignment at NODE_117_length_47832_cov_4.546323:18613..19440- (Gracilaria caudata M_176_S67 male)
ATGATGGCTTTTCTGAGTGGTCCCCCGTCTATTCCTCTCAACACACCGGG
CCGTCAGGCACGGTCGGTGTGCAAGTGTCGCCCGCCGGTTCCGCGACCGG
CGCGTGTGGTGTTCTCCGCGTTAATTGACGAGAAGAAGGCGCTCAGTGAA
CCCGACAGTGAGAGTGTCACCGGTTCAGTCAGCCCCAAGACAGATGAAGA
AGGACTGTTACAGCCTCGTGCATTCACAGACAATAATGATGCAGCGCAAC
CGCCATCGGTTTCCGCACCAAATGAGCCTCGCAGATATATCTCGCGCCCT
CGATTCCAGCCTGACCCAGAGGCCACTTACTACACCAAGTGTTCAAAGTG
CAGTGCTGCGTACGAATTGGACCCAACCGTGTTGGGTAACGGAAGAAGAG
TGGCCTGCAGTGTTTGTGGTAATGAGTGGTTTCAAAAGCCGGAGCGGCTG
TTCACACTGCGTGAGAGCGAGCAGTTCACCGACTATCCCATGGATAAGAA
GGACGAAATTTTGCAACAGAATCAACAGAATCAACGCGGTCGCAACGCGG
GAAGACGCCGCGATCGTCAACCAAACAGCAGGGCCTTTTCTGTGTTCATC
GGCAATCTGCCGTTCTCGGTTTCTCAACAGGAGCTGAGTGAGATTATAGC
GAACATTGTGACGCCGAAACGAGTTGCAATCGTTGTGGATGCTGACGGCA
GATCCAGGGGATACGCATTTGCGGACGTGAACTCAAACGAGGAGGTTGAG
CAGCTCGTCAACGCTCTTCACAGTACATCGGTGAAAGGCAGAACCATAGC
GGTGAGACCAGGAAGGAGAAACTCTTAG
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