Gcaud176.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud176.t1
Unique NameGcaud176.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length171
Homology
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BLAST of Gcaud176.t1 vs. uniprot
Match: A0A2V3IHU7_9FLOR (F-box domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IHU7_9FLOR)

HSP 1 Score: 166 bits (421), Expect = 2.180e-48
Identity = 89/181 (49.17%), Postives = 115/181 (63.54%), Query Frame = 0 
Query:    1 MPISRTTGPAFHSFVSCDQR-RGVRLWVCVTSADDCRLRNGALRVRLVVQNIESEAIRLQPQRIEVQLLDGAALQVRPQLASS-SLSIAAINFERWSSTPKEHVLM---------LDEFAVVCVDIRIPDTVFEVDVLERLKQICIPIETDTVTSVGATFVDKHVWDAYELLPGGWWVRRA 170
            MPISRTTGP F  F   D     +++W+CV+SADDCRLR+GALR+RLVVQNI    I LQP +  +   +G  +  +P   S+ +L+I  I  E W S    H L+         LDEFAV+ +D+R+ DTVFEVDVLERL+ + IP+ T       A F+D  +W+AYE LPGGWWVRRA
Sbjct:   88 MPISRTTGPTFTVFAKGDPFVPQIQMWICVSSADDCRLRDGALRLRLVVQNISEPCILLQPSQTHIAFTEGGCICPQPPSDSARTLTIVQIACESWHSNEPSHRLVDTDKPLFLELDEFAVIVMDLRLADTVFEVDVLERLEHVRIPVITHCFQEAVAPFLDGVIWEAYEFLPGGWWVRRA 268
The following BLAST results are available for this feature:
BLAST of Gcaud176.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IHU7_9FLOR2.180e-4849.17F-box domain-containing protein n=1 Tax=Gracilario... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..17
score: 5.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_733_length_18975_cov_3.965368contigNODE_733_length_18975_cov_3.965368:11411..11923 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud176.t1Gcaud176.t1Gracilaria caudata M_176_S67 malemRNANODE_733_length_18975_cov_3.965368 11411..11923 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud176.t1 ID=Gcaud176.t1|Name=Gcaud176.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=171bp
MPISRTTGPAFHSFVSCDQRRGVRLWVCVTSADDCRLRNGALRVRLVVQN
IESEAIRLQPQRIEVQLLDGAALQVRPQLASSSLSIAAINFERWSSTPKE
HVLMLDEFAVVCVDIRIPDTVFEVDVLERLKQICIPIETDTVTSVGATFV
DKHVWDAYELLPGGWWVRRA*
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