Gcaud178.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud178.t1
Unique Name	Gcaud178.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	366

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_733_length_18975_cov_3.965368	contig	NODE_733_length_18975_cov_3.965368:15588..16685 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	398578.Daci_5026
Preferred name	rluD
PFAMs	PseudoU_synth_2,S4
Max annot lvl	28216\|Betaproteobacteria
KEGG ko	ko:K06180
Evalue	2.9e-70
EggNOG OGs	COG0564@1\|root,COG0564@2\|Bacteria,1MUBN@1224\|Proteobacteria,2VIFF@28216\|Betaproteobacteria,4AB2B@80864\|Comamonadaceae
EC	5.4.99.23
Description	Responsible for synthesis of pseudouridine from uracil
COG category	J
BRITE	ko00000,ko01000,ko03009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud178	Gcaud178	Gracilaria caudata M_176_S67 male	gene	NODE_733_length_18975_cov_3.965368 15588..16685 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud178.t1.stop1	Gcaud178.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_733_length_18975_cov_3.965368 15588..15590 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud178.t1.CDS1	Gcaud178.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_733_length_18975_cov_3.965368 15588..16685 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud178.t1.exon1	Gcaud178.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_733_length_18975_cov_3.965368 15588..16685 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud178.t1.start1	Gcaud178.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_733_length_18975_cov_3.965368 16683..16685 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud178.t1	Gcaud178.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_733_length_18975_cov_3.965368 15588..16685 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_733_length_18975_cov_3.965368:15588..16685-
coding sequence from alignment at NODE_733_length_18975_cov_3.965368:15588..16685-

mRNA sequence

>Gcaud178.t1 ID=Gcaud178.t1|Name=Gcaud178.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=366bp
MRAPRSAFLTATALRAPSLSTQPAHRRLCTAPHALQQPPAHSSAHTFQIS
AAEAGIRVDKLLASRFSSRSRSYLQSLIRDGHVLIDGLSPVSKSQRVTCG
ETVAVRLVPTYSDLPVTAEHVALQVLYEDEHLAFINKPAGMVTHPAPGNW
QGTLVNALAARYESIREMGCQRAGIVHRLDKGTSGIMVIAKTQLAHDKLG
ALFAARAVQKEYIAITVNDACAEGCVSTTIEQPIGRHPTNRLKMSVLPLS
QGGRSAKTIVQTIAHDAQGFLHLARVRIETGRTHQIRVHLRHARAPVLGD
ELYGATDVNARFGAGVNRAMLHSWRLQFTHPLTNERLCKSAPLPSDMHTL
IARRMGADALADVHH*

spliced messenger RNA

>Gcaud178.t1 ID=Gcaud178.t1|Name=Gcaud178.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1098bp|location=Sequence derived from alignment at NODE_733_length_18975_cov_3.965368:15588..16685- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCGCCCCACGCAGCGCGTTCCTAACTGCGACCGCGCTGCGAGCGCC
CTCGCTCAGCACACAGCCCGCCCACCGCCGCCTCTGCACCGCTCCGCACG
CGCTACAGCAGCCGCCCGCGCACTCGTCCGCACACACGTTCCAGATCAGC
GCCGCCGAGGCCGGCATCCGCGTGGACAAGCTTCTCGCGTCGCGCTTCAG
TTCACGCTCCCGCAGCTATCTACAATCGCTCATCCGCGACGGCCACGTGC
TCATCGACGGGCTCTCGCCCGTGAGCAAGTCGCAACGCGTCACATGCGGC
GAGACGGTGGCCGTGCGTCTGGTGCCGACGTACAGCGATTTGCCGGTGAC
GGCCGAACATGTGGCGTTGCAGGTGCTTTACGAGGATGAGCATTTGGCGT
TTATCAACAAACCGGCCGGAATGGTGACGCATCCCGCGCCGGGCAATTGG
CAAGGCACACTAGTAAACGCACTTGCCGCGCGTTACGAAAGCATTCGAGA
GATGGGATGTCAACGCGCGGGAATTGTACATCGTCTTGACAAGGGCACTT
CCGGAATCATGGTGATCGCAAAGACGCAACTCGCACACGACAAACTGGGA
GCTCTATTCGCGGCGCGCGCGGTACAAAAGGAATACATAGCCATCACCGT
GAACGACGCATGCGCAGAAGGCTGCGTATCCACCACCATTGAGCAACCCA
TCGGTCGTCATCCCACAAACCGTCTCAAAATGAGCGTCTTGCCGCTTTCG
CAGGGCGGTCGTAGCGCTAAAACCATTGTTCAAACAATTGCGCACGATGC
GCAGGGCTTTCTTCATCTGGCGCGCGTGCGCATTGAAACAGGACGCACGC
ATCAAATCCGCGTACATCTTCGACACGCACGCGCGCCCGTTCTGGGTGAT
GAGCTTTACGGTGCGACGGATGTGAACGCACGGTTCGGCGCGGGTGTGAA
TCGCGCAATGCTTCATTCGTGGCGATTACAATTCACGCATCCGCTCACAA
ACGAACGATTGTGCAAAAGCGCACCTTTACCGAGTGACATGCACACGCTC
ATTGCGCGTCGCATGGGCGCCGACGCGCTTGCGGACGTGCATCACTGA

protein sequence of Gcaud178.t1

>Gcaud178.t1 ID=Gcaud178.t1|Name=Gcaud178.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=366bp
MRAPRSAFLTATALRAPSLSTQPAHRRLCTAPHALQQPPAHSSAHTFQIS
AAEAGIRVDKLLASRFSSRSRSYLQSLIRDGHVLIDGLSPVSKSQRVTCG
ETVAVRLVPTYSDLPVTAEHVALQVLYEDEHLAFINKPAGMVTHPAPGNW
QGTLVNALAARYESIREMGCQRAGIVHRLDKGTSGIMVIAKTQLAHDKLG
ALFAARAVQKEYIAITVNDACAEGCVSTTIEQPIGRHPTNRLKMSVLPLS
QGGRSAKTIVQTIAHDAQGFLHLARVRIETGRTHQIRVHLRHARAPVLGD
ELYGATDVNARFGAGVNRAMLHSWRLQFTHPLTNERLCKSAPLPSDMHTL
IARRMGADALADVHH*

mRNA from alignment at NODE_733_length_18975_cov_3.965368:15588..16685-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud178.t1 ID=Gcaud178.t1|Name=Gcaud178.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1098bp|location=Sequence derived from alignment at NODE_733_length_18975_cov_3.965368:15588..16685- (Gracilaria caudata M_176_S67 male)
ATGCGCGCCCCACGCAGCGCGTTCCTAACTGCGACCGCGCTGCGAGCGCC
CTCGCTCAGCACACAGCCCGCCCACCGCCGCCTCTGCACCGCTCCGCACG
CGCTACAGCAGCCGCCCGCGCACTCGTCCGCACACACGTTCCAGATCAGC
GCCGCCGAGGCCGGCATCCGCGTGGACAAGCTTCTCGCGTCGCGCTTCAG
TTCACGCTCCCGCAGCTATCTACAATCGCTCATCCGCGACGGCCACGTGC
TCATCGACGGGCTCTCGCCCGTGAGCAAGTCGCAACGCGTCACATGCGGC
GAGACGGTGGCCGTGCGTCTGGTGCCGACGTACAGCGATTTGCCGGTGAC
GGCCGAACATGTGGCGTTGCAGGTGCTTTACGAGGATGAGCATTTGGCGT
TTATCAACAAACCGGCCGGAATGGTGACGCATCCCGCGCCGGGCAATTGG
CAAGGCACACTAGTAAACGCACTTGCCGCGCGTTACGAAAGCATTCGAGA
GATGGGATGTCAACGCGCGGGAATTGTACATCGTCTTGACAAGGGCACTT
CCGGAATCATGGTGATCGCAAAGACGCAACTCGCACACGACAAACTGGGA
GCTCTATTCGCGGCGCGCGCGGTACAAAAGGAATACATAGCCATCACCGT
GAACGACGCATGCGCAGAAGGCTGCGTATCCACCACCATTGAGCAACCCA
TCGGTCGTCATCCCACAAACCGTCTCAAAATGAGCGTCTTGCCGCTTTCG
CAGGGCGGTCGTAGCGCTAAAACCATTGTTCAAACAATTGCGCACGATGC
GCAGGGCTTTCTTCATCTGGCGCGCGTGCGCATTGAAACAGGACGCACGC
ATCAAATCCGCGTACATCTTCGACACGCACGCGCGCCCGTTCTGGGTGAT
GAGCTTTACGGTGCGACGGATGTGAACGCACGGTTCGGCGCGGGTGTGAA
TCGCGCAATGCTTCATTCGTGGCGATTACAATTCACGCATCCGCTCACAA
ACGAACGATTGTGCAAAAGCGCACCTTTACCGAGTGACATGCACACGCTC
ATTGCGCGTCGCATGGGCGCCGACGCGCTTGCGGACGTGCATCACTGA

Coding sequence (CDS) from alignment at NODE_733_length_18975_cov_3.965368:15588..16685-

>Gcaud178.t1 ID=Gcaud178.t1|Name=Gcaud178.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1098bp|location=Sequence derived from alignment at NODE_733_length_18975_cov_3.965368:15588..16685- (Gracilaria caudata M_176_S67 male)
ATGCGCGCCCCACGCAGCGCGTTCCTAACTGCGACCGCGCTGCGAGCGCC
CTCGCTCAGCACACAGCCCGCCCACCGCCGCCTCTGCACCGCTCCGCACG
CGCTACAGCAGCCGCCCGCGCACTCGTCCGCACACACGTTCCAGATCAGC
GCCGCCGAGGCCGGCATCCGCGTGGACAAGCTTCTCGCGTCGCGCTTCAG
TTCACGCTCCCGCAGCTATCTACAATCGCTCATCCGCGACGGCCACGTGC
TCATCGACGGGCTCTCGCCCGTGAGCAAGTCGCAACGCGTCACATGCGGC
GAGACGGTGGCCGTGCGTCTGGTGCCGACGTACAGCGATTTGCCGGTGAC
GGCCGAACATGTGGCGTTGCAGGTGCTTTACGAGGATGAGCATTTGGCGT
TTATCAACAAACCGGCCGGAATGGTGACGCATCCCGCGCCGGGCAATTGG
CAAGGCACACTAGTAAACGCACTTGCCGCGCGTTACGAAAGCATTCGAGA
GATGGGATGTCAACGCGCGGGAATTGTACATCGTCTTGACAAGGGCACTT
CCGGAATCATGGTGATCGCAAAGACGCAACTCGCACACGACAAACTGGGA
GCTCTATTCGCGGCGCGCGCGGTACAAAAGGAATACATAGCCATCACCGT
GAACGACGCATGCGCAGAAGGCTGCGTATCCACCACCATTGAGCAACCCA
TCGGTCGTCATCCCACAAACCGTCTCAAAATGAGCGTCTTGCCGCTTTCG
CAGGGCGGTCGTAGCGCTAAAACCATTGTTCAAACAATTGCGCACGATGC
GCAGGGCTTTCTTCATCTGGCGCGCGTGCGCATTGAAACAGGACGCACGC
ATCAAATCCGCGTACATCTTCGACACGCACGCGCGCCCGTTCTGGGTGAT
GAGCTTTACGGTGCGACGGATGTGAACGCACGGTTCGGCGCGGGTGTGAA
TCGCGCAATGCTTCATTCGTGGCGATTACAATTCACGCATCCGCTCACAA
ACGAACGATTGTGCAAAAGCGCACCTTTACCGAGTGACATGCACACGCTC
ATTGCGCGTCGCATGGGCGCCGACGCGCTTGCGGACGTGCATCACTGA