Gcaud7728.t2 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7728.t2
Unique Name	Gcaud7728.t2
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	437

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_729_length_19030_cov_3.966471	contig	NODE_729_length_19030_cov_3.966471:1929..3239 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7728	Gcaud7728	Gracilaria caudata M_176_S67 male	gene	NODE_729_length_19030_cov_3.966471 1929..3512 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7728.t2.stop1	Gcaud7728.t2.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_729_length_19030_cov_3.966471 1929..1931 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7728.t2.CDS1	Gcaud7728.t2.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_729_length_19030_cov_3.966471 1929..3239 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7728.t2.exon1	Gcaud7728.t2.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_729_length_19030_cov_3.966471 1929..3239 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7728.t2.start1	Gcaud7728.t2.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_729_length_19030_cov_3.966471 3237..3239 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7728.t2	Gcaud7728.t2	Gracilaria caudata M_176_S67 male	polypeptide	NODE_729_length_19030_cov_3.966471 1929..3239 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_729_length_19030_cov_3.966471:1929..3239-
coding sequence from alignment at NODE_729_length_19030_cov_3.966471:1929..3239-

mRNA sequence

>Gcaud7728.t2 ID=Gcaud7728.t2|Name=Gcaud7728.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=437bp
MANHTAMLTSSVHQIIEYAQAEVISSQLVPKCHNLTHSVQTLFTNLNYTR
LSADADHAFTKYLSIANQTGFDSGVQYIELLGNFSRTPVLMEARRNLSNI
LNNSLHSAQFTDLIRNGESYNNESLIFDELKSNLTLLFDRLSFENTSSEG
PFVQIIAIVKTTWPAVEERFNALRLSLGSRTPQIVSSSTISGEAKRTLDE
ILKVAAGQHSLRDAFRSLLLTPTSETKEAYQMCDAYDFLHVDPRWVVALL
TIMLISVPFMYIGRTLLQSLIQWHLSKTYRHVANEAQREIDGYILTGGVT
GIGFGAAQATIQALLWAFLPFSAQAKLVLLVHCAMLMVIHCVTQMAINGA
EGRRDLMFRWKGRKAWWILTTAVHVVTAMWWTAQYLSALVCALLRVDTVL
GLLLVADAVVLAIYAWWGRSICRRARSDEACHSRRE*

spliced messenger RNA

>Gcaud7728.t2 ID=Gcaud7728.t2|Name=Gcaud7728.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1311bp|location=Sequence derived from alignment at NODE_729_length_19030_cov_3.966471:1929..3239- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCAATCACACTGCCATGCTCACTTCTTCCGTTCATCAAATCATTGA
GTACGCGCAGGCTGAAGTGATTTCGTCGCAACTGGTGCCCAAATGCCACA
ATCTCACGCACTCCGTTCAGACGCTTTTCACAAACCTCAACTACACGCGT
CTTTCCGCGGATGCCGACCACGCGTTCACAAAATATCTGTCCATTGCGAA
TCAAACAGGGTTTGATTCGGGTGTGCAATACATTGAGCTGTTAGGCAACT
TTTCGCGCACGCCGGTGCTGATGGAAGCGAGGCGCAACTTGTCCAACATA
CTCAACAACTCGCTGCACTCTGCGCAATTCACCGATTTGATCAGAAACGG
CGAGTCGTACAACAACGAGAGTTTGATTTTCGATGAGCTCAAGTCAAACT
TGACCTTGTTGTTTGACCGCTTGTCGTTTGAGAATACCAGCTCTGAAGGG
CCGTTCGTGCAAATAATTGCCATTGTCAAAACCACGTGGCCTGCTGTGGA
AGAACGATTCAATGCTCTGCGCTTGAGTCTCGGCTCTAGAACGCCACAAA
TCGTTTCAAGTTCTACCATCTCTGGTGAGGCCAAACGCACCTTGGATGAG
ATTCTGAAGGTGGCAGCCGGTCAGCATTCCCTGCGCGATGCGTTTCGCTC
GTTGCTTCTCACTCCAACGTCAGAAACAAAGGAAGCGTATCAGATGTGTG
ACGCGTACGACTTTCTGCATGTGGACCCTCGATGGGTGGTAGCTTTGCTC
ACAATCATGCTCATATCCGTTCCATTCATGTACATCGGTCGTACGCTGCT
TCAATCATTGATTCAATGGCATCTGTCCAAAACGTACCGCCACGTTGCGA
ATGAAGCGCAGCGTGAAATAGACGGCTATATTCTCACAGGCGGCGTGACC
GGCATCGGATTCGGTGCTGCGCAAGCCACCATCCAAGCGCTGCTGTGGGC
CTTTCTTCCGTTCTCTGCACAAGCAAAACTTGTGTTACTGGTACATTGCG
CCATGTTGATGGTCATCCATTGCGTGACTCAGATGGCAATCAATGGTGCG
GAAGGACGACGAGATTTGATGTTTCGCTGGAAGGGACGCAAGGCATGGTG
GATCTTAACCACCGCTGTGCATGTGGTGACTGCAATGTGGTGGACGGCGC
AATATTTGAGTGCTCTGGTTTGTGCCTTGCTGCGGGTTGACACTGTTTTG
GGGTTGCTGTTGGTAGCTGACGCGGTGGTGCTTGCAATATATGCTTGGTG
GGGGAGGAGCATCTGTCGCCGCGCCCGAAGCGATGAAGCGTGTCACTCTA
GACGCGAGTAG

protein sequence of Gcaud7728.t2

>Gcaud7728.t2 ID=Gcaud7728.t2|Name=Gcaud7728.t2|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=437bp
MANHTAMLTSSVHQIIEYAQAEVISSQLVPKCHNLTHSVQTLFTNLNYTR
LSADADHAFTKYLSIANQTGFDSGVQYIELLGNFSRTPVLMEARRNLSNI
LNNSLHSAQFTDLIRNGESYNNESLIFDELKSNLTLLFDRLSFENTSSEG
PFVQIIAIVKTTWPAVEERFNALRLSLGSRTPQIVSSSTISGEAKRTLDE
ILKVAAGQHSLRDAFRSLLLTPTSETKEAYQMCDAYDFLHVDPRWVVALL
TIMLISVPFMYIGRTLLQSLIQWHLSKTYRHVANEAQREIDGYILTGGVT
GIGFGAAQATIQALLWAFLPFSAQAKLVLLVHCAMLMVIHCVTQMAINGA
EGRRDLMFRWKGRKAWWILTTAVHVVTAMWWTAQYLSALVCALLRVDTVL
GLLLVADAVVLAIYAWWGRSICRRARSDEACHSRRE*

mRNA from alignment at NODE_729_length_19030_cov_3.966471:1929..3239-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7728.t2 ID=Gcaud7728.t2|Name=Gcaud7728.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1311bp|location=Sequence derived from alignment at NODE_729_length_19030_cov_3.966471:1929..3239- (Gracilaria caudata M_176_S67 male)
ATGGCCAATCACACTGCCATGCTCACTTCTTCCGTTCATCAAATCATTGA
GTACGCGCAGGCTGAAGTGATTTCGTCGCAACTGGTGCCCAAATGCCACA
ATCTCACGCACTCCGTTCAGACGCTTTTCACAAACCTCAACTACACGCGT
CTTTCCGCGGATGCCGACCACGCGTTCACAAAATATCTGTCCATTGCGAA
TCAAACAGGGTTTGATTCGGGTGTGCAATACATTGAGCTGTTAGGCAACT
TTTCGCGCACGCCGGTGCTGATGGAAGCGAGGCGCAACTTGTCCAACATA
CTCAACAACTCGCTGCACTCTGCGCAATTCACCGATTTGATCAGAAACGG
CGAGTCGTACAACAACGAGAGTTTGATTTTCGATGAGCTCAAGTCAAACT
TGACCTTGTTGTTTGACCGCTTGTCGTTTGAGAATACCAGCTCTGAAGGG
CCGTTCGTGCAAATAATTGCCATTGTCAAAACCACGTGGCCTGCTGTGGA
AGAACGATTCAATGCTCTGCGCTTGAGTCTCGGCTCTAGAACGCCACAAA
TCGTTTCAAGTTCTACCATCTCTGGTGAGGCCAAACGCACCTTGGATGAG
ATTCTGAAGGTGGCAGCCGGTCAGCATTCCCTGCGCGATGCGTTTCGCTC
GTTGCTTCTCACTCCAACGTCAGAAACAAAGGAAGCGTATCAGATGTGTG
ACGCGTACGACTTTCTGCATGTGGACCCTCGATGGGTGGTAGCTTTGCTC
ACAATCATGCTCATATCCGTTCCATTCATGTACATCGGTCGTACGCTGCT
TCAATCATTGATTCAATGGCATCTGTCCAAAACGTACCGCCACGTTGCGA
ATGAAGCGCAGCGTGAAATAGACGGCTATATTCTCACAGGCGGCGTGACC
GGCATCGGATTCGGTGCTGCGCAAGCCACCATCCAAGCGCTGCTGTGGGC
CTTTCTTCCGTTCTCTGCACAAGCAAAACTTGTGTTACTGGTACATTGCG
CCATGTTGATGGTCATCCATTGCGTGACTCAGATGGCAATCAATGGTGCG
GAAGGACGACGAGATTTGATGTTTCGCTGGAAGGGACGCAAGGCATGGTG
GATCTTAACCACCGCTGTGCATGTGGTGACTGCAATGTGGTGGACGGCGC
AATATTTGAGTGCTCTGGTTTGTGCCTTGCTGCGGGTTGACACTGTTTTG
GGGTTGCTGTTGGTAGCTGACGCGGTGGTGCTTGCAATATATGCTTGGTG
GGGGAGGAGCATCTGTCGCCGCGCCCGAAGCGATGAAGCGTGTCACTCTA
GACGCGAGTAG

Coding sequence (CDS) from alignment at NODE_729_length_19030_cov_3.966471:1929..3239-

>Gcaud7728.t2 ID=Gcaud7728.t2|Name=Gcaud7728.t2|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1311bp|location=Sequence derived from alignment at NODE_729_length_19030_cov_3.966471:1929..3239- (Gracilaria caudata M_176_S67 male)
ATGGCCAATCACACTGCCATGCTCACTTCTTCCGTTCATCAAATCATTGA
GTACGCGCAGGCTGAAGTGATTTCGTCGCAACTGGTGCCCAAATGCCACA
ATCTCACGCACTCCGTTCAGACGCTTTTCACAAACCTCAACTACACGCGT
CTTTCCGCGGATGCCGACCACGCGTTCACAAAATATCTGTCCATTGCGAA
TCAAACAGGGTTTGATTCGGGTGTGCAATACATTGAGCTGTTAGGCAACT
TTTCGCGCACGCCGGTGCTGATGGAAGCGAGGCGCAACTTGTCCAACATA
CTCAACAACTCGCTGCACTCTGCGCAATTCACCGATTTGATCAGAAACGG
CGAGTCGTACAACAACGAGAGTTTGATTTTCGATGAGCTCAAGTCAAACT
TGACCTTGTTGTTTGACCGCTTGTCGTTTGAGAATACCAGCTCTGAAGGG
CCGTTCGTGCAAATAATTGCCATTGTCAAAACCACGTGGCCTGCTGTGGA
AGAACGATTCAATGCTCTGCGCTTGAGTCTCGGCTCTAGAACGCCACAAA
TCGTTTCAAGTTCTACCATCTCTGGTGAGGCCAAACGCACCTTGGATGAG
ATTCTGAAGGTGGCAGCCGGTCAGCATTCCCTGCGCGATGCGTTTCGCTC
GTTGCTTCTCACTCCAACGTCAGAAACAAAGGAAGCGTATCAGATGTGTG
ACGCGTACGACTTTCTGCATGTGGACCCTCGATGGGTGGTAGCTTTGCTC
ACAATCATGCTCATATCCGTTCCATTCATGTACATCGGTCGTACGCTGCT
TCAATCATTGATTCAATGGCATCTGTCCAAAACGTACCGCCACGTTGCGA
ATGAAGCGCAGCGTGAAATAGACGGCTATATTCTCACAGGCGGCGTGACC
GGCATCGGATTCGGTGCTGCGCAAGCCACCATCCAAGCGCTGCTGTGGGC
CTTTCTTCCGTTCTCTGCACAAGCAAAACTTGTGTTACTGGTACATTGCG
CCATGTTGATGGTCATCCATTGCGTGACTCAGATGGCAATCAATGGTGCG
GAAGGACGACGAGATTTGATGTTTCGCTGGAAGGGACGCAAGGCATGGTG
GATCTTAACCACCGCTGTGCATGTGGTGACTGCAATGTGGTGGACGGCGC
AATATTTGAGTGCTCTGGTTTGTGCCTTGCTGCGGGTTGACACTGTTTTG
GGGTTGCTGTTGGTAGCTGACGCGGTGGTGCTTGCAATATATGCTTGGTG
GGGGAGGAGCATCTGTCGCCGCGCCCGAAGCGATGAAGCGTGTCACTCTA
GACGCGAGTAG