Gcaud7728.t2 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud7728.t2
Unique NameGcaud7728.t2
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length437
Homology
BLAST of Gcaud7728.t2 vs. uniprot
Match: A0A2V3IFV3_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IFV3_9FLOR)

HSP 1 Score: 166 bits (421), Expect = 1.620e-42
Identity = 123/441 (27.89%), Postives = 207/441 (46.94%), Query Frame = 0
Query:    2 ANHTAMLTSSVHQIIEYAQAEVISSQLVPKCHNLTHSVQTLFTNLNYTRLSADADHAFTKYLSIANQTGF-DSGVQYIE-LLGNFSRTPVLMEARRNLSNILNNSLHSAQFTDLIRNGESYNNESLIFDELKSNLTLLFDRLSFENTSSEGPFVQIIAIVKTTWPAVEERFNALRLSLGSRTPQIVSSSTISGEAKRTLDEILKVAAGQHSLRDAFRSLLLTPTSETKEAYQMCDAYDFLHVDPRWVVALLTIML----ISVPFMYIGRTLLQSLIQWHLSKTYRHVANEAQREIDGYILTGGVTGIGFGAAQATIQALLWAFLPFSAQAKLVLLVHCAMLMVIHCVTQMAINGAEGRRDLMFRWKGRKAWWILTTAVHVVTAMWWTAQYLSALVCALLRVDTVLGLLLVADAVVLAIYAWWGRSICRRARSDEACHSRRE 436
            AN    L S+  +  EY  + V   +  P    +  ++  +F+  +   L A +D A    LS   QT + D G + I   L N +  PV+ E   N+S ++  +L + + +DL+ N +        F    + L+ L + LS +   + G   Q  + +      V+E    L+ SL   +  I+ + T+S      LDEIL+V  G+ S  DA  S     + E     +    +    V+P WVV ++ +++    I  P + + R  LQ  +QWH++K Y     + +R + G++ TGG+ G  FG  QA    +  AFLP S Q +L L+ H  +L++ H V  ++I+ AEGR+D+M  W+G + WWI  T +  V  +WW  Q    L    + +D  + L ++ D  V     W  + +   AR +E  H +R+
Sbjct:   93 ANRFFSLMSNWQEAGEYIGSSVFPLKESPLWSTVATNLTNMFSKADSRLLIALSDQAEVFLLS---QTKWQDEGTELIRNSLMNLTSQPVVQEFGANVSMVITKALDTVRLSDLLPNADLSPQSQYKFLTFTNALSQLINSLSADQLLTNG--TQPKSFMSAA-KGVKEAAKDLQESLLLASSDILGNKTLSSGGNAALDEILRVMDGRSSFWDAANSSW--QSMEFPSTSKASGLFSLSFVEPMWVVRIIAVLVFLCGIVTPLLLMARARLQLWLQWHVAKYYVKEVEKRERNVSGWVTTGGIVGAAFGTTQACYAGIALAFLPVSTQGRLALVNHTCVLVLAHGVGMVSISSAEGRKDVMENWEGGRKWWISVTGLQAVLKIWWDFQLGMILAADFVGLDVTVTLFMITDIFVSLALRWCLQRVVVNARKEEETHLKRD 525          
BLAST of Gcaud7728.t2 vs. uniprot
Match: A0A2V3IFV2_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IFV2_9FLOR)

HSP 1 Score: 122 bits (305), Expect = 1.550e-26
Identity = 106/436 (24.31%), Postives = 197/436 (45.18%), Query Frame = 0
Query:    8 LTSSVHQIIEYAQAEVISSQLVPKCHNLTHSVQTLFTNLNYTRLSADADHAFTKYLSIANQTGFDSGVQYIELLGNFSRTPVLMEARRNLSNILNNSLHSAQFTDLIRNGESYNNESLIFDELKSNLTLLFDRLS---FENTSSEGPFVQIIAIVKTTWPAVEERFNALRLSLGSRTPQIVSSSTISGEAKRTLDEILKVAAGQHSLRDAFRSLLLTPTSETKEAYQMCDAYDFLHVDPRWV--VALLTIML--ISVPFMYIGRTLLQSLIQWHLSKTYRHVANEAQREIDGYILTGGVTGIGFGAAQATIQALLWAFLPFSAQAKLVLLVHCAMLMVIHCVTQMAINGAEGRRDLMFRWKGRKAWWILTTAVHVVTAMWWTAQYLSALVCALLRVDTVLGLLLVADAVVLAIYAWWGRSICRRARSDEACHSRRE 436
            L S   ++ EY     IS +     ++L  ++  + T      L   A   +  Y     Q+  +    +  L+ N +  P+L E   N +  +  +L + + +DL    +        F    + L+   +  S   F   S++   ++  + V   W A +    A + SL   T  I+   T+S  A   LD IL+V  G+ ++ DA +S L + T+     +++            W+  +AL+ ++L  +S+P M + ++LLQ  +QW L K Y+   ++A+R ++G+ILTG +TG+ +   Q   +++ WA    S    L    H  +L  IH    +AI  AEGR+D++  W+ R+ WW+    +     +WW    ++ +   +L  + +  L + AD VV        R + +RA+ DE  +S+ +
Sbjct:   99 LVSDYKEVGEYLGRSTISPRGNSLLNSLMENLTRILTEDGGIHLIKVATQKWQHYQDALTQSNEE---HFSNLINNLTSLPLLSEMGNNATAAITYTLEAVRLSDLFPRAQLSPRSQQKFLAFTTALSQSINSSSAHLFALNSTKPERLE--SSVHNVWQAAK----AFQDSLQLETTDILGDQTLSPGATVVLDRILRVMDGRSTVGDALKSSLESVTNGGSTLFRIPSLLS------TWMLQIALMLVVLWVVSIPLMMMTQSLLQLWLQWQLVKKYKEEVSDAERNMEGWILTGWITGVMYATVQTIWRSVEWATSNSSFLGLLAFAYHFQVLHEIHGTAMVAIASAEGRKDVLNGWRARRTWWMAAVILTSSLKVWWDFHLVTMIGFLVLGNNGMAFLFIAADGVVSLALQIGVRRMVKRAKKDENEYSKHD 519          
The following BLAST results are available for this feature:
BLAST of Gcaud7728.t2 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IFV3_9FLOR1.620e-4227.89Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IFV2_9FLOR1.550e-2624.31Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 432..436
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 387..397
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 347..365
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 366..386
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 272..291
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 292..319
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 418..436
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..244
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 398..417
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 320..324
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 325..346
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 245..271
NoneNo IPR availableTMHMMTMhelixcoord: 365..384
NoneNo IPR availableTMHMMTMhelixcoord: 330..352
NoneNo IPR availableTMHMMTMhelixcoord: 245..267
NoneNo IPR availableTMHMMTMhelixcoord: 293..315
NoneNo IPR availableTMHMMTMhelixcoord: 399..418

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_729_length_19030_cov_3.966471contigNODE_729_length_19030_cov_3.966471:1929..3239 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7728.t2Gcaud7728.t2Gracilaria caudata M_176_S67 malemRNANODE_729_length_19030_cov_3.966471 1929..3239 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud7728.t2 ID=Gcaud7728.t2|Name=Gcaud7728.t2|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=437bp
MANHTAMLTSSVHQIIEYAQAEVISSQLVPKCHNLTHSVQTLFTNLNYTR
LSADADHAFTKYLSIANQTGFDSGVQYIELLGNFSRTPVLMEARRNLSNI
LNNSLHSAQFTDLIRNGESYNNESLIFDELKSNLTLLFDRLSFENTSSEG
PFVQIIAIVKTTWPAVEERFNALRLSLGSRTPQIVSSSTISGEAKRTLDE
ILKVAAGQHSLRDAFRSLLLTPTSETKEAYQMCDAYDFLHVDPRWVVALL
TIMLISVPFMYIGRTLLQSLIQWHLSKTYRHVANEAQREIDGYILTGGVT
GIGFGAAQATIQALLWAFLPFSAQAKLVLLVHCAMLMVIHCVTQMAINGA
EGRRDLMFRWKGRKAWWILTTAVHVVTAMWWTAQYLSALVCALLRVDTVL
GLLLVADAVVLAIYAWWGRSICRRARSDEACHSRRE*
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