Gcaud7729.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud7729.t1
Unique NameGcaud7729.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length253
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_729_length_19030_cov_3.966471contigNODE_729_length_19030_cov_3.966471:5250..6008 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog195253.Syn6312_3407
PFAMsDAGK_cat
Max annot lvl1117|Cyanobacteria
Evalue3.85e-28
EggNOG OGsCOG1597@1|root,COG1803@1|root,COG1597@2|Bacteria,COG1803@2|Bacteria,1G25B@1117|Cyanobacteria,1H02Z@1129|Synechococcus
DescriptionCOG1803 Methylglyoxal synthase
COG categoryI
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7729Gcaud7729Gracilaria caudata M_176_S67 malegeneNODE_729_length_19030_cov_3.966471 5250..6008 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7729.t1.stop1Gcaud7729.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_729_length_19030_cov_3.966471 5250..5252 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7729.t1.CDS1Gcaud7729.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_729_length_19030_cov_3.966471 5250..6008 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7729.t1.exon1Gcaud7729.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_729_length_19030_cov_3.966471 5250..6008 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7729.t1.start1Gcaud7729.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_729_length_19030_cov_3.966471 6006..6008 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7729.t1Gcaud7729.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_729_length_19030_cov_3.966471 5250..6008 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud7729.t1 ID=Gcaud7729.t1|Name=Gcaud7729.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=253bp
MVAAGCVRRVDFPVVRIDGREERMLLLAGVGLEARAVSGARRRMKRMFGA
LAYGICGIQSIYRQPHFLTHVLLKHVSDSQVFARGELQAQQIQLKSLVLK
GVTIANAAPVTSVLAHGIGSIKPDDGLLELVCIAAEPPLRTLRTVLALLK
SALLRVRERRASVFGMRASEIHVRCEPPQQVVVDGELLGSTPVSVLLSGD
APFVDVVAPKAELVSRRRRRFSRALLRLARNVRGALVLTLVVAALRRARG
AK*
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spliced messenger RNA

>Gcaud7729.t1 ID=Gcaud7729.t1|Name=Gcaud7729.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=759bp|location=Sequence derived from alignment at NODE_729_length_19030_cov_3.966471:5250..6008- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGGCCGCCGGCTGTGTGCGACGCGTCGACTTCCCCGTGGTGCGCAT
CGACGGGCGCGAGGAACGTATGCTGCTGCTGGCGGGCGTGGGGCTGGAGG
CGCGCGCGGTGAGCGGCGCGCGTCGACGCATGAAGCGCATGTTTGGCGCG
TTGGCGTACGGTATTTGTGGCATACAATCCATCTATCGACAGCCGCACTT
CCTCACGCACGTGCTGCTCAAGCACGTGTCGGACAGTCAGGTATTTGCGC
GCGGCGAGTTACAGGCGCAGCAGATCCAACTCAAGTCGCTGGTGCTCAAG
GGCGTCACGATCGCCAACGCGGCGCCCGTCACATCGGTGCTGGCGCACGG
TATAGGCTCCATCAAACCGGACGACGGGCTGCTCGAACTGGTGTGCATCG
CCGCCGAACCGCCGTTGCGCACGCTGCGCACGGTGCTGGCGCTGCTGAAA
AGCGCGCTGCTGCGCGTGCGAGAGCGGCGCGCGAGTGTGTTTGGCATGCG
CGCCAGCGAGATCCACGTGCGGTGTGAGCCGCCGCAACAGGTGGTGGTGG
ACGGCGAGCTGCTGGGCAGCACGCCCGTGAGCGTGCTGCTGAGCGGAGAC
GCGCCGTTTGTGGACGTTGTGGCGCCCAAGGCGGAGCTGGTGTCGCGACG
ACGACGACGCTTCAGCCGCGCGCTGCTGCGACTGGCAAGAAACGTGCGCG
GCGCGCTGGTGCTCACGCTGGTGGTGGCGGCGTTGCGACGCGCGAGAGGC
GCCAAGTAA
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protein sequence of Gcaud7729.t1

>Gcaud7729.t1 ID=Gcaud7729.t1|Name=Gcaud7729.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=253bp
MVAAGCVRRVDFPVVRIDGREERMLLLAGVGLEARAVSGARRRMKRMFGA
LAYGICGIQSIYRQPHFLTHVLLKHVSDSQVFARGELQAQQIQLKSLVLK
GVTIANAAPVTSVLAHGIGSIKPDDGLLELVCIAAEPPLRTLRTVLALLK
SALLRVRERRASVFGMRASEIHVRCEPPQQVVVDGELLGSTPVSVLLSGD
APFVDVVAPKAELVSRRRRRFSRALLRLARNVRGALVLTLVVAALRRARG
AK*
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mRNA from alignment at NODE_729_length_19030_cov_3.966471:5250..6008-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud7729.t1 ID=Gcaud7729.t1|Name=Gcaud7729.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=759bp|location=Sequence derived from alignment at NODE_729_length_19030_cov_3.966471:5250..6008- (Gracilaria caudata M_176_S67 male)
ATGGTGGCCGCCGGCTGTGTGCGACGCGTCGACTTCCCCGTGGTGCGCAT
CGACGGGCGCGAGGAACGTATGCTGCTGCTGGCGGGCGTGGGGCTGGAGG
CGCGCGCGGTGAGCGGCGCGCGTCGACGCATGAAGCGCATGTTTGGCGCG
TTGGCGTACGGTATTTGTGGCATACAATCCATCTATCGACAGCCGCACTT
CCTCACGCACGTGCTGCTCAAGCACGTGTCGGACAGTCAGGTATTTGCGC
GCGGCGAGTTACAGGCGCAGCAGATCCAACTCAAGTCGCTGGTGCTCAAG
GGCGTCACGATCGCCAACGCGGCGCCCGTCACATCGGTGCTGGCGCACGG
TATAGGCTCCATCAAACCGGACGACGGGCTGCTCGAACTGGTGTGCATCG
CCGCCGAACCGCCGTTGCGCACGCTGCGCACGGTGCTGGCGCTGCTGAAA
AGCGCGCTGCTGCGCGTGCGAGAGCGGCGCGCGAGTGTGTTTGGCATGCG
CGCCAGCGAGATCCACGTGCGGTGTGAGCCGCCGCAACAGGTGGTGGTGG
ACGGCGAGCTGCTGGGCAGCACGCCCGTGAGCGTGCTGCTGAGCGGAGAC
GCGCCGTTTGTGGACGTTGTGGCGCCCAAGGCGGAGCTGGTGTCGCGACG
ACGACGACGCTTCAGCCGCGCGCTGCTGCGACTGGCAAGAAACGTGCGCG
GCGCGCTGGTGCTCACGCTGGTGGTGGCGGCGTTGCGACGCGCGAGAGGC
GCCAAGTAA
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Coding sequence (CDS) from alignment at NODE_729_length_19030_cov_3.966471:5250..6008-

>Gcaud7729.t1 ID=Gcaud7729.t1|Name=Gcaud7729.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=759bp|location=Sequence derived from alignment at NODE_729_length_19030_cov_3.966471:5250..6008- (Gracilaria caudata M_176_S67 male)
ATGGTGGCCGCCGGCTGTGTGCGACGCGTCGACTTCCCCGTGGTGCGCAT
CGACGGGCGCGAGGAACGTATGCTGCTGCTGGCGGGCGTGGGGCTGGAGG
CGCGCGCGGTGAGCGGCGCGCGTCGACGCATGAAGCGCATGTTTGGCGCG
TTGGCGTACGGTATTTGTGGCATACAATCCATCTATCGACAGCCGCACTT
CCTCACGCACGTGCTGCTCAAGCACGTGTCGGACAGTCAGGTATTTGCGC
GCGGCGAGTTACAGGCGCAGCAGATCCAACTCAAGTCGCTGGTGCTCAAG
GGCGTCACGATCGCCAACGCGGCGCCCGTCACATCGGTGCTGGCGCACGG
TATAGGCTCCATCAAACCGGACGACGGGCTGCTCGAACTGGTGTGCATCG
CCGCCGAACCGCCGTTGCGCACGCTGCGCACGGTGCTGGCGCTGCTGAAA
AGCGCGCTGCTGCGCGTGCGAGAGCGGCGCGCGAGTGTGTTTGGCATGCG
CGCCAGCGAGATCCACGTGCGGTGTGAGCCGCCGCAACAGGTGGTGGTGG
ACGGCGAGCTGCTGGGCAGCACGCCCGTGAGCGTGCTGCTGAGCGGAGAC
GCGCCGTTTGTGGACGTTGTGGCGCCCAAGGCGGAGCTGGTGTCGCGACG
ACGACGACGCTTCAGCCGCGCGCTGCTGCGACTGGCAAGAAACGTGCGCG
GCGCGCTGGTGCTCACGCTGGTGGTGGCGGCGTTGCGACGCGCGAGAGGC
GCCAAGTAA
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