Gcaud3791.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gcaud3791.t1
Unique Name	Gcaud3791.t1
Type	polypeptide
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	350

Homology

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BLAST of Gcaud3791.t1 vs. uniprot
Match: A0A2V3IPX7_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IPX7_9FLOR)

HSP 1 Score: 317 bits (811), Expect = 5.570e-103
Identity = 199/376 (52.93%), Postives = 241/376 (64.10%), Query Frame = 0

Query:    1 MSSFEEAPKLPREPTLIRDQSLS-VKPVT-----PPPLSSAQSPXXXXXXXXSV------------HVXXXXXXXXXXXXXXXAAAQHTERSPSS----PPLPKISRDAPKEMPLPPKFPSIHDEPAWTSPQSAHTPLSTQMSNASPLVSSAAVN-SEASPSQPVQDVSWNRASSDNLSASLSQPPVQPEEAVDDEQPKGVLAKILGMCKPKKPP-------VDTTEPQSPSKPPLQKVKDIVCKLPDPTLIFVLQASVILLLHTFVPHVLRSWPARIVIPLVLVPTVAVTALWRRTIVIAKPGRSVLSIVKPIPNAGKMVSMGETLRAREAAVIAAEESVREGQMRLEMLRKEIEARLPPQDSITTLLESDQRAQ 346
            MS+F EAP LPREPTLIRDQSLS  +P T     PP L     P         V             +                  ++T  +PS+    PP  K  +DAPK+                          S+ ++  SPL SS+A   SE SPSQP+ +VSWNR SSDNLSASLSQP  QPEE  + ++ KG+LA IL + K KK         +   +  SPSKPP+QKVK++VC LPDPTL+FVL+ASVILL+H F PHVLRSWPARIV+PL+LVPTVA TALWRRT+VIA+PG ++LS+VKPIPNAG +V+MGETLRARE AV+AAEE VREGQMRLEMLRKEIEARLPPQ+SI +LLESD++AQ
Sbjct:    1 MSNFAEAPPLPREPTLIRDQSLSRTQPSTEQSPSPPSLXXXXLPFPEVDSATDVVHPXXXXKPHSPKLTLPPKFPKFHPEIAETVQKNTTVAPSATPPPPPTAKTPKDAPKQXXXXXXXXXXXXXXXXXXXXXXXXXXSSHLNQTSPLASSSAQPASEPSPSQPIPEVSWNRLSSDNLSASLSQPLTQPEEGANADESKGILANILALLKRKKSGSEERDELLQNVQNASPSKPPIQKVKEMVCNLPDPTLVFVLEASVILLIHAFAPHVLRSWPARIVVPLLLVPTVAATALWRRTVVIARPGTTILSLVKPIPNAGMVVNMGETLRAREVAVLAAEERVREGQMRLEMLRKEIEARLPPQESIASLLESDKKAQ 376

The following BLAST results are available for this feature:

BLAST of Gcaud3791.t1 vs. uniprot

BLAST of Gcaud3791.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3IPX7_9FLOR	5.570e-103	52.93	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 104..163
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..49
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..171
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..78
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 220..238
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 244..264
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..219
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 265..349
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 239..243

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_71_length_56537_cov_4.318092	contig	NODE_71_length_56537_cov_4.318092:1576..2625 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3791.t1	Gcaud3791.t1	Gracilaria caudata M_176_S67 male	mRNA	NODE_71_length_56537_cov_4.318092 1576..2625 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gcaud3791.t1 ID=Gcaud3791.t1|Name=Gcaud3791.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=350bp
MSSFEEAPKLPREPTLIRDQSLSVKPVTPPPLSSAQSPPSPPPFPESVHV
AAHPPAASSAQAAASAAAQHTERSPSSPPLPKISRDAPKEMPLPPKFPSI
HDEPAWTSPQSAHTPLSTQMSNASPLVSSAAVNSEASPSQPVQDVSWNRA
SSDNLSASLSQPPVQPEEAVDDEQPKGVLAKILGMCKPKKPPVDTTEPQS
PSKPPLQKVKDIVCKLPDPTLIFVLQASVILLLHTFVPHVLRSWPARIVI
PLVLVPTVAVTALWRRTIVIAKPGRSVLSIVKPIPNAGKMVSMGETLRAR
EAAVIAAEESVREGQMRLEMLRKEIEARLPPQDSITTLLESDQRAQNGS*