Gcaud212.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud212.t1
Unique NameGcaud212.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length314
Homology
BLAST of Gcaud212.t1 vs. uniprot
Match: A0A2V3IEF2_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IEF2_9FLOR)

HSP 1 Score: 315 bits (806), Expect = 6.640e-99
Identity = 181/316 (57.28%), Postives = 230/316 (72.78%), Query Frame = 0
Query:    1 LSSSARAD----AADGDEHDDIAFKEDVVGSAFIIAAALALIVIVHILALKIRLVYWHLTKNPRIYYAHVRAMAASSAELPDLDGLTADSRQRASSLPASSQSPMSLSSPNPHHATAILAHPSSAPAAASSAYGNAGSSGQSVEGRMWDGMERRPGAAAQTAGKKSRPGVSFGEPTVIESAVAAYNSSSREEQDVETGAVQTSQDSGVGEEGLDAGALDMESVHTNGARSDDSKDAALQSELLRHKSLTVTSPTLAKNREEVEQARQTTVREYPWVVTKLMPRLGRQASGAEKLLWFGSHHFFFWCVQFSLFFSTV 312
            LS + RA+    A D    DDIAF+EDVVGSA +IA ALALIVIV +LALKIRL+YWHLTKNPRIYYAHV A+A S     DL   T  S   +++LP ++Q+P+SL+  NPH  T IL+HP++  A   +  G+   SGQS+EG++WD +ER+P A A   G K+RPGVSF + TV+ESAV   N+S REE+D+E GA + S++    E  +D   L+   VHT  A S ++++ +LQ+ELL+HKSL V SPTLAKNRE+VEQAR+  V++YPW+VTKL+PRLGR AS AEKL WFGSHH FFWCVQFSLFFSTV
Sbjct:  243 LSGTVRANDAGSAKDAGPVDDIAFREDVVGSAMLIAFALALIVIVQVLALKIRLIYWHLTKNPRIYYAHVHAVATSPL---DLSQQTPGSLYPSTTLPGNNQNPISLTRANPHDTTPILSHPTAMNAIRPN--GDPAGSGQSLEGQIWDDVERQPQAEASATGDKARPGVSFCDSTVVESAVTGSNASKREEKDLEAGAFRLSREWCADEVVMDREKLNGTGVHTGVASSPETQEVSLQNELLKHKSLAVKSPTLAKNREDVEQAREIEVKKYPWIVTKLIPRLGRVASAAEKLFWFGSHHLFFWCVQFSLFFSTV 553          
BLAST of Gcaud212.t1 vs. uniprot
Match: R7Q6C9_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q6C9_CHOCR)

HSP 1 Score: 88.6 bits (218), Expect = 9.000e-16
Identity = 42/77 (54.55%), Postives = 51/77 (66.23%), Query Frame = 0
Query:  237 ELLRHKSLTVTSPTLAKNREEVEQARQTTVREYPWVVTKLMPRLGRQASGAEKLLWFGSHHFFFWCVQFSLFFSTVL 313
            ++ RH+SL   + T+ KN E+ E A+Q    EY W V KL PRL R AS  EKL W GSH FF WCV+F +FFSTVL
Sbjct:  664 DIARHQSLAFMNATILKNMEDQEHAKQEEPNEYHWFVKKLFPRLARVASPVEKLFWCGSHKFFLWCVEFVMFFSTVL 740          
The following BLAST results are available for this feature:
BLAST of Gcaud212.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IEF2_9FLOR6.640e-9957.28Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7Q6C9_CHOCR9.000e-1654.55Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 183..202
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 85..109
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 124..138
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 80..163
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 47..289
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..23
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 290..313
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 314..314
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 24..46
NoneNo IPR availableTMHMMTMhelixcoord: 290..312
NoneNo IPR availableTMHMMTMhelixcoord: 24..46

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_7138_length_990_cov_3.070078contigNODE_7138_length_990_cov_3.070078:2..942 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud212.t1Gcaud212.t1Gracilaria caudata M_176_S67 malemRNANODE_7138_length_990_cov_3.070078 2..942 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud212.t1 ID=Gcaud212.t1|Name=Gcaud212.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=314bp
LSSSARADAADGDEHDDIAFKEDVVGSAFIIAAALALIVIVHILALKIRL
VYWHLTKNPRIYYAHVRAMAASSAELPDLDGLTADSRQRASSLPASSQSP
MSLSSPNPHHATAILAHPSSAPAAASSAYGNAGSSGQSVEGRMWDGMERR
PGAAAQTAGKKSRPGVSFGEPTVIESAVAAYNSSSREEQDVETGAVQTSQ
DSGVGEEGLDAGALDMESVHTNGARSDDSKDAALQSELLRHKSLTVTSPT
LAKNREEVEQARQTTVREYPWVVTKLMPRLGRQASGAEKLLWFGSHHFFF
WCVQFSLFFSTVLX
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