Gcaud3376.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3376.t1
Unique NameGcaud3376.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length188
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_10186_length_563_cov_11.211864contigNODE_10186_length_563_cov_11.211864:2..563 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog489825.LYNGBM3L_36850
PFAMsDUF2235
Max annot lvl1117|Cyanobacteria
Evalue2.1e-57
EggNOG OGsCOG3673@1|root,COG3673@2|Bacteria,1G1VC@1117|Cyanobacteria,1H9I8@1150|Oscillatoriales
Description'Conserved protein
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3376Gcaud3376Gracilaria caudata M_176_S67 malegeneNODE_10186_length_563_cov_11.211864 2..563 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3376.t1.CDS1Gcaud3376.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_10186_length_563_cov_11.211864 2..563 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3376.t1.exon1Gcaud3376.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_10186_length_563_cov_11.211864 2..563 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3376.t1Gcaud3376.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_10186_length_563_cov_11.211864 2..563 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3376.t1 ID=Gcaud3376.t1|Name=Gcaud3376.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=188bp
XQYAGASGVPQVVFYDEGVGTEGDAIDKIKGGAMGVGIDMNIKQLYTFIV
MNYVDGDEIYLFGFSRGAYTVRSVAGMMYEAGLLYRNKLDFVTEAYALYR
DNKDVDSEEAVKFRTENGRRVPITALVCFDTVGALGIPSYAPFPFSIFSD
ASRYAFHDTTLSELIENAIHVVSIDEEMVPFEPTLMTP
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spliced messenger RNA

>Gcaud3376.t1 ID=Gcaud3376.t1|Name=Gcaud3376.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=562bp|location=Sequence derived from alignment at NODE_10186_length_563_cov_11.211864:2..563+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
TTCAGTATGCGGGTGCAAGCGGCGTTCCGCAGGTGGTGTTCTACGACGAG
GGCGTCGGAACGGAAGGAGACGCGATCGACAAGATCAAGGGCGGCGCCAT
GGGCGTCGGCATCGACATGAACATCAAGCAGCTGTACACGTTCATCGTGA
TGAACTACGTGGACGGCGACGAAATCTATCTGTTCGGATTCTCTCGCGGC
GCGTACACCGTTCGTTCCGTGGCCGGAATGATGTACGAGGCGGGTCTGTT
GTACCGAAACAAACTCGATTTCGTCACCGAAGCTTACGCTCTTTACCGAG
ATAACAAGGATGTGGACTCGGAGGAAGCGGTGAAGTTCCGAACGGAGAAT
GGGCGACGCGTTCCGATTACGGCGCTGGTTTGCTTTGATACTGTGGGCGC
GTTGGGCATTCCGTCGTATGCTCCGTTTCCGTTTTCGATCTTTTCTGATG
CGAGTCGATATGCGTTTCACGATACCACTCTGTCCGAATTGATTGAGAAT
GCCATTCATGTGGTGAGCATCGACGAAGAGATGGTTCCGTTTGAACCCAC
GCTGATGACACC
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protein sequence of Gcaud3376.t1

>Gcaud3376.t1 ID=Gcaud3376.t1|Name=Gcaud3376.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=188bp
XQYAGASGVPQVVFYDEGVGTEGDAIDKIKGGAMGVGIDMNIKQLYTFIV
MNYVDGDEIYLFGFSRGAYTVRSVAGMMYEAGLLYRNKLDFVTEAYALYR
DNKDVDSEEAVKFRTENGRRVPITALVCFDTVGALGIPSYAPFPFSIFSD
ASRYAFHDTTLSELIENAIHVVSIDEEMVPFEPTLMTP
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mRNA from alignment at NODE_10186_length_563_cov_11.211864:2..563+

Legend: CDSpolypeptideexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3376.t1 ID=Gcaud3376.t1|Name=Gcaud3376.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=562bp|location=Sequence derived from alignment at NODE_10186_length_563_cov_11.211864:2..563+ (Gracilaria caudata M_176_S67 male)
TTCAGTATGCGGGTGCAAGCGGCGTTCCGCAGGTGGTGTTCTACGACGAG
GGCGTCGGAACGGAAGGAGACGCGATCGACAAGATCAAGGGCGGCGCCAT
GGGCGTCGGCATCGACATGAACATCAAGCAGCTGTACACGTTCATCGTGA
TGAACTACGTGGACGGCGACGAAATCTATCTGTTCGGATTCTCTCGCGGC
GCGTACACCGTTCGTTCCGTGGCCGGAATGATGTACGAGGCGGGTCTGTT
GTACCGAAACAAACTCGATTTCGTCACCGAAGCTTACGCTCTTTACCGAG
ATAACAAGGATGTGGACTCGGAGGAAGCGGTGAAGTTCCGAACGGAGAAT
GGGCGACGCGTTCCGATTACGGCGCTGGTTTGCTTTGATACTGTGGGCGC
GTTGGGCATTCCGTCGTATGCTCCGTTTCCGTTTTCGATCTTTTCTGATG
CGAGTCGATATGCGTTTCACGATACCACTCTGTCCGAATTGATTGAGAAT
GCCATTCATGTGGTGAGCATCGACGAAGAGATGGTTCCGTTTGAACCCAC
GCTGATGACACC
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Coding sequence (CDS) from alignment at NODE_10186_length_563_cov_11.211864:2..563+

>Gcaud3376.t1 ID=Gcaud3376.t1|Name=Gcaud3376.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=562bp|location=Sequence derived from alignment at NODE_10186_length_563_cov_11.211864:2..563+ (Gracilaria caudata M_176_S67 male)
TTCAGTATGCGGGTGCAAGCGGCGTTCCGCAGGTGGTGTTCTACGACGAG
GGCGTCGGAACGGAAGGAGACGCGATCGACAAGATCAAGGGCGGCGCCAT
GGGCGTCGGCATCGACATGAACATCAAGCAGCTGTACACGTTCATCGTGA
TGAACTACGTGGACGGCGACGAAATCTATCTGTTCGGATTCTCTCGCGGC
GCGTACACCGTTCGTTCCGTGGCCGGAATGATGTACGAGGCGGGTCTGTT
GTACCGAAACAAACTCGATTTCGTCACCGAAGCTTACGCTCTTTACCGAG
ATAACAAGGATGTGGACTCGGAGGAAGCGGTGAAGTTCCGAACGGAGAAT
GGGCGACGCGTTCCGATTACGGCGCTGGTTTGCTTTGATACTGTGGGCGC
GTTGGGCATTCCGTCGTATGCTCCGTTTCCGTTTTCGATCTTTTCTGATG
CGAGTCGATATGCGTTTCACGATACCACTCTGTCCGAATTGATTGAGAAT
GCCATTCATGTGGTGAGCATCGACGAAGAGATGGTTCCGTTTGAACCCAC
GCTGATGACACC
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