Gcaud2061.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2061.t1
Unique Name	Gcaud2061.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	344

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_6981_length_1030_cov_4.843450	contig	NODE_6981_length_1030_cov_4.843450:2..1030 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2061	Gcaud2061	Gracilaria caudata M_176_S67 male	gene	NODE_6981_length_1030_cov_4.843450 2..1030 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2061.t1.CDS1	Gcaud2061.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_6981_length_1030_cov_4.843450 2..1030 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2061.t1.exon1	Gcaud2061.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_6981_length_1030_cov_4.843450 2..1030 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2061.t1	Gcaud2061.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_6981_length_1030_cov_4.843450 2..1030 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_6981_length_1030_cov_4.843450:2..1030+
coding sequence from alignment at NODE_6981_length_1030_cov_4.843450:2..1030+

mRNA sequence

>Gcaud2061.t1 ID=Gcaud2061.t1|Name=Gcaud2061.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=344bp
XEKLRYFLSPLGCSDRLLSLLAGHIGSRSSNKISPEEVRRFLNAVVDFDC
NFFDDVLNQTQLDSWFSLIESSTVWEEGIVEKYGGKCELLPFVQTRIANV
KEGQVLDMKDDDQVDEIQTNHIESKKLLMEDIRLLVESRTSHSSDYKVPP
RVVNEMTRLYTSLAGTERKPVLIQDSFWIEEMLSRNISLSRLMKPSDLEF
LKSQTQKAIRSAIIKSWDDVERVLCPFLVSKNKKTEKWICFAVFQSSRTI
NIYNPSVSIRKGLAKEEKDAVDALKAYFVYHPSPNWAGRYRCSGNDLTFP
QVVSCIDSGVFVLLACRFALLGLPNVFSQADIQDYRQRFANEIX

spliced messenger RNA

>Gcaud2061.t1 ID=Gcaud2061.t1|Name=Gcaud2061.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1029bp|location=Sequence derived from alignment at NODE_6981_length_1030_cov_4.843450:2..1030+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGAAAAACTACGGTACTTTTTGTCTCCGTTGGGATGTTCTGATCGGCTT
TTGTCCTTACTTGCGGGTCATATAGGCAGTCGCTCATCAAACAAAATATC
GCCGGAGGAAGTTAGGAGGTTTCTCAATGCGGTAGTAGACTTTGACTGCA
ACTTTTTCGATGATGTTTTGAATCAAACTCAATTGGATTCGTGGTTTTCG
TTGATTGAATCAAGTACGGTGTGGGAGGAAGGTATCGTTGAAAAGTATGG
CGGAAAATGTGAGCTTCTTCCGTTTGTGCAGACGAGAATTGCAAACGTGA
AGGAGGGACAGGTTTTAGACATGAAAGATGATGATCAGGTCGACGAAATC
CAAACCAACCATATAGAATCGAAGAAGCTCTTGATGGAAGACATACGGCT
TTTAGTAGAGTCCAGAACTTCGCATTCAAGTGATTATAAGGTACCGCCTC
GAGTGGTAAACGAAATGACGAGACTTTATACCTCCCTGGCCGGAACAGAA
AGGAAACCGGTTTTAATTCAAGATTCTTTCTGGATTGAAGAAATGTTATC
GCGGAATATCTCTCTATCCCGATTGATGAAGCCTAGCGATCTTGAATTCT
TGAAGAGCCAAACACAGAAAGCAATTCGTAGCGCAATCATTAAATCTTGG
GACGATGTTGAGCGAGTTTTGTGCCCGTTTTTGGTCAGTAAGAACAAGAA
AACCGAAAAATGGATATGCTTCGCAGTGTTCCAATCGTCTCGAACTATAA
ATATATACAATCCGTCGGTTTCAATTAGGAAAGGACTCGCGAAGGAAGAA
AAAGACGCCGTCGATGCCCTGAAAGCTTATTTTGTGTATCATCCTAGTCC
GAACTGGGCTGGTCGATATCGATGCTCTGGTAACGATCTTACATTTCCTC
AAGTAGTTTCATGTATAGACAGTGGTGTTTTCGTACTCCTAGCATGCCGT
TTTGCCTTGCTGGGATTGCCGAACGTTTTCTCTCAAGCTGACATTCAAGA
CTATCGTCAGAGATTCGCCAATGAGATTT

protein sequence of Gcaud2061.t1

>Gcaud2061.t1 ID=Gcaud2061.t1|Name=Gcaud2061.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=344bp
XEKLRYFLSPLGCSDRLLSLLAGHIGSRSSNKISPEEVRRFLNAVVDFDC
NFFDDVLNQTQLDSWFSLIESSTVWEEGIVEKYGGKCELLPFVQTRIANV
KEGQVLDMKDDDQVDEIQTNHIESKKLLMEDIRLLVESRTSHSSDYKVPP
RVVNEMTRLYTSLAGTERKPVLIQDSFWIEEMLSRNISLSRLMKPSDLEF
LKSQTQKAIRSAIIKSWDDVERVLCPFLVSKNKKTEKWICFAVFQSSRTI
NIYNPSVSIRKGLAKEEKDAVDALKAYFVYHPSPNWAGRYRCSGNDLTFP
QVVSCIDSGVFVLLACRFALLGLPNVFSQADIQDYRQRFANEIX

mRNA from alignment at NODE_6981_length_1030_cov_4.843450:2..1030+

Legend: CDSpolypeptideexon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2061.t1 ID=Gcaud2061.t1|Name=Gcaud2061.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1029bp|location=Sequence derived from alignment at NODE_6981_length_1030_cov_4.843450:2..1030+ (Gracilaria caudata M_176_S67 male)
CTGAAAAACTACGGTACTTTTTGTCTCCGTTGGGATGTTCTGATCGGCTT
TTGTCCTTACTTGCGGGTCATATAGGCAGTCGCTCATCAAACAAAATATC
GCCGGAGGAAGTTAGGAGGTTTCTCAATGCGGTAGTAGACTTTGACTGCA
ACTTTTTCGATGATGTTTTGAATCAAACTCAATTGGATTCGTGGTTTTCG
TTGATTGAATCAAGTACGGTGTGGGAGGAAGGTATCGTTGAAAAGTATGG
CGGAAAATGTGAGCTTCTTCCGTTTGTGCAGACGAGAATTGCAAACGTGA
AGGAGGGACAGGTTTTAGACATGAAAGATGATGATCAGGTCGACGAAATC
CAAACCAACCATATAGAATCGAAGAAGCTCTTGATGGAAGACATACGGCT
TTTAGTAGAGTCCAGAACTTCGCATTCAAGTGATTATAAGGTACCGCCTC
GAGTGGTAAACGAAATGACGAGACTTTATACCTCCCTGGCCGGAACAGAA
AGGAAACCGGTTTTAATTCAAGATTCTTTCTGGATTGAAGAAATGTTATC
GCGGAATATCTCTCTATCCCGATTGATGAAGCCTAGCGATCTTGAATTCT
TGAAGAGCCAAACACAGAAAGCAATTCGTAGCGCAATCATTAAATCTTGG
GACGATGTTGAGCGAGTTTTGTGCCCGTTTTTGGTCAGTAAGAACAAGAA
AACCGAAAAATGGATATGCTTCGCAGTGTTCCAATCGTCTCGAACTATAA
ATATATACAATCCGTCGGTTTCAATTAGGAAAGGACTCGCGAAGGAAGAA
AAAGACGCCGTCGATGCCCTGAAAGCTTATTTTGTGTATCATCCTAGTCC
GAACTGGGCTGGTCGATATCGATGCTCTGGTAACGATCTTACATTTCCTC
AAGTAGTTTCATGTATAGACAGTGGTGTTTTCGTACTCCTAGCATGCCGT
TTTGCCTTGCTGGGATTGCCGAACGTTTTCTCTCAAGCTGACATTCAAGA
CTATCGTCAGAGATTCGCCAATGAGATTT

Coding sequence (CDS) from alignment at NODE_6981_length_1030_cov_4.843450:2..1030+

>Gcaud2061.t1 ID=Gcaud2061.t1|Name=Gcaud2061.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1029bp|location=Sequence derived from alignment at NODE_6981_length_1030_cov_4.843450:2..1030+ (Gracilaria caudata M_176_S67 male)
CTGAAAAACTACGGTACTTTTTGTCTCCGTTGGGATGTTCTGATCGGCTT
TTGTCCTTACTTGCGGGTCATATAGGCAGTCGCTCATCAAACAAAATATC
GCCGGAGGAAGTTAGGAGGTTTCTCAATGCGGTAGTAGACTTTGACTGCA
ACTTTTTCGATGATGTTTTGAATCAAACTCAATTGGATTCGTGGTTTTCG
TTGATTGAATCAAGTACGGTGTGGGAGGAAGGTATCGTTGAAAAGTATGG
CGGAAAATGTGAGCTTCTTCCGTTTGTGCAGACGAGAATTGCAAACGTGA
AGGAGGGACAGGTTTTAGACATGAAAGATGATGATCAGGTCGACGAAATC
CAAACCAACCATATAGAATCGAAGAAGCTCTTGATGGAAGACATACGGCT
TTTAGTAGAGTCCAGAACTTCGCATTCAAGTGATTATAAGGTACCGCCTC
GAGTGGTAAACGAAATGACGAGACTTTATACCTCCCTGGCCGGAACAGAA
AGGAAACCGGTTTTAATTCAAGATTCTTTCTGGATTGAAGAAATGTTATC
GCGGAATATCTCTCTATCCCGATTGATGAAGCCTAGCGATCTTGAATTCT
TGAAGAGCCAAACACAGAAAGCAATTCGTAGCGCAATCATTAAATCTTGG
GACGATGTTGAGCGAGTTTTGTGCCCGTTTTTGGTCAGTAAGAACAAGAA
AACCGAAAAATGGATATGCTTCGCAGTGTTCCAATCGTCTCGAACTATAA
ATATATACAATCCGTCGGTTTCAATTAGGAAAGGACTCGCGAAGGAAGAA
AAAGACGCCGTCGATGCCCTGAAAGCTTATTTTGTGTATCATCCTAGTCC
GAACTGGGCTGGTCGATATCGATGCTCTGGTAACGATCTTACATTTCCTC
AAGTAGTTTCATGTATAGACAGTGGTGTTTTCGTACTCCTAGCATGCCGT
TTTGCCTTGCTGGGATTGCCGAACGTTTTCTCTCAAGCTGACATTCAAGA
CTATCGTCAGAGATTCGCCAATGAGATTT