Gcaud1428.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1428.t1
Unique Name	Gcaud1428.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	572

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_674_length_19871_cov_4.599949	contig	NODE_674_length_19871_cov_4.599949:15421..17316 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	10224.XP_006814872.1
PFAMs	NB-ARC,WD40
Max annot lvl	33208\|Metazoa
Evalue	0.000341
EggNOG OGs	COG2319@1\|root,KOG0272@1\|root,KOG0272@2759\|Eukaryota,KOG3602@2759\|Eukaryota,3A3HT@33154\|Opisthokonta,3BRFV@33208\|Metazoa,3DF00@33213\|Bilateria
Description	NB-ARC domain
COG category	AT

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1428	Gcaud1428	Gracilaria caudata M_176_S67 male	gene	NODE_674_length_19871_cov_4.599949 15421..17316 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1428.t1	Gcaud1428.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_674_length_19871_cov_4.599949 15421..17316 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1428.t1.start1	Gcaud1428.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_674_length_19871_cov_4.599949 15421..15423 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1428.t1.CDS1	Gcaud1428.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_674_length_19871_cov_4.599949 15421..16561 +
Gcaud1428.t1.CDS2	Gcaud1428.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_674_length_19871_cov_4.599949 16742..17316 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1428.t1.exon1	Gcaud1428.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_674_length_19871_cov_4.599949 15421..16561 +
Gcaud1428.t1.exon2	Gcaud1428.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_674_length_19871_cov_4.599949 16742..17316 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1428.t1.intron1	Gcaud1428.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_674_length_19871_cov_4.599949 16562..16741 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1428.t1.stop1	Gcaud1428.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_674_length_19871_cov_4.599949 17314..17316 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_674_length_19871_cov_4.599949:15421..17316+
coding sequence from alignment at NODE_674_length_19871_cov_4.599949:15421..17316+

mRNA sequence

>Gcaud1428.t1 ID=Gcaud1428.t1|Name=Gcaud1428.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=572bp
MTLGKDAGKNKLMQELARIVERTGDRTRARRIRDSNDLETAVNETRIWFD
SRKCLFIVDDVWNGNGFDTGTIYALADMVNEESCLVWTTRDPCISLKGSK
CIEFQPRTREESRAMFLKHAGLEESMIDDEKNKDAMLEILAICGGIPLLL
AVSGAGVRHCSGRVDGPTQNAVCLYYQKLRRSPGDMFSQNCDGYGPVRNI
VEASLSVATDRWRESMKQQIFPMSIGKMFRSLCVLEKQQAVPVSMLQRLW
GLSDKKSAVEVMDALSEVGLVQVTDSEDFEEMKSVLRVHDEILDLLMLDP
LSKDHNKVHFKRLLDGYCTWNENRVHYQQNDFSEGKRRIEDRLTKNSNLG
IMRRLCCWKRYDNEREQEKQLQIVDPKDPFSNRTPKMLNSALDGEQDKMI
GFCIQEILMHQILIYLSSNVISQLAGWVIEHLRTCETCQENFDCSAVAGL
EDMMSFEFPEERMPEIDKEVAVVDVAEFDVSVEPAKWCFRMGITLVDLDD
FRDCLWKTFDKRRILLPELGLEARLTTNTVATLSGCMERRILVEVEALYQ
DVSNWFLRLIQLVVEEASQNN*

spliced messenger RNA

>Gcaud1428.t1 ID=Gcaud1428.t1|Name=Gcaud1428.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1716bp|location=Sequence derived from alignment at NODE_674_length_19871_cov_4.599949:15421..17316+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTTTAGGCAAGGACGCAGGAAAGAACAAACTGATGCAAGAGCTTGC
CCGGATTGTTGAGAGAACTGGAGATAGAACACGAGCACGGAGGATTCGAG
ATTCAAATGACCTGGAAACAGCAGTTAATGAGACTAGGATTTGGTTTGAT
TCTCGCAAATGTCTCTTCATCGTTGACGATGTGTGGAATGGCAATGGTTT
TGATACCGGGACCATCTATGCATTGGCAGATATGGTCAACGAAGAAAGCT
GTCTAGTATGGACAACGAGAGACCCTTGTATTTCTCTGAAGGGCAGCAAA
TGCATTGAGTTTCAGCCTAGGACAAGGGAAGAATCTCGTGCTATGTTTTT
GAAACACGCTGGCTTAGAAGAGTCTATGATTGACGATGAAAAGAACAAAG
ATGCAATGCTTGAAATTTTGGCGATCTGTGGTGGAATACCGTTGCTACTT
GCTGTCAGTGGTGCTGGCGTCCGCCATTGTTCCGGACGTGTAGACGGTCC
AACACAAAATGCGGTTTGCTTGTATTATCAGAAATTGAGAAGAAGCCCGG
GAGATATGTTTTCGCAAAACTGTGACGGGTATGGACCAGTTAGAAATATT
GTTGAGGCTTCTTTGTCAGTGGCGACAGATCGTTGGAGGGAAAGCATGAA
GCAGCAAATTTTTCCAATGTCGATTGGGAAGATGTTCCGATCTCTTTGCG
TTCTTGAGAAACAGCAAGCAGTACCAGTATCGATGTTGCAGCGGTTGTGG
GGTCTGAGTGACAAGAAAAGTGCTGTAGAAGTGATGGATGCTTTATCTGA
AGTGGGACTCGTTCAAGTGACTGATTCCGAAGATTTTGAGGAGATGAAGT
CAGTGCTACGTGTACACGATGAAATCTTGGATTTGCTGATGCTCGACCCT
TTGTCAAAAGATCACAACAAAGTCCATTTCAAACGATTACTGGACGGATA
CTGTACCTGGAATGAAAATCGCGTTCATTACCAACAGAACGATTTCTCAG
AAGGCAAGAGACGTATAGAAGATAGGCTGACAAAGAACTCGAACCTTGGC
ATCATGAGACGACTTTGTTGTTGGAAAAGATACGACAATGAACGAGAACA
GGAGAAGCAATTGCAAATTGTAGATCCAAAGGACCCATTTTCTAACAGAA
CGCCGAAAATGCTGAATTCTGCCTTAGATGGAGAGCAGGATAAGATGATC
GGCTTCTGTATCCAAGAGATATTGATGCACCAGATTCTTATATATCTTTC
GAGCAACGTGATCTCTCAGTTGGCAGGTTGGGTGATTGAACATTTGAGGA
CGTGCGAGACATGTCAGGAGAACTTTGATTGTTCAGCTGTGGCCGGCCTT
GAGGACATGATGTCATTCGAATTTCCAGAAGAGCGAATGCCAGAAATCGA
CAAAGAAGTGGCTGTAGTTGATGTTGCTGAATTTGATGTTTCTGTGGAAC
CCGCAAAATGGTGTTTCAGAATGGGAATTACTCTGGTTGATCTCGATGAT
TTCAGGGATTGTCTGTGGAAAACATTTGACAAGCGCCGGATATTGTTACC
CGAACTAGGACTCGAGGCGCGACTGACAACAAACACAGTTGCAACGTTGT
CAGGCTGTATGGAAAGGAGGATTTTAGTGGAAGTGGAAGCTCTTTACCAA
GATGTTAGTAACTGGTTTCTTCGCCTCATTCAGCTGGTTGTCGAAGAAGC
TTCACAAAATAATTAG

protein sequence of Gcaud1428.t1

>Gcaud1428.t1 ID=Gcaud1428.t1|Name=Gcaud1428.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=572bp
MTLGKDAGKNKLMQELARIVERTGDRTRARRIRDSNDLETAVNETRIWFD
SRKCLFIVDDVWNGNGFDTGTIYALADMVNEESCLVWTTRDPCISLKGSK
CIEFQPRTREESRAMFLKHAGLEESMIDDEKNKDAMLEILAICGGIPLLL
AVSGAGVRHCSGRVDGPTQNAVCLYYQKLRRSPGDMFSQNCDGYGPVRNI
VEASLSVATDRWRESMKQQIFPMSIGKMFRSLCVLEKQQAVPVSMLQRLW
GLSDKKSAVEVMDALSEVGLVQVTDSEDFEEMKSVLRVHDEILDLLMLDP
LSKDHNKVHFKRLLDGYCTWNENRVHYQQNDFSEGKRRIEDRLTKNSNLG
IMRRLCCWKRYDNEREQEKQLQIVDPKDPFSNRTPKMLNSALDGEQDKMI
GFCIQEILMHQILIYLSSNVISQLAGWVIEHLRTCETCQENFDCSAVAGL
EDMMSFEFPEERMPEIDKEVAVVDVAEFDVSVEPAKWCFRMGITLVDLDD
FRDCLWKTFDKRRILLPELGLEARLTTNTVATLSGCMERRILVEVEALYQ
DVSNWFLRLIQLVVEEASQNN*

mRNA from alignment at NODE_674_length_19871_cov_4.599949:15421..17316+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1428.t1 ID=Gcaud1428.t1|Name=Gcaud1428.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1896bp|location=Sequence derived from alignment at NODE_674_length_19871_cov_4.599949:15421..17316+ (Gracilaria caudata M_176_S67 male)
ATGACTTTAGGCAAGGACGCAGGAAAGAACAAACTGATGCAAGAGCTTGC
CCGGATTGTTGAGAGAACTGGAGATAGAACACGAGCACGGAGGATTCGAG
ATTCAAATGACCTGGAAACAGCAGTTAATGAGACTAGGATTTGGTTTGAT
TCTCGCAAATGTCTCTTCATCGTTGACGATGTGTGGAATGGCAATGGTTT
TGATACCGGGACCATCTATGCATTGGCAGATATGGTCAACGAAGAAAGCT
GTCTAGTATGGACAACGAGAGACCCTTGTATTTCTCTGAAGGGCAGCAAA
TGCATTGAGTTTCAGCCTAGGACAAGGGAAGAATCTCGTGCTATGTTTTT
GAAACACGCTGGCTTAGAAGAGTCTATGATTGACGATGAAAAGAACAAAG
ATGCAATGCTTGAAATTTTGGCGATCTGTGGTGGAATACCGTTGCTACTT
GCTGTCAGTGGTGCTGGCGTCCGCCATTGTTCCGGACGTGTAGACGGTCC
AACACAAAATGCGGTTTGCTTGTATTATCAGAAATTGAGAAGAAGCCCGG
GAGATATGTTTTCGCAAAACTGTGACGGGTATGGACCAGTTAGAAATATT
GTTGAGGCTTCTTTGTCAGTGGCGACAGATCGTTGGAGGGAAAGCATGAA
GCAGCAAATTTTTCCAATGTCGATTGGGAAGATGTTCCGATCTCTTTGCG
TTCTTGAGAAACAGCAAGCAGTACCAGTATCGATGTTGCAGCGGTTGTGG
GGTCTGAGTGACAAGAAAAGTGCTGTAGAAGTGATGGATGCTTTATCTGA
AGTGGGACTCGTTCAAGTGACTGATTCCGAAGATTTTGAGGAGATGAAGT
CAGTGCTACGTGTACACGATGAAATCTTGGATTTGCTGATGCTCGACCCT
TTGTCAAAAGATCACAACAAAGTCCATTTCAAACGATTACTGGACGGATA
CTGTACCTGGAATGAAAATCGCGTTCATTACCAACAGAACGATTTCTCAG
AAGGCAAGAGACGTATAGAAGATAGGCTGACAAAGAACTCGAACCTTGGC
ATCATGAGACGACTTTGTTGTTGGAAAAGATACGACAATGAACGAGAACA
GGAGAAGCAATTGCAAATTGTAGATCCAAAGGACCCATTTTGTAAAAGGC
Aatggtggaaggttgaagacgacggattcctgcacgagaacctgtttcga
ctacttctgcaagcaggagaatacgaagaattgtcttgggtacggtccca
accacaatggtttgaaacgcgagtggcggaagacggTTTGTTCGCTTTCC
TAAGGAACATTTCAATCGCAGCTAACAGAACGCCGAAAATGCTGAATTCT
GCCTTAGATGGAGAGCAGGATAAGATGATCGGCTTCTGTATCCAAGAGAT
ATTGATGCACCAGATTCTTATATATCTTTCGAGCAACGTGATCTCTCAGT
TGGCAGGTTGGGTGATTGAACATTTGAGGACGTGCGAGACATGTCAGGAG
AACTTTGATTGTTCAGCTGTGGCCGGCCTTGAGGACATGATGTCATTCGA
ATTTCCAGAAGAGCGAATGCCAGAAATCGACAAAGAAGTGGCTGTAGTTG
ATGTTGCTGAATTTGATGTTTCTGTGGAACCCGCAAAATGGTGTTTCAGA
ATGGGAATTACTCTGGTTGATCTCGATGATTTCAGGGATTGTCTGTGGAA
AACATTTGACAAGCGCCGGATATTGTTACCCGAACTAGGACTCGAGGCGC
GACTGACAACAAACACAGTTGCAACGTTGTCAGGCTGTATGGAAAGGAGG
ATTTTAGTGGAAGTGGAAGCTCTTTACCAAGATGTTAGTAACTGGTTTCT
TCGCCTCATTCAGCTGGTTGTCGAAGAAGCTTCACAAAATAATTAG

Coding sequence (CDS) from alignment at NODE_674_length_19871_cov_4.599949:15421..17316+

>Gcaud1428.t1 ID=Gcaud1428.t1|Name=Gcaud1428.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1716bp|location=Sequence derived from alignment at NODE_674_length_19871_cov_4.599949:15421..17316+ (Gracilaria caudata M_176_S67 male)
ATGACTTTAGGCAAGGACGCAGGAAAGAACAAACTGATGCAAGAGCTTGC
CCGGATTGTTGAGAGAACTGGAGATAGAACACGAGCACGGAGGATTCGAG
ATTCAAATGACCTGGAAACAGCAGTTAATGAGACTAGGATTTGGTTTGAT
TCTCGCAAATGTCTCTTCATCGTTGACGATGTGTGGAATGGCAATGGTTT
TGATACCGGGACCATCTATGCATTGGCAGATATGGTCAACGAAGAAAGCT
GTCTAGTATGGACAACGAGAGACCCTTGTATTTCTCTGAAGGGCAGCAAA
TGCATTGAGTTTCAGCCTAGGACAAGGGAAGAATCTCGTGCTATGTTTTT
GAAACACGCTGGCTTAGAAGAGTCTATGATTGACGATGAAAAGAACAAAG
ATGCAATGCTTGAAATTTTGGCGATCTGTGGTGGAATACCGTTGCTACTT
GCTGTCAGTGGTGCTGGCGTCCGCCATTGTTCCGGACGTGTAGACGGTCC
AACACAAAATGCGGTTTGCTTGTATTATCAGAAATTGAGAAGAAGCCCGG
GAGATATGTTTTCGCAAAACTGTGACGGGTATGGACCAGTTAGAAATATT
GTTGAGGCTTCTTTGTCAGTGGCGACAGATCGTTGGAGGGAAAGCATGAA
GCAGCAAATTTTTCCAATGTCGATTGGGAAGATGTTCCGATCTCTTTGCG
TTCTTGAGAAACAGCAAGCAGTACCAGTATCGATGTTGCAGCGGTTGTGG
GGTCTGAGTGACAAGAAAAGTGCTGTAGAAGTGATGGATGCTTTATCTGA
AGTGGGACTCGTTCAAGTGACTGATTCCGAAGATTTTGAGGAGATGAAGT
CAGTGCTACGTGTACACGATGAAATCTTGGATTTGCTGATGCTCGACCCT
TTGTCAAAAGATCACAACAAAGTCCATTTCAAACGATTACTGGACGGATA
CTGTACCTGGAATGAAAATCGCGTTCATTACCAACAGAACGATTTCTCAG
AAGGCAAGAGACGTATAGAAGATAGGCTGACAAAGAACTCGAACCTTGGC
ATCATGAGACGACTTTGTTGTTGGAAAAGATACGACAATGAACGAGAACA
GGAGAAGCAATTGCAAATTGTAGATCCAAAGGACCCATTTTCTAACAGAA
CGCCGAAAATGCTGAATTCTGCCTTAGATGGAGAGCAGGATAAGATGATC
GGCTTCTGTATCCAAGAGATATTGATGCACCAGATTCTTATATATCTTTC
GAGCAACGTGATCTCTCAGTTGGCAGGTTGGGTGATTGAACATTTGAGGA
CGTGCGAGACATGTCAGGAGAACTTTGATTGTTCAGCTGTGGCCGGCCTT
GAGGACATGATGTCATTCGAATTTCCAGAAGAGCGAATGCCAGAAATCGA
CAAAGAAGTGGCTGTAGTTGATGTTGCTGAATTTGATGTTTCTGTGGAAC
CCGCAAAATGGTGTTTCAGAATGGGAATTACTCTGGTTGATCTCGATGAT
TTCAGGGATTGTCTGTGGAAAACATTTGACAAGCGCCGGATATTGTTACC
CGAACTAGGACTCGAGGCGCGACTGACAACAAACACAGTTGCAACGTTGT
CAGGCTGTATGGAAAGGAGGATTTTAGTGGAAGTGGAAGCTCTTTACCAA
GATGTTAGTAACTGGTTTCTTCGCCTCATTCAGCTGGTTGTCGAAGAAGC
TTCACAAAATAATTAG