Gcaud1427.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1427.t1
Unique NameGcaud1427.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length79
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_674_length_19871_cov_4.599949contigNODE_674_length_19871_cov_4.599949:11727..12041 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1427Gcaud1427Gracilaria caudata M_176_S67 malegeneNODE_674_length_19871_cov_4.599949 11727..12041 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1427.t1Gcaud1427.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_674_length_19871_cov_4.599949 11727..12041 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1427.t1.stop1Gcaud1427.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_674_length_19871_cov_4.599949 11727..11729 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1427.t1.CDS1Gcaud1427.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_674_length_19871_cov_4.599949 11727..11938 -
Gcaud1427.t1.CDS2Gcaud1427.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_674_length_19871_cov_4.599949 12017..12041 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1427.t1.exon1Gcaud1427.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_674_length_19871_cov_4.599949 11727..11938 -
Gcaud1427.t1.exon2Gcaud1427.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_674_length_19871_cov_4.599949 12017..12041 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1427.t1.intron1Gcaud1427.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_674_length_19871_cov_4.599949 11939..12016 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1427.t1.start1Gcaud1427.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_674_length_19871_cov_4.599949 12039..12041 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1427.t1 ID=Gcaud1427.t1|Name=Gcaud1427.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=79bp
LQGTNILQICTVNTARARSPIFYPAVEKQHTLRILLSAGLRLKTNAPPAL
MNDVSKARRRYQGHASREQNSFGPCRHL*
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spliced messenger RNA

>Gcaud1427.t1 ID=Gcaud1427.t1|Name=Gcaud1427.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=237bp|location=Sequence derived from alignment at NODE_674_length_19871_cov_4.599949:11727..12041- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGCAGGGTACAAACATACTACAAATTTGCACAGTCAACACAGCTAGAGC
AAGATCCCCTATTTTTTATCCAGCCGTGGAAAAGCAGCACACGCTGCGCA
TTCTCTTATCCGCTGGACTCAGGTTGAAGACCAACGCCCCACCGGCTCTG
ATGAACGACGTCTCTAAAGCTCGAAGAAGATACCAAGGGCATGCGAGTCG
GGAGCAGAACAGTTTCGGTCCGTGTAGACACTTGTGA
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protein sequence of Gcaud1427.t1

>Gcaud1427.t1 ID=Gcaud1427.t1|Name=Gcaud1427.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=79bp
LQGTNILQICTVNTARARSPIFYPAVEKQHTLRILLSAGLRLKTNAPPAL
MNDVSKARRRYQGHASREQNSFGPCRHL*
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mRNA from alignment at NODE_674_length_19871_cov_4.599949:11727..12041-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1427.t1 ID=Gcaud1427.t1|Name=Gcaud1427.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=315bp|location=Sequence derived from alignment at NODE_674_length_19871_cov_4.599949:11727..12041- (Gracilaria caudata M_176_S67 male)
CTGCAGGGTACAAACATACTACAAAGTAACTATAAAATGCGACTCAGCAT
CCATATGCATACACGAGCAACGTGATTTCTGACTTTGAGCCATCGTTCCG
TAGTTTGCACAGTCAACACAGCTAGAGCAAGATCCCCTATTTTTTATCCA
GCCGTGGAAAAGCAGCACACGCTGCGCATTCTCTTATCCGCTGGACTCAG
GTTGAAGACCAACGCCCCACCGGCTCTGATGAACGACGTCTCTAAAGCTC
GAAGAAGATACCAAGGGCATGCGAGTCGGGAGCAGAACAGTTTCGGTCCG
TGTAGACACTTGTGA
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Coding sequence (CDS) from alignment at NODE_674_length_19871_cov_4.599949:11727..12041-

>Gcaud1427.t1 ID=Gcaud1427.t1|Name=Gcaud1427.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=237bp|location=Sequence derived from alignment at NODE_674_length_19871_cov_4.599949:11727..12041- (Gracilaria caudata M_176_S67 male)
CTGCAGGGTACAAACATACTACAAATTTGCACAGTCAACACAGCTAGAGC
AAGATCCCCTATTTTTTATCCAGCCGTGGAAAAGCAGCACACGCTGCGCA
TTCTCTTATCCGCTGGACTCAGGTTGAAGACCAACGCCCCACCGGCTCTG
ATGAACGACGTCTCTAAAGCTCGAAGAAGATACCAAGGGCATGCGAGTCG
GGAGCAGAACAGTTTCGGTCCGTGTAGACACTTGTGA
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