Gcaud146.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud146.t1
Unique Name	Gcaud146.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	531

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1170_length_13095_cov_4.399031	contig	NODE_1170_length_13095_cov_4.399031:1266..2858 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1453501.JELR01000002_gene98
Max annot lvl	1236\|Gammaproteobacteria
Evalue	1.55e-75
EggNOG OGs	COG2931@1\|root,COG2931@2\|Bacteria,1QX4P@1224\|Proteobacteria,1T5MB@1236\|Gammaproteobacteria
Description	calcium- and calmodulin-responsive adenylate cyclase activity
COG category	Q

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud146	Gcaud146	Gracilaria caudata M_176_S67 male	gene	NODE_1170_length_13095_cov_4.399031 1266..2858 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud146.t1.start1	Gcaud146.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1170_length_13095_cov_4.399031 1266..1268 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud146.t1.CDS1	Gcaud146.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1170_length_13095_cov_4.399031 1266..2858 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud146.t1.exon1	Gcaud146.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1170_length_13095_cov_4.399031 1266..2858 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud146.t1.stop1	Gcaud146.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1170_length_13095_cov_4.399031 2856..2858 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud146.t1	Gcaud146.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1170_length_13095_cov_4.399031 1266..2858 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1170_length_13095_cov_4.399031:1266..2858+
coding sequence from alignment at NODE_1170_length_13095_cov_4.399031:1266..2858+

mRNA sequence

>Gcaud146.t1 ID=Gcaud146.t1|Name=Gcaud146.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=531bp
MSAGFVFILALLYAVQVWVAHAQPSQNTIERESQAYTFDLFPNVFNAITT
DGVETPIQIRAFFYLNLAVFNAWSNYHPTAVDIFGRSRFKRPAAEHTIEN
KNIAIYYSLFRLYQASPPSFGGDSGIPNFRERMLEQGLDPDDMSLDMTTP
IGIGNREGMDTARLLLMDGWNANGSLSSSDPAYSLPLADYTGYTPVNSPS
KIEFPFRWQPVLESNGVGFFFRQEHVTPYAGQAIAFSQTPEQIERRKVRS
PYRDPDVPLAEAKRKDLRKLRKYARDVLKRSADLTERQRLLAELFDNKVF
AFRTPENPFGSSSIAAAVRFFIIGPVFDLSFDEDVIYGLASNIVTFDATM
AVWKEKVRHDAIRPTGQTMDLLLGEDLVEVWGGPGRDTTRIRPKDWQPLI
RTMPHSEFPSGSACVCEAFIEHALIFTEGRDEFPFNVTFTKGSSKFYPGS
VPAEDVTIPINRLSEWNRLCGQSRLWAGVHFEPSVSAGQRLCKGLGRTAQ
DVIEKLVRGEPALTWLQWLGDDVDRFWESD*

spliced messenger RNA

>Gcaud146.t1 ID=Gcaud146.t1|Name=Gcaud146.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1593bp|location=Sequence derived from alignment at NODE_1170_length_13095_cov_4.399031:1266..2858+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGCCGGCTTCGTTTTCATCCTTGCGCTTCTCTATGCTGTTCAGGT
CTGGGTCGCTCATGCCCAGCCCTCACAGAATACAATTGAACGTGAAAGCC
AGGCGTACACCTTTGATCTGTTCCCCAATGTGTTCAACGCCATCACCACA
GATGGAGTTGAAACCCCAATCCAGATCCGCGCCTTCTTTTATCTCAACCT
CGCCGTCTTCAACGCCTGGAGCAACTATCATCCCACCGCTGTGGATATAT
TTGGTCGCTCTCGTTTTAAGCGCCCTGCCGCCGAACACACCATCGAGAAC
AAAAACATTGCCATCTACTACTCCTTGTTTCGTCTGTACCAAGCTTCACC
CCCCAGCTTTGGTGGCGATTCGGGCATTCCAAACTTCCGTGAGCGAATGC
TGGAGCAAGGACTGGACCCGGATGACATGAGCCTTGACATGACCACCCCG
ATCGGTATTGGAAACCGAGAGGGAATGGATACAGCCCGTCTGTTGTTGAT
GGATGGATGGAACGCCAATGGTTCACTCAGTTCTTCTGATCCGGCTTATT
CCCTGCCCCTAGCCGATTACACAGGGTACACACCGGTGAACTCACCGTCG
AAAATCGAGTTTCCTTTCCGCTGGCAGCCCGTGCTTGAATCGAATGGTGT
CGGCTTTTTCTTCCGCCAGGAGCATGTAACCCCATACGCGGGTCAGGCCA
TAGCGTTCAGCCAAACGCCCGAGCAGATCGAACGTCGTAAGGTGCGGTCG
CCGTATCGGGATCCTGATGTGCCCTTAGCGGAAGCCAAGCGTAAGGATTT
GCGCAAACTGCGTAAATATGCTCGTGATGTACTCAAGCGATCCGCAGACC
TGACGGAAAGGCAAAGACTATTAGCTGAACTGTTTGATAACAAGGTGTTT
GCGTTCCGAACCCCAGAGAATCCGTTTGGTTCTTCGAGTATCGCCGCTGC
AGTACGCTTCTTTATCATTGGACCGGTTTTCGACCTTTCGTTCGATGAGG
ATGTTATTTACGGACTGGCCTCCAATATCGTCACATTTGACGCAACGATG
GCTGTCTGGAAAGAAAAAGTTCGTCATGATGCGATCAGACCTACTGGCCA
GACAATGGATCTGTTACTGGGAGAGGATTTGGTCGAGGTATGGGGAGGAC
CTGGCCGTGATACAACGCGTATTCGCCCCAAGGATTGGCAGCCGTTGATT
CGGACCATGCCCCACAGTGAATTTCCGTCGGGCTCCGCATGTGTGTGCGA
GGCTTTCATTGAACATGCGCTCATCTTCACCGAAGGCCGGGATGAATTCC
CATTCAACGTAACATTCACAAAGGGTTCGAGCAAGTTCTATCCCGGCAGC
GTTCCTGCAGAGGATGTGACTATCCCTATTAACCGTCTTTCAGAATGGAA
TCGTCTTTGCGGTCAATCAAGGCTTTGGGCGGGTGTTCACTTTGAACCAT
CTGTGTCAGCTGGACAGAGACTCTGTAAGGGGCTCGGAAGGACGGCGCAG
GATGTGATTGAGAAGTTGGTTCGTGGTGAACCGGCGCTAACATGGTTGCA
GTGGCTTGGCGATGACGTTGACAGATTTTGGGAGAGCGATTGA

protein sequence of Gcaud146.t1

>Gcaud146.t1 ID=Gcaud146.t1|Name=Gcaud146.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=531bp
MSAGFVFILALLYAVQVWVAHAQPSQNTIERESQAYTFDLFPNVFNAITT
DGVETPIQIRAFFYLNLAVFNAWSNYHPTAVDIFGRSRFKRPAAEHTIEN
KNIAIYYSLFRLYQASPPSFGGDSGIPNFRERMLEQGLDPDDMSLDMTTP
IGIGNREGMDTARLLLMDGWNANGSLSSSDPAYSLPLADYTGYTPVNSPS
KIEFPFRWQPVLESNGVGFFFRQEHVTPYAGQAIAFSQTPEQIERRKVRS
PYRDPDVPLAEAKRKDLRKLRKYARDVLKRSADLTERQRLLAELFDNKVF
AFRTPENPFGSSSIAAAVRFFIIGPVFDLSFDEDVIYGLASNIVTFDATM
AVWKEKVRHDAIRPTGQTMDLLLGEDLVEVWGGPGRDTTRIRPKDWQPLI
RTMPHSEFPSGSACVCEAFIEHALIFTEGRDEFPFNVTFTKGSSKFYPGS
VPAEDVTIPINRLSEWNRLCGQSRLWAGVHFEPSVSAGQRLCKGLGRTAQ
DVIEKLVRGEPALTWLQWLGDDVDRFWESD*

mRNA from alignment at NODE_1170_length_13095_cov_4.399031:1266..2858+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud146.t1 ID=Gcaud146.t1|Name=Gcaud146.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1593bp|location=Sequence derived from alignment at NODE_1170_length_13095_cov_4.399031:1266..2858+ (Gracilaria caudata M_176_S67 male)
ATGAGCGCCGGCTTCGTTTTCATCCTTGCGCTTCTCTATGCTGTTCAGGT
CTGGGTCGCTCATGCCCAGCCCTCACAGAATACAATTGAACGTGAAAGCC
AGGCGTACACCTTTGATCTGTTCCCCAATGTGTTCAACGCCATCACCACA
GATGGAGTTGAAACCCCAATCCAGATCCGCGCCTTCTTTTATCTCAACCT
CGCCGTCTTCAACGCCTGGAGCAACTATCATCCCACCGCTGTGGATATAT
TTGGTCGCTCTCGTTTTAAGCGCCCTGCCGCCGAACACACCATCGAGAAC
AAAAACATTGCCATCTACTACTCCTTGTTTCGTCTGTACCAAGCTTCACC
CCCCAGCTTTGGTGGCGATTCGGGCATTCCAAACTTCCGTGAGCGAATGC
TGGAGCAAGGACTGGACCCGGATGACATGAGCCTTGACATGACCACCCCG
ATCGGTATTGGAAACCGAGAGGGAATGGATACAGCCCGTCTGTTGTTGAT
GGATGGATGGAACGCCAATGGTTCACTCAGTTCTTCTGATCCGGCTTATT
CCCTGCCCCTAGCCGATTACACAGGGTACACACCGGTGAACTCACCGTCG
AAAATCGAGTTTCCTTTCCGCTGGCAGCCCGTGCTTGAATCGAATGGTGT
CGGCTTTTTCTTCCGCCAGGAGCATGTAACCCCATACGCGGGTCAGGCCA
TAGCGTTCAGCCAAACGCCCGAGCAGATCGAACGTCGTAAGGTGCGGTCG
CCGTATCGGGATCCTGATGTGCCCTTAGCGGAAGCCAAGCGTAAGGATTT
GCGCAAACTGCGTAAATATGCTCGTGATGTACTCAAGCGATCCGCAGACC
TGACGGAAAGGCAAAGACTATTAGCTGAACTGTTTGATAACAAGGTGTTT
GCGTTCCGAACCCCAGAGAATCCGTTTGGTTCTTCGAGTATCGCCGCTGC
AGTACGCTTCTTTATCATTGGACCGGTTTTCGACCTTTCGTTCGATGAGG
ATGTTATTTACGGACTGGCCTCCAATATCGTCACATTTGACGCAACGATG
GCTGTCTGGAAAGAAAAAGTTCGTCATGATGCGATCAGACCTACTGGCCA
GACAATGGATCTGTTACTGGGAGAGGATTTGGTCGAGGTATGGGGAGGAC
CTGGCCGTGATACAACGCGTATTCGCCCCAAGGATTGGCAGCCGTTGATT
CGGACCATGCCCCACAGTGAATTTCCGTCGGGCTCCGCATGTGTGTGCGA
GGCTTTCATTGAACATGCGCTCATCTTCACCGAAGGCCGGGATGAATTCC
CATTCAACGTAACATTCACAAAGGGTTCGAGCAAGTTCTATCCCGGCAGC
GTTCCTGCAGAGGATGTGACTATCCCTATTAACCGTCTTTCAGAATGGAA
TCGTCTTTGCGGTCAATCAAGGCTTTGGGCGGGTGTTCACTTTGAACCAT
CTGTGTCAGCTGGACAGAGACTCTGTAAGGGGCTCGGAAGGACGGCGCAG
GATGTGATTGAGAAGTTGGTTCGTGGTGAACCGGCGCTAACATGGTTGCA
GTGGCTTGGCGATGACGTTGACAGATTTTGGGAGAGCGATTGA

Coding sequence (CDS) from alignment at NODE_1170_length_13095_cov_4.399031:1266..2858+

>Gcaud146.t1 ID=Gcaud146.t1|Name=Gcaud146.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1593bp|location=Sequence derived from alignment at NODE_1170_length_13095_cov_4.399031:1266..2858+ (Gracilaria caudata M_176_S67 male)
ATGAGCGCCGGCTTCGTTTTCATCCTTGCGCTTCTCTATGCTGTTCAGGT
CTGGGTCGCTCATGCCCAGCCCTCACAGAATACAATTGAACGTGAAAGCC
AGGCGTACACCTTTGATCTGTTCCCCAATGTGTTCAACGCCATCACCACA
GATGGAGTTGAAACCCCAATCCAGATCCGCGCCTTCTTTTATCTCAACCT
CGCCGTCTTCAACGCCTGGAGCAACTATCATCCCACCGCTGTGGATATAT
TTGGTCGCTCTCGTTTTAAGCGCCCTGCCGCCGAACACACCATCGAGAAC
AAAAACATTGCCATCTACTACTCCTTGTTTCGTCTGTACCAAGCTTCACC
CCCCAGCTTTGGTGGCGATTCGGGCATTCCAAACTTCCGTGAGCGAATGC
TGGAGCAAGGACTGGACCCGGATGACATGAGCCTTGACATGACCACCCCG
ATCGGTATTGGAAACCGAGAGGGAATGGATACAGCCCGTCTGTTGTTGAT
GGATGGATGGAACGCCAATGGTTCACTCAGTTCTTCTGATCCGGCTTATT
CCCTGCCCCTAGCCGATTACACAGGGTACACACCGGTGAACTCACCGTCG
AAAATCGAGTTTCCTTTCCGCTGGCAGCCCGTGCTTGAATCGAATGGTGT
CGGCTTTTTCTTCCGCCAGGAGCATGTAACCCCATACGCGGGTCAGGCCA
TAGCGTTCAGCCAAACGCCCGAGCAGATCGAACGTCGTAAGGTGCGGTCG
CCGTATCGGGATCCTGATGTGCCCTTAGCGGAAGCCAAGCGTAAGGATTT
GCGCAAACTGCGTAAATATGCTCGTGATGTACTCAAGCGATCCGCAGACC
TGACGGAAAGGCAAAGACTATTAGCTGAACTGTTTGATAACAAGGTGTTT
GCGTTCCGAACCCCAGAGAATCCGTTTGGTTCTTCGAGTATCGCCGCTGC
AGTACGCTTCTTTATCATTGGACCGGTTTTCGACCTTTCGTTCGATGAGG
ATGTTATTTACGGACTGGCCTCCAATATCGTCACATTTGACGCAACGATG
GCTGTCTGGAAAGAAAAAGTTCGTCATGATGCGATCAGACCTACTGGCCA
GACAATGGATCTGTTACTGGGAGAGGATTTGGTCGAGGTATGGGGAGGAC
CTGGCCGTGATACAACGCGTATTCGCCCCAAGGATTGGCAGCCGTTGATT
CGGACCATGCCCCACAGTGAATTTCCGTCGGGCTCCGCATGTGTGTGCGA
GGCTTTCATTGAACATGCGCTCATCTTCACCGAAGGCCGGGATGAATTCC
CATTCAACGTAACATTCACAAAGGGTTCGAGCAAGTTCTATCCCGGCAGC
GTTCCTGCAGAGGATGTGACTATCCCTATTAACCGTCTTTCAGAATGGAA
TCGTCTTTGCGGTCAATCAAGGCTTTGGGCGGGTGTTCACTTTGAACCAT
CTGTGTCAGCTGGACAGAGACTCTGTAAGGGGCTCGGAAGGACGGCGCAG
GATGTGATTGAGAAGTTGGTTCGTGGTGAACCGGCGCTAACATGGTTGCA
GTGGCTTGGCGATGACGTTGACAGATTTTGGGAGAGCGATTGA