Gcaud189.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud189.t1
Unique NameGcaud189.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length187
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_658_length_20183_cov_5.262493contigNODE_658_length_20183_cov_5.262493:5451..6011 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud189Gcaud189Gracilaria caudata M_176_S67 malegeneNODE_658_length_20183_cov_5.262493 5451..6011 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud189.t1.CDS1Gcaud189.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_658_length_20183_cov_5.262493 5451..6011 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud189.t1.exon1Gcaud189.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_658_length_20183_cov_5.262493 5451..6011 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud189.t1.stop1Gcaud189.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_658_length_20183_cov_5.262493 6009..6011 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud189.t1Gcaud189.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_658_length_20183_cov_5.262493 5451..6011 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud189.t1 ID=Gcaud189.t1|Name=Gcaud189.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=187bp
IPFPLQIPQPVGPQAAGEAGHGDTTDDEYENERVTSFKNRYGARRNKFKG
DLEEDWTDHVSSFMDYSNLQKINGDSRIPYLHFALAGDALYFFKEEVKGK
ILNWGAVLAVFNSRYASETNREDMSSKLEELHLLKKDNTPHEALDLLVKE
IDRRAPMAHQENRTERRKCNFLRNALQGTAWSQNIL*
back to top

spliced messenger RNA

>Gcaud189.t1 ID=Gcaud189.t1|Name=Gcaud189.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=561bp|location=Sequence derived from alignment at NODE_658_length_20183_cov_5.262493:5451..6011+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATTCCGTTCCCACTTCAGATCCCTCAACCTGTCGGTCCGCAGGCAGCTGG
CGAAGCTGGCCACGGCGATACAACAGACGATGAGTATGAGAACGAGCGTG
TTACTTCCTTCAAAAACCGCTACGGTGCAAGAAGGAACAAGTTCAAGGGA
GATTTAGAAGAAGACTGGACTGATCACGTTTCTTCATTTATGGACTACAG
TAACCTGCAGAAAATCAACGGAGACTCTCGAATCCCGTACTTGCATTTTG
CACTCGCTGGAGATGCACTGTATTTCTTCAAAGAAGAAGTGAAGGGAAAG
ATTCTCAACTGGGGCGCAGTTCTCGCCGTGTTTAACTCTCGCTACGCATC
TGAAACCAACCGTGAAGATATGTCTTCAAAACTCGAGGAGCTGCACCTCT
TAAAAAAAGACAATACACCACATGAGGCATTGGATCTCCTTGTCAAAGAG
ATAGATCGCCGGGCTCCTATGGCACATCAAGAGAATCGGACAGAAAGACG
CAAATGTAACTTCTTGCGTAATGCTCTACAGGGCACTGCATGGTCTCAAA
ATATTTTGTAA
back to top

protein sequence of Gcaud189.t1

>Gcaud189.t1 ID=Gcaud189.t1|Name=Gcaud189.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=187bp
IPFPLQIPQPVGPQAAGEAGHGDTTDDEYENERVTSFKNRYGARRNKFKG
DLEEDWTDHVSSFMDYSNLQKINGDSRIPYLHFALAGDALYFFKEEVKGK
ILNWGAVLAVFNSRYASETNREDMSSKLEELHLLKKDNTPHEALDLLVKE
IDRRAPMAHQENRTERRKCNFLRNALQGTAWSQNIL*
back to top

mRNA from alignment at NODE_658_length_20183_cov_5.262493:5451..6011+

Legend: CDSpolypeptideexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud189.t1 ID=Gcaud189.t1|Name=Gcaud189.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=561bp|location=Sequence derived from alignment at NODE_658_length_20183_cov_5.262493:5451..6011+ (Gracilaria caudata M_176_S67 male)
ATTCCGTTCCCACTTCAGATCCCTCAACCTGTCGGTCCGCAGGCAGCTGG
CGAAGCTGGCCACGGCGATACAACAGACGATGAGTATGAGAACGAGCGTG
TTACTTCCTTCAAAAACCGCTACGGTGCAAGAAGGAACAAGTTCAAGGGA
GATTTAGAAGAAGACTGGACTGATCACGTTTCTTCATTTATGGACTACAG
TAACCTGCAGAAAATCAACGGAGACTCTCGAATCCCGTACTTGCATTTTG
CACTCGCTGGAGATGCACTGTATTTCTTCAAAGAAGAAGTGAAGGGAAAG
ATTCTCAACTGGGGCGCAGTTCTCGCCGTGTTTAACTCTCGCTACGCATC
TGAAACCAACCGTGAAGATATGTCTTCAAAACTCGAGGAGCTGCACCTCT
TAAAAAAAGACAATACACCACATGAGGCATTGGATCTCCTTGTCAAAGAG
ATAGATCGCCGGGCTCCTATGGCACATCAAGAGAATCGGACAGAAAGACG
CAAATGTAACTTCTTGCGTAATGCTCTACAGGGCACTGCATGGTCTCAAA
ATATTTTGTAA
back to top

Coding sequence (CDS) from alignment at NODE_658_length_20183_cov_5.262493:5451..6011+

>Gcaud189.t1 ID=Gcaud189.t1|Name=Gcaud189.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=561bp|location=Sequence derived from alignment at NODE_658_length_20183_cov_5.262493:5451..6011+ (Gracilaria caudata M_176_S67 male)
ATTCCGTTCCCACTTCAGATCCCTCAACCTGTCGGTCCGCAGGCAGCTGG
CGAAGCTGGCCACGGCGATACAACAGACGATGAGTATGAGAACGAGCGTG
TTACTTCCTTCAAAAACCGCTACGGTGCAAGAAGGAACAAGTTCAAGGGA
GATTTAGAAGAAGACTGGACTGATCACGTTTCTTCATTTATGGACTACAG
TAACCTGCAGAAAATCAACGGAGACTCTCGAATCCCGTACTTGCATTTTG
CACTCGCTGGAGATGCACTGTATTTCTTCAAAGAAGAAGTGAAGGGAAAG
ATTCTCAACTGGGGCGCAGTTCTCGCCGTGTTTAACTCTCGCTACGCATC
TGAAACCAACCGTGAAGATATGTCTTCAAAACTCGAGGAGCTGCACCTCT
TAAAAAAAGACAATACACCACATGAGGCATTGGATCTCCTTGTCAAAGAG
ATAGATCGCCGGGCTCCTATGGCACATCAAGAGAATCGGACAGAAAGACG
CAAATGTAACTTCTTGCGTAATGCTCTACAGGGCACTGCATGGTCTCAAA
ATATTTTGTAA
back to top