Gcaud2134.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2134.t1
Unique Name	Gcaud2134.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	460

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_116_length_48691_cov_4.274671	contig	NODE_116_length_48691_cov_4.274671:12268..13647 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005702938.1
Preferred name	SER2
PFAMs	ACT_6,HAD,Hydrolase
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00017
KEGG ko	ko:K01079
KEGG Reaction	R00582
KEGG Pathway	ko00260,ko00680,ko01100,ko01120,ko01130,ko01200,ko01230,map00260,map00680,map01100,map01120,map01130,map01200,map01230
KEGG Module	M00020
GOs	GO:0000287,GO:0003674,GO:0003824,GO:0004647,GO:0005488,GO:0005509,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006082,GO:0006520,GO:0006563,GO:0006564,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009069,GO:0009070,GO:0009987,GO:0016053,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019752,GO:0042578,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0046872,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
Evalue	3.27e-125
EggNOG OGs	COG0560@1\|root,KOG1615@2759\|Eukaryota
EC	3.1.3.3
Description	phosphoserine phosphatase activity
COG category	E
BiGG Reaction	iMM904.YGR208W,iND750.YGR208W
BRITE	ko00000,ko00001,ko00002,ko01000,ko01009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2134	Gcaud2134	Gracilaria caudata M_176_S67 male	gene	NODE_116_length_48691_cov_4.274671 12268..13647 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2134.t1.start1	Gcaud2134.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_116_length_48691_cov_4.274671 12268..12270 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2134.t1.CDS1	Gcaud2134.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_116_length_48691_cov_4.274671 12268..13647 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2134.t1.exon1	Gcaud2134.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_116_length_48691_cov_4.274671 12268..13647 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2134.t1.stop1	Gcaud2134.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_116_length_48691_cov_4.274671 13645..13647 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2134.t1	Gcaud2134.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_116_length_48691_cov_4.274671 12268..13647 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_116_length_48691_cov_4.274671:12268..13647+
coding sequence from alignment at NODE_116_length_48691_cov_4.274671:12268..13647+

mRNA sequence

>Gcaud2134.t1 ID=Gcaud2134.t1|Name=Gcaud2134.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=460bp
MTAEVHNRNETDVAQTRLTATFTGKDERSVASEVIASVALAEARIIDLKQ
TVIQDRITLVIEVEVASCTGAEAHLYKSLLAIAQNFSLTVDFDVATDELP
MRQLQKLELSSTDMFETPQDQQRICVSNGKIIQKLPPTHYVLTLISGDAI
SPTFLTDIASLLADAAFTIEKVTRLSTSGLRCLELMVVSYHALSPNDINQ
LRKQLYALGKTKGIDVALQAESVLRRSKRLVVFDMDSTLIQQEVIDELAR
YAGVYEKVKEITHRAMSGKLDFRESLRERVALLKGTHSSVFQKVIDNLQY
TPGVKLLCKTLKKLGYRLAVISGGFTRITSHVRNELGLDYDYANVLEEKD
GVFTGRTIGPVVNAQRKADLLITIAQQERITLDQVIAIGDGANDLPMLGT
AGLGIAFNAKAAVQEAASFRINHPSLMTVLYLLGFSEHDQEQLHGEGSNQ
SGSVGEASV*

spliced messenger RNA

>Gcaud2134.t1 ID=Gcaud2134.t1|Name=Gcaud2134.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1380bp|location=Sequence derived from alignment at NODE_116_length_48691_cov_4.274671:12268..13647+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAGCCGAAGTTCATAATCGAAATGAGACCGACGTCGCGCAAACGCG
GTTGACAGCTACCTTTACTGGCAAGGACGAACGCAGCGTTGCAAGCGAGG
TTATAGCCTCCGTGGCGCTTGCAGAGGCAAGAATTATCGATCTTAAGCAG
ACTGTCATACAAGACCGTATCACGCTTGTCATCGAAGTAGAAGTAGCGTC
ATGCACCGGCGCTGAAGCGCATCTCTACAAATCTCTACTGGCCATCGCCC
AAAACTTCTCACTCACCGTCGATTTCGATGTTGCAACCGACGAACTGCCG
ATGCGCCAGCTACAAAAGCTTGAGTTGAGTAGCACTGATATGTTTGAAAC
TCCCCAGGATCAGCAGCGCATCTGTGTCAGCAACGGTAAAATCATCCAAA
AGCTACCTCCGACACATTACGTACTAACTCTTATATCCGGAGATGCTATA
TCGCCCACGTTTTTGACGGACATTGCTTCTCTGCTTGCTGATGCGGCGTT
CACGATTGAGAAGGTTACTCGTTTGAGCACGTCTGGTCTACGCTGCTTGG
AGCTGATGGTTGTAAGCTATCACGCGTTGTCCCCAAACGACATAAACCAG
CTGAGAAAACAGCTGTACGCACTGGGAAAAACAAAAGGAATCGATGTGGC
ACTGCAGGCGGAGTCCGTTCTACGAAGGTCGAAGAGATTGGTAGTGTTCG
ATATGGACAGCACGCTAATTCAACAAGAGGTAATTGACGAGTTAGCTCGC
TATGCAGGTGTGTATGAAAAGGTGAAGGAAATCACTCACAGGGCGATGAG
TGGCAAACTGGATTTCCGCGAAAGCCTTCGCGAGCGTGTGGCGCTTCTGA
AGGGAACACATTCTAGCGTGTTCCAGAAGGTGATTGACAACTTGCAATAC
ACGCCAGGGGTCAAGCTGCTTTGCAAGACGCTCAAGAAGTTAGGCTACCG
GTTGGCTGTTATTTCTGGAGGGTTCACGCGAATTACTTCTCATGTGCGGA
ACGAGCTTGGACTGGACTATGATTATGCCAACGTTTTGGAGGAGAAGGAC
GGTGTGTTCACTGGTAGGACGATTGGCCCCGTGGTGAATGCACAGAGAAA
GGCGGACCTGCTGATCACGATTGCTCAGCAGGAGCGAATCACTCTAGATC
AGGTGATTGCCATCGGCGATGGGGCAAATGATTTGCCCATGCTGGGCACG
GCTGGATTGGGAATCGCATTTAACGCAAAGGCGGCTGTGCAAGAGGCGGC
AAGCTTCAGAATCAATCATCCGAGTTTAATGACAGTTTTGTATCTGTTGG
GATTCAGCGAACACGACCAGGAACAGCTGCACGGCGAAGGGAGCAATCAG
TCGGGCTCGGTCGGCGAGGCGTCTGTGTAG

protein sequence of Gcaud2134.t1

>Gcaud2134.t1 ID=Gcaud2134.t1|Name=Gcaud2134.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=460bp
MTAEVHNRNETDVAQTRLTATFTGKDERSVASEVIASVALAEARIIDLKQ
TVIQDRITLVIEVEVASCTGAEAHLYKSLLAIAQNFSLTVDFDVATDELP
MRQLQKLELSSTDMFETPQDQQRICVSNGKIIQKLPPTHYVLTLISGDAI
SPTFLTDIASLLADAAFTIEKVTRLSTSGLRCLELMVVSYHALSPNDINQ
LRKQLYALGKTKGIDVALQAESVLRRSKRLVVFDMDSTLIQQEVIDELAR
YAGVYEKVKEITHRAMSGKLDFRESLRERVALLKGTHSSVFQKVIDNLQY
TPGVKLLCKTLKKLGYRLAVISGGFTRITSHVRNELGLDYDYANVLEEKD
GVFTGRTIGPVVNAQRKADLLITIAQQERITLDQVIAIGDGANDLPMLGT
AGLGIAFNAKAAVQEAASFRINHPSLMTVLYLLGFSEHDQEQLHGEGSNQ
SGSVGEASV*

mRNA from alignment at NODE_116_length_48691_cov_4.274671:12268..13647+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2134.t1 ID=Gcaud2134.t1|Name=Gcaud2134.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1380bp|location=Sequence derived from alignment at NODE_116_length_48691_cov_4.274671:12268..13647+ (Gracilaria caudata M_176_S67 male)
ATGACAGCCGAAGTTCATAATCGAAATGAGACCGACGTCGCGCAAACGCG
GTTGACAGCTACCTTTACTGGCAAGGACGAACGCAGCGTTGCAAGCGAGG
TTATAGCCTCCGTGGCGCTTGCAGAGGCAAGAATTATCGATCTTAAGCAG
ACTGTCATACAAGACCGTATCACGCTTGTCATCGAAGTAGAAGTAGCGTC
ATGCACCGGCGCTGAAGCGCATCTCTACAAATCTCTACTGGCCATCGCCC
AAAACTTCTCACTCACCGTCGATTTCGATGTTGCAACCGACGAACTGCCG
ATGCGCCAGCTACAAAAGCTTGAGTTGAGTAGCACTGATATGTTTGAAAC
TCCCCAGGATCAGCAGCGCATCTGTGTCAGCAACGGTAAAATCATCCAAA
AGCTACCTCCGACACATTACGTACTAACTCTTATATCCGGAGATGCTATA
TCGCCCACGTTTTTGACGGACATTGCTTCTCTGCTTGCTGATGCGGCGTT
CACGATTGAGAAGGTTACTCGTTTGAGCACGTCTGGTCTACGCTGCTTGG
AGCTGATGGTTGTAAGCTATCACGCGTTGTCCCCAAACGACATAAACCAG
CTGAGAAAACAGCTGTACGCACTGGGAAAAACAAAAGGAATCGATGTGGC
ACTGCAGGCGGAGTCCGTTCTACGAAGGTCGAAGAGATTGGTAGTGTTCG
ATATGGACAGCACGCTAATTCAACAAGAGGTAATTGACGAGTTAGCTCGC
TATGCAGGTGTGTATGAAAAGGTGAAGGAAATCACTCACAGGGCGATGAG
TGGCAAACTGGATTTCCGCGAAAGCCTTCGCGAGCGTGTGGCGCTTCTGA
AGGGAACACATTCTAGCGTGTTCCAGAAGGTGATTGACAACTTGCAATAC
ACGCCAGGGGTCAAGCTGCTTTGCAAGACGCTCAAGAAGTTAGGCTACCG
GTTGGCTGTTATTTCTGGAGGGTTCACGCGAATTACTTCTCATGTGCGGA
ACGAGCTTGGACTGGACTATGATTATGCCAACGTTTTGGAGGAGAAGGAC
GGTGTGTTCACTGGTAGGACGATTGGCCCCGTGGTGAATGCACAGAGAAA
GGCGGACCTGCTGATCACGATTGCTCAGCAGGAGCGAATCACTCTAGATC
AGGTGATTGCCATCGGCGATGGGGCAAATGATTTGCCCATGCTGGGCACG
GCTGGATTGGGAATCGCATTTAACGCAAAGGCGGCTGTGCAAGAGGCGGC
AAGCTTCAGAATCAATCATCCGAGTTTAATGACAGTTTTGTATCTGTTGG
GATTCAGCGAACACGACCAGGAACAGCTGCACGGCGAAGGGAGCAATCAG
TCGGGCTCGGTCGGCGAGGCGTCTGTGTAG

Coding sequence (CDS) from alignment at NODE_116_length_48691_cov_4.274671:12268..13647+

>Gcaud2134.t1 ID=Gcaud2134.t1|Name=Gcaud2134.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1380bp|location=Sequence derived from alignment at NODE_116_length_48691_cov_4.274671:12268..13647+ (Gracilaria caudata M_176_S67 male)
ATGACAGCCGAAGTTCATAATCGAAATGAGACCGACGTCGCGCAAACGCG
GTTGACAGCTACCTTTACTGGCAAGGACGAACGCAGCGTTGCAAGCGAGG
TTATAGCCTCCGTGGCGCTTGCAGAGGCAAGAATTATCGATCTTAAGCAG
ACTGTCATACAAGACCGTATCACGCTTGTCATCGAAGTAGAAGTAGCGTC
ATGCACCGGCGCTGAAGCGCATCTCTACAAATCTCTACTGGCCATCGCCC
AAAACTTCTCACTCACCGTCGATTTCGATGTTGCAACCGACGAACTGCCG
ATGCGCCAGCTACAAAAGCTTGAGTTGAGTAGCACTGATATGTTTGAAAC
TCCCCAGGATCAGCAGCGCATCTGTGTCAGCAACGGTAAAATCATCCAAA
AGCTACCTCCGACACATTACGTACTAACTCTTATATCCGGAGATGCTATA
TCGCCCACGTTTTTGACGGACATTGCTTCTCTGCTTGCTGATGCGGCGTT
CACGATTGAGAAGGTTACTCGTTTGAGCACGTCTGGTCTACGCTGCTTGG
AGCTGATGGTTGTAAGCTATCACGCGTTGTCCCCAAACGACATAAACCAG
CTGAGAAAACAGCTGTACGCACTGGGAAAAACAAAAGGAATCGATGTGGC
ACTGCAGGCGGAGTCCGTTCTACGAAGGTCGAAGAGATTGGTAGTGTTCG
ATATGGACAGCACGCTAATTCAACAAGAGGTAATTGACGAGTTAGCTCGC
TATGCAGGTGTGTATGAAAAGGTGAAGGAAATCACTCACAGGGCGATGAG
TGGCAAACTGGATTTCCGCGAAAGCCTTCGCGAGCGTGTGGCGCTTCTGA
AGGGAACACATTCTAGCGTGTTCCAGAAGGTGATTGACAACTTGCAATAC
ACGCCAGGGGTCAAGCTGCTTTGCAAGACGCTCAAGAAGTTAGGCTACCG
GTTGGCTGTTATTTCTGGAGGGTTCACGCGAATTACTTCTCATGTGCGGA
ACGAGCTTGGACTGGACTATGATTATGCCAACGTTTTGGAGGAGAAGGAC
GGTGTGTTCACTGGTAGGACGATTGGCCCCGTGGTGAATGCACAGAGAAA
GGCGGACCTGCTGATCACGATTGCTCAGCAGGAGCGAATCACTCTAGATC
AGGTGATTGCCATCGGCGATGGGGCAAATGATTTGCCCATGCTGGGCACG
GCTGGATTGGGAATCGCATTTAACGCAAAGGCGGCTGTGCAAGAGGCGGC
AAGCTTCAGAATCAATCATCCGAGTTTAATGACAGTTTTGTATCTGTTGG
GATTCAGCGAACACGACCAGGAACAGCTGCACGGCGAAGGGAGCAATCAG
TCGGGCTCGGTCGGCGAGGCGTCTGTGTAG