Gcaud190.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud190.t1
Unique NameGcaud190.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length147
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_658_length_20183_cov_5.262493contigNODE_658_length_20183_cov_5.262493:7927..8367 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud190Gcaud190Gracilaria caudata M_176_S67 malegeneNODE_658_length_20183_cov_5.262493 7927..8367 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud190.t1.stop1Gcaud190.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_658_length_20183_cov_5.262493 7927..7929 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud190.t1.CDS1Gcaud190.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_658_length_20183_cov_5.262493 7927..8367 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud190.t1.exon1Gcaud190.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_658_length_20183_cov_5.262493 7927..8367 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud190.t1.start1Gcaud190.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_658_length_20183_cov_5.262493 8365..8367 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud190.t1Gcaud190.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_658_length_20183_cov_5.262493 7927..8367 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud190.t1 ID=Gcaud190.t1|Name=Gcaud190.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=147bp
MGITSERYHEVWGSLVGGNRKRSDMDYSTTGWSRAVGRHTALISQLEPEL
AAVNREILYVPNATILSLDDDHLRMASRSMLRLTYLQHQKYAKKGLGSVG
NALCSALIPLFIACHFPEKEKTTLHLETACSTPSRSYDGRGTAYDV*
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spliced messenger RNA

>Gcaud190.t1 ID=Gcaud190.t1|Name=Gcaud190.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=441bp|location=Sequence derived from alignment at NODE_658_length_20183_cov_5.262493:7927..8367- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTATTACTAGTGAGAGGTATCATGAAGTATGGGGATCGTTAGTGGG
TGGAAATCGTAAACGATCTGACATGGACTACTCCACCACGGGATGGAGCA
GAGCAGTGGGTCGTCATACAGCACTCATCTCTCAACTTGAGCCTGAACTT
GCGGCAGTCAATCGAGAGATTCTCTATGTGCCCAACGCTACGATTCTCTC
CCTCGATGATGACCACTTGCGAATGGCGTCCAGGTCTATGCTGAGGCTGA
CTTACCTGCAGCATCAAAAATACGCGAAGAAAGGACTTGGCTCTGTAGGT
AATGCCTTGTGCTCTGCGTTGATTCCGTTGTTCATCGCATGTCATTTTCC
CGAAAAGGAAAAAACTACTCTACATCTGGAAACGGCTTGCTCGACTCCTT
CAAGGAGCTACGACGGAAGGGGAACTGCGTATGATGTGTGA
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protein sequence of Gcaud190.t1

>Gcaud190.t1 ID=Gcaud190.t1|Name=Gcaud190.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=147bp
MGITSERYHEVWGSLVGGNRKRSDMDYSTTGWSRAVGRHTALISQLEPEL
AAVNREILYVPNATILSLDDDHLRMASRSMLRLTYLQHQKYAKKGLGSVG
NALCSALIPLFIACHFPEKEKTTLHLETACSTPSRSYDGRGTAYDV*
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mRNA from alignment at NODE_658_length_20183_cov_5.262493:7927..8367-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud190.t1 ID=Gcaud190.t1|Name=Gcaud190.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=441bp|location=Sequence derived from alignment at NODE_658_length_20183_cov_5.262493:7927..8367- (Gracilaria caudata M_176_S67 male)
ATGGGTATTACTAGTGAGAGGTATCATGAAGTATGGGGATCGTTAGTGGG
TGGAAATCGTAAACGATCTGACATGGACTACTCCACCACGGGATGGAGCA
GAGCAGTGGGTCGTCATACAGCACTCATCTCTCAACTTGAGCCTGAACTT
GCGGCAGTCAATCGAGAGATTCTCTATGTGCCCAACGCTACGATTCTCTC
CCTCGATGATGACCACTTGCGAATGGCGTCCAGGTCTATGCTGAGGCTGA
CTTACCTGCAGCATCAAAAATACGCGAAGAAAGGACTTGGCTCTGTAGGT
AATGCCTTGTGCTCTGCGTTGATTCCGTTGTTCATCGCATGTCATTTTCC
CGAAAAGGAAAAAACTACTCTACATCTGGAAACGGCTTGCTCGACTCCTT
CAAGGAGCTACGACGGAAGGGGAACTGCGTATGATGTGTGA
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Coding sequence (CDS) from alignment at NODE_658_length_20183_cov_5.262493:7927..8367-

>Gcaud190.t1 ID=Gcaud190.t1|Name=Gcaud190.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=441bp|location=Sequence derived from alignment at NODE_658_length_20183_cov_5.262493:7927..8367- (Gracilaria caudata M_176_S67 male)
ATGGGTATTACTAGTGAGAGGTATCATGAAGTATGGGGATCGTTAGTGGG
TGGAAATCGTAAACGATCTGACATGGACTACTCCACCACGGGATGGAGCA
GAGCAGTGGGTCGTCATACAGCACTCATCTCTCAACTTGAGCCTGAACTT
GCGGCAGTCAATCGAGAGATTCTCTATGTGCCCAACGCTACGATTCTCTC
CCTCGATGATGACCACTTGCGAATGGCGTCCAGGTCTATGCTGAGGCTGA
CTTACCTGCAGCATCAAAAATACGCGAAGAAAGGACTTGGCTCTGTAGGT
AATGCCTTGTGCTCTGCGTTGATTCCGTTGTTCATCGCATGTCATTTTCC
CGAAAAGGAAAAAACTACTCTACATCTGGAAACGGCTTGCTCGACTCCTT
CAAGGAGCTACGACGGAAGGGGAACTGCGTATGATGTGTGA
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