Gcaud192.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud192.t1
Unique Name	Gcaud192.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	606

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_657_length_20189_cov_4.904866	contig	NODE_657_length_20189_cov_4.904866:7918..9735 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	44056.XP_009033824.1
PFAMs	Sel1
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K07126,ko:K14026
KEGG Pathway	ko04141,map04141
KEGG Module	M00403
Evalue	1.48e-05
EggNOG OGs	COG0790@1\|root,KOG1550@2759\|Eukaryota
Description	ERAD pathway
COG category	T
BRITE	ko00000,ko00001,ko00002

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud192	Gcaud192	Gracilaria caudata M_176_S67 male	gene	NODE_657_length_20189_cov_4.904866 7918..9735 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud192.t1.start1	Gcaud192.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_657_length_20189_cov_4.904866 7918..7920 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud192.t1.CDS1	Gcaud192.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_657_length_20189_cov_4.904866 7918..9735 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud192.t1.exon1	Gcaud192.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_657_length_20189_cov_4.904866 7918..9735 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud192.t1.stop1	Gcaud192.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_657_length_20189_cov_4.904866 9733..9735 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud192.t1	Gcaud192.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_657_length_20189_cov_4.904866 7918..9735 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_657_length_20189_cov_4.904866:7918..9735+
coding sequence from alignment at NODE_657_length_20189_cov_4.904866:7918..9735+

mRNA sequence

>Gcaud192.t1 ID=Gcaud192.t1|Name=Gcaud192.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=606bp
MASFRKHALENARALEQQVLRDGDIDAMIMLGELLLYNENFASQRKRGVQ
MLMRAITQGKSPLAMTRLAVHLYNNRNRQDHRRAVSLLERSLKLKEDSEA
LNQLALCYETGRGVTKNGEVAVQLYERALRLDQNPHIMFSESWAILNTPS
LRAQEKRAIALLKKALHLSPKAYMADSLGYLYHTGNGNLSRCPKKAIKWY
RRAIRISRYAPSMASLADILLENEPRVDNVQKAIRLLEDAIEVEQEQDVD
IMMQLAHTYLAYDMNIERALQLFETAVIRFNSEKARAELLGLWAEGLCSS
GHDHRHIFDFLYDDDMENRHMGSRVLLAEMLWTGTSHLIVKQREAIKCLV
SIPWIGHGALSLMLRHNLNFHPDGEKNARILMKKFNENIDRSNLHVAEAI
ILSESECEEDKLLALESFQTQIASYRHGAWLALPLRMGEFRLPFEGRQEC
ISDTMRRFARWNNIASLNLASLLLEIEGRQREAVTVLEDLMNCELRLVAM
LNLAYILMNNIAGVSSNWTRGVQLLEDAVRETYDVSARAMLANSLAERSD
SDEGDVKRGWEIWQSVAWVLEQDEEELSKVRRLITASSEKKWDLLEQHKQ
EGSVH*

spliced messenger RNA

>Gcaud192.t1 ID=Gcaud192.t1|Name=Gcaud192.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1818bp|location=Sequence derived from alignment at NODE_657_length_20189_cov_4.904866:7918..9735+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
atggcttcctttcgtaagcacgcACTCGAGAATGCTCGTGCGCTCGAGCA
ACAGGTGTTACGTGACGGTGATATCGACGCTATGATTATGTTAGGTGAAT
TGTTGCTCTACAACGAAAACTTTGCATCACAGCGCAAGCGAGGAGTTCAG
ATGCTCATGCGCGCCATCACCCAGGGGAAAAGCCCGCTCGCCATGACTCG
TCTAGCTGTGCATCTTTACAATAATCGGAACCGACAAGATCATCGTCGAG
CCGTATCGCTGCTCGAACGTTCTTTGAAATTGAAAGAGGACAGTGAAGCA
CTCAATCAATTGGCATTATGTTACGAAACTGGCCGTGGTGTTACAAAGAA
TGGCGAAGTTGCGGTGCAGTTGTATGAACGAGCTTTGCGGCTAGACCAGA
ATCCACACATCATGTTCAGTGAGTCCTGGGCCATACTTAACACACCAAGT
CTGCGCGCTCAAGAGAAACGTGCCATAGCACTGCTAAAGAAAGCACTTCA
TCTGTCTCCAAAGGCTTATATGGCGGACTCGTTAGGATACTTGTATCATA
CTGGAAATGGAAATCTCAGCCGGTGTCCTAAGAAGGCAATCAAGTGGTAT
CGTCGGGCAATTCGGATATCTCGTTATGCACCCTCCATGGCCAGTCTGGC
TGATATTCTTTTGGAGAATGAGCCTAGAGTCGACAATGTGCAAAAGGCCA
TTCGTTTACTAGAAGATGCGATAGAAGTAGAGCAAGAGCAAGATGTAGAT
ATCATGATGCAGCTGGCTCACACCTACCTTGCGTATGACATGAATATTGA
GAGAGCTCTTCAACTATTTGAAACCGCAGTGATTCGTTTCAATTCGGAAA
AGGCAAGAGCAGAGCTGCTTGGACTTTGGGCTGAAGGCCTATGTAGCTCT
GGTCATGATCATAGACATATATTTGATTTTCTTTATGATGATGACATGGA
AAACAGACACATGGGCTCCCGTGTGCTTTTGGCAGAGATGTTATGGACCG
GTACAAGCCATCTCATAGTGAAACAGAGAGAAGCCATAAAGTGCTTGGTT
TCGATTCCTTGGATTGGACATGGTGCTCTTTCACTAATGTTGAGACATAA
TCTAAACTTCCACCCAGACGGGGAGAAGAATGCTCGAATACTCATGAAGA
AGTTCAATGAAAACATTGACAGATCAAATCTTCACGTGGCAGAGGCGATT
ATTCTGAGTGAAAGCGAATGTGAAGAAGATAAACTGCTAGCCTTGGAGAG
CTTTCAAACTCAAATAGCCTCTTACCGGCATGGTGCTTGGCTGGCGCTTC
CGCTTCGGATGGGCGAGTTCAGATTACCGTTTGAAGGACGCCAAGAATGT
ATATCAGATACGATGAGAAGGTTCGCAAGGTGGAATAATATTGCTTCTCT
GAATCTGGCTAGCCTTCTACTTGAGATTGAAGGCAGGCAAAGAGAAGCTG
TGACAGTATTGGAGGATCTAATGAACTGTGAGTTGAGGTTGGTCGCAATG
TTGAACCTGGCATACATTCTGATGAACAATATTGCAGGAGTGTCGAGTAA
TTGGACAAGAGGAGTACAACTTTTGGAGGACGCCGTGAGAGAGACGTACG
ACGTTTCTGCTCGCGCGATGTTGGCCAATTCTTTGGCGGAACGATCAGAC
TCGGATGAAGGCGATGTGAAGCGAGGATGGGAAATTTGGCAAAGCGTTGC
CTGGGTGTTGGAGCAAGACGAAGAGGAACTGTCAAAAGTGAGGCGACTAA
TAACAGCTAGCAGCGAGAAGAAATGGGATCTTCTTGAGCAACATAAACAG
GAAGGGAGTGTACATTAA

protein sequence of Gcaud192.t1

>Gcaud192.t1 ID=Gcaud192.t1|Name=Gcaud192.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=606bp
MASFRKHALENARALEQQVLRDGDIDAMIMLGELLLYNENFASQRKRGVQ
MLMRAITQGKSPLAMTRLAVHLYNNRNRQDHRRAVSLLERSLKLKEDSEA
LNQLALCYETGRGVTKNGEVAVQLYERALRLDQNPHIMFSESWAILNTPS
LRAQEKRAIALLKKALHLSPKAYMADSLGYLYHTGNGNLSRCPKKAIKWY
RRAIRISRYAPSMASLADILLENEPRVDNVQKAIRLLEDAIEVEQEQDVD
IMMQLAHTYLAYDMNIERALQLFETAVIRFNSEKARAELLGLWAEGLCSS
GHDHRHIFDFLYDDDMENRHMGSRVLLAEMLWTGTSHLIVKQREAIKCLV
SIPWIGHGALSLMLRHNLNFHPDGEKNARILMKKFNENIDRSNLHVAEAI
ILSESECEEDKLLALESFQTQIASYRHGAWLALPLRMGEFRLPFEGRQEC
ISDTMRRFARWNNIASLNLASLLLEIEGRQREAVTVLEDLMNCELRLVAM
LNLAYILMNNIAGVSSNWTRGVQLLEDAVRETYDVSARAMLANSLAERSD
SDEGDVKRGWEIWQSVAWVLEQDEEELSKVRRLITASSEKKWDLLEQHKQ
EGSVH*

mRNA from alignment at NODE_657_length_20189_cov_4.904866:7918..9735+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud192.t1 ID=Gcaud192.t1|Name=Gcaud192.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1818bp|location=Sequence derived from alignment at NODE_657_length_20189_cov_4.904866:7918..9735+ (Gracilaria caudata M_176_S67 male)
atggcttcctttcgtaagcacgcACTCGAGAATGCTCGTGCGCTCGAGCA
ACAGGTGTTACGTGACGGTGATATCGACGCTATGATTATGTTAGGTGAAT
TGTTGCTCTACAACGAAAACTTTGCATCACAGCGCAAGCGAGGAGTTCAG
ATGCTCATGCGCGCCATCACCCAGGGGAAAAGCCCGCTCGCCATGACTCG
TCTAGCTGTGCATCTTTACAATAATCGGAACCGACAAGATCATCGTCGAG
CCGTATCGCTGCTCGAACGTTCTTTGAAATTGAAAGAGGACAGTGAAGCA
CTCAATCAATTGGCATTATGTTACGAAACTGGCCGTGGTGTTACAAAGAA
TGGCGAAGTTGCGGTGCAGTTGTATGAACGAGCTTTGCGGCTAGACCAGA
ATCCACACATCATGTTCAGTGAGTCCTGGGCCATACTTAACACACCAAGT
CTGCGCGCTCAAGAGAAACGTGCCATAGCACTGCTAAAGAAAGCACTTCA
TCTGTCTCCAAAGGCTTATATGGCGGACTCGTTAGGATACTTGTATCATA
CTGGAAATGGAAATCTCAGCCGGTGTCCTAAGAAGGCAATCAAGTGGTAT
CGTCGGGCAATTCGGATATCTCGTTATGCACCCTCCATGGCCAGTCTGGC
TGATATTCTTTTGGAGAATGAGCCTAGAGTCGACAATGTGCAAAAGGCCA
TTCGTTTACTAGAAGATGCGATAGAAGTAGAGCAAGAGCAAGATGTAGAT
ATCATGATGCAGCTGGCTCACACCTACCTTGCGTATGACATGAATATTGA
GAGAGCTCTTCAACTATTTGAAACCGCAGTGATTCGTTTCAATTCGGAAA
AGGCAAGAGCAGAGCTGCTTGGACTTTGGGCTGAAGGCCTATGTAGCTCT
GGTCATGATCATAGACATATATTTGATTTTCTTTATGATGATGACATGGA
AAACAGACACATGGGCTCCCGTGTGCTTTTGGCAGAGATGTTATGGACCG
GTACAAGCCATCTCATAGTGAAACAGAGAGAAGCCATAAAGTGCTTGGTT
TCGATTCCTTGGATTGGACATGGTGCTCTTTCACTAATGTTGAGACATAA
TCTAAACTTCCACCCAGACGGGGAGAAGAATGCTCGAATACTCATGAAGA
AGTTCAATGAAAACATTGACAGATCAAATCTTCACGTGGCAGAGGCGATT
ATTCTGAGTGAAAGCGAATGTGAAGAAGATAAACTGCTAGCCTTGGAGAG
CTTTCAAACTCAAATAGCCTCTTACCGGCATGGTGCTTGGCTGGCGCTTC
CGCTTCGGATGGGCGAGTTCAGATTACCGTTTGAAGGACGCCAAGAATGT
ATATCAGATACGATGAGAAGGTTCGCAAGGTGGAATAATATTGCTTCTCT
GAATCTGGCTAGCCTTCTACTTGAGATTGAAGGCAGGCAAAGAGAAGCTG
TGACAGTATTGGAGGATCTAATGAACTGTGAGTTGAGGTTGGTCGCAATG
TTGAACCTGGCATACATTCTGATGAACAATATTGCAGGAGTGTCGAGTAA
TTGGACAAGAGGAGTACAACTTTTGGAGGACGCCGTGAGAGAGACGTACG
ACGTTTCTGCTCGCGCGATGTTGGCCAATTCTTTGGCGGAACGATCAGAC
TCGGATGAAGGCGATGTGAAGCGAGGATGGGAAATTTGGCAAAGCGTTGC
CTGGGTGTTGGAGCAAGACGAAGAGGAACTGTCAAAAGTGAGGCGACTAA
TAACAGCTAGCAGCGAGAAGAAATGGGATCTTCTTGAGCAACATAAACAG
GAAGGGAGTGTACATTAA

Coding sequence (CDS) from alignment at NODE_657_length_20189_cov_4.904866:7918..9735+

>Gcaud192.t1 ID=Gcaud192.t1|Name=Gcaud192.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1818bp|location=Sequence derived from alignment at NODE_657_length_20189_cov_4.904866:7918..9735+ (Gracilaria caudata M_176_S67 male)
atggcttcctttcgtaagcacgcACTCGAGAATGCTCGTGCGCTCGAGCA
ACAGGTGTTACGTGACGGTGATATCGACGCTATGATTATGTTAGGTGAAT
TGTTGCTCTACAACGAAAACTTTGCATCACAGCGCAAGCGAGGAGTTCAG
ATGCTCATGCGCGCCATCACCCAGGGGAAAAGCCCGCTCGCCATGACTCG
TCTAGCTGTGCATCTTTACAATAATCGGAACCGACAAGATCATCGTCGAG
CCGTATCGCTGCTCGAACGTTCTTTGAAATTGAAAGAGGACAGTGAAGCA
CTCAATCAATTGGCATTATGTTACGAAACTGGCCGTGGTGTTACAAAGAA
TGGCGAAGTTGCGGTGCAGTTGTATGAACGAGCTTTGCGGCTAGACCAGA
ATCCACACATCATGTTCAGTGAGTCCTGGGCCATACTTAACACACCAAGT
CTGCGCGCTCAAGAGAAACGTGCCATAGCACTGCTAAAGAAAGCACTTCA
TCTGTCTCCAAAGGCTTATATGGCGGACTCGTTAGGATACTTGTATCATA
CTGGAAATGGAAATCTCAGCCGGTGTCCTAAGAAGGCAATCAAGTGGTAT
CGTCGGGCAATTCGGATATCTCGTTATGCACCCTCCATGGCCAGTCTGGC
TGATATTCTTTTGGAGAATGAGCCTAGAGTCGACAATGTGCAAAAGGCCA
TTCGTTTACTAGAAGATGCGATAGAAGTAGAGCAAGAGCAAGATGTAGAT
ATCATGATGCAGCTGGCTCACACCTACCTTGCGTATGACATGAATATTGA
GAGAGCTCTTCAACTATTTGAAACCGCAGTGATTCGTTTCAATTCGGAAA
AGGCAAGAGCAGAGCTGCTTGGACTTTGGGCTGAAGGCCTATGTAGCTCT
GGTCATGATCATAGACATATATTTGATTTTCTTTATGATGATGACATGGA
AAACAGACACATGGGCTCCCGTGTGCTTTTGGCAGAGATGTTATGGACCG
GTACAAGCCATCTCATAGTGAAACAGAGAGAAGCCATAAAGTGCTTGGTT
TCGATTCCTTGGATTGGACATGGTGCTCTTTCACTAATGTTGAGACATAA
TCTAAACTTCCACCCAGACGGGGAGAAGAATGCTCGAATACTCATGAAGA
AGTTCAATGAAAACATTGACAGATCAAATCTTCACGTGGCAGAGGCGATT
ATTCTGAGTGAAAGCGAATGTGAAGAAGATAAACTGCTAGCCTTGGAGAG
CTTTCAAACTCAAATAGCCTCTTACCGGCATGGTGCTTGGCTGGCGCTTC
CGCTTCGGATGGGCGAGTTCAGATTACCGTTTGAAGGACGCCAAGAATGT
ATATCAGATACGATGAGAAGGTTCGCAAGGTGGAATAATATTGCTTCTCT
GAATCTGGCTAGCCTTCTACTTGAGATTGAAGGCAGGCAAAGAGAAGCTG
TGACAGTATTGGAGGATCTAATGAACTGTGAGTTGAGGTTGGTCGCAATG
TTGAACCTGGCATACATTCTGATGAACAATATTGCAGGAGTGTCGAGTAA
TTGGACAAGAGGAGTACAACTTTTGGAGGACGCCGTGAGAGAGACGTACG
ACGTTTCTGCTCGCGCGATGTTGGCCAATTCTTTGGCGGAACGATCAGAC
TCGGATGAAGGCGATGTGAAGCGAGGATGGGAAATTTGGCAAAGCGTTGC
CTGGGTGTTGGAGCAAGACGAAGAGGAACTGTCAAAAGTGAGGCGACTAA
TAACAGCTAGCAGCGAGAAGAAATGGGATCTTCTTGAGCAACATAAACAG
GAAGGGAGTGTACATTAA