Gcaud1743.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1743.t1
Unique NameGcaud1743.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length197
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_6561_length_1144_cov_4.581197contigNODE_6561_length_1144_cov_4.581197:2..592 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7955.ENSDARP00000122972
Preferred namePNKP
PFAMsAAA_33,PNK3P
Max annot lvl33208|Metazoa
KEGG koko:K08073
GOsGO:0000166,GO:0000718,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003824,GO:0004518,GO:0004519,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006289,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009117,GO:0009123,GO:0009165,GO:0009314,GO:0009628,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010638,GO:0010835,GO:0010836,GO:0016301,GO:0016310,GO:0016311,GO:0016740,GO:0016772,GO:0016773,GO:0016776,GO:0016787,GO:0016788,GO:0016791,GO:0017076,GO:0018130,GO:0019205,GO:0019219,GO:0019222,GO:0019438,GO:0019637,GO:0030554,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031400,GO:0031974,GO:0031981,GO:0032204,GO:0032206,GO:0032210,GO:0032212,GO:0032268,GO:0032269,GO:0032553,GO:0032555,GO:0032559,GO:0033043,GO:0033044,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0035639,GO:0036094,GO:0042578,GO:0042769,GO:0043085,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044281,GO:0044349,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045935,GO:0046403,GO:0046404,GO:0046483,GO:0046939,GO:0046940,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050145,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051246,GO:0051248,GO:0051338,GO:0051347,GO:0051606,GO:0051716,GO:0051731,GO:0051733,GO:0051734,GO:0051972,GO:0051973,GO:0055086,GO:0060255,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0071704,GO:0080090,GO:0090304,GO:0090305,GO:0090407,GO:0097159,GO:0097367,GO:0098501,GO:0098502,GO:0098503,GO:0098504,GO:0098506,GO:0098518,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1904353,GO:1904355,GO:1904356,GO:1904358,GO:2000112,GO:2000278,GO:2000573,GO:2001252
Evalue1.24e-31
EggNOG OGsCOG0241@1|root,KOG2134@2759|Eukaryota,38C15@33154|Opisthokonta,3B9QB@33208|Metazoa,3CT0X@33213|Bilateria,4887T@7711|Chordata,492K7@7742|Vertebrata,49RYW@7898|Actinopterygii
EC2.7.1.78,3.1.3.32
DescriptionPolynucleotide kinase 3'-phosphatase
COG categoryL
BRITEko00000,ko01000,ko01009,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1743Gcaud1743Gracilaria caudata M_176_S67 malegeneNODE_6561_length_1144_cov_4.581197 2..592 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1743.t1.CDS1Gcaud1743.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_6561_length_1144_cov_4.581197 2..592 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1743.t1.exon1Gcaud1743.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_6561_length_1144_cov_4.581197 2..592 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1743.t1.start1Gcaud1743.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_6561_length_1144_cov_4.581197 590..592 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1743.t1Gcaud1743.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_6561_length_1144_cov_4.581197 2..592 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1743.t1 ID=Gcaud1743.t1|Name=Gcaud1743.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=197bp
MPTQQPLQANKRLRQSTLNAMAKIAEGSDAKRARRSEPLREGVWLDSVKG
LMRYEPSSWKNENSPFQSANALKIAAFDLDSTLITTKSRTKFPKSPNDWR
LLNAQVQPMIAALAEDGYVLVIFTNQAGVSNGRIGESFVKSRVDGILAAL
KVDIGVFVATAKDNYRKPATGMWEEFVQLIGSVARIDAQRSFYVGDA
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spliced messenger RNA

>Gcaud1743.t1 ID=Gcaud1743.t1|Name=Gcaud1743.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=591bp|location=Sequence derived from alignment at NODE_6561_length_1144_cov_4.581197:2..592- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGACGCAACAGCCTCTGCAGGCCAACAAACGTCTGCGCCAGTCCAC
GCTCAACGCGATGGCAAAGATCGCCGAAGGTTCCGATGCAAAGCGTGCAC
GTCGTTCCGAACCGCTGCGAGAGGGCGTGTGGTTGGATTCGGTCAAGGGG
CTCATGCGATACGAACCCAGTTCGTGGAAGAATGAGAACAGCCCGTTTCA
AAGCGCCAACGCGTTGAAGATCGCCGCGTTCGACCTCGACAGCACGCTCA
TCACCACCAAATCGCGCACCAAGTTCCCGAAGAGTCCCAACGACTGGCGT
CTGTTAAATGCGCAGGTGCAGCCTATGATCGCCGCGCTGGCTGAGGACGG
CTACGTGCTGGTCATTTTTACCAATCAAGCGGGCGTGAGCAACGGGCGTA
TTGGCGAATCGTTTGTCAAGTCGCGTGTGGATGGCATCTTGGCCGCGCTC
AAAGTGGACATTGGCGTGTTTGTGGCCACCGCAAAGGACAATTATCGCAA
GCCAGCCACCGGCATGTGGGAGGAGTTCGTGCAGCTCATCGGCTCTGTAG
CTCGCATCGACGCGCAACGCTCTTTTTACGTGGGTGACGCA
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protein sequence of Gcaud1743.t1

>Gcaud1743.t1 ID=Gcaud1743.t1|Name=Gcaud1743.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=197bp
MPTQQPLQANKRLRQSTLNAMAKIAEGSDAKRARRSEPLREGVWLDSVKG
LMRYEPSSWKNENSPFQSANALKIAAFDLDSTLITTKSRTKFPKSPNDWR
LLNAQVQPMIAALAEDGYVLVIFTNQAGVSNGRIGESFVKSRVDGILAAL
KVDIGVFVATAKDNYRKPATGMWEEFVQLIGSVARIDAQRSFYVGDA
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mRNA from alignment at NODE_6561_length_1144_cov_4.581197:2..592-

Legend: CDSpolypeptideexonstart_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1743.t1 ID=Gcaud1743.t1|Name=Gcaud1743.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=591bp|location=Sequence derived from alignment at NODE_6561_length_1144_cov_4.581197:2..592- (Gracilaria caudata M_176_S67 male)
ATGCCGACGCAACAGCCTCTGCAGGCCAACAAACGTCTGCGCCAGTCCAC
GCTCAACGCGATGGCAAAGATCGCCGAAGGTTCCGATGCAAAGCGTGCAC
GTCGTTCCGAACCGCTGCGAGAGGGCGTGTGGTTGGATTCGGTCAAGGGG
CTCATGCGATACGAACCCAGTTCGTGGAAGAATGAGAACAGCCCGTTTCA
AAGCGCCAACGCGTTGAAGATCGCCGCGTTCGACCTCGACAGCACGCTCA
TCACCACCAAATCGCGCACCAAGTTCCCGAAGAGTCCCAACGACTGGCGT
CTGTTAAATGCGCAGGTGCAGCCTATGATCGCCGCGCTGGCTGAGGACGG
CTACGTGCTGGTCATTTTTACCAATCAAGCGGGCGTGAGCAACGGGCGTA
TTGGCGAATCGTTTGTCAAGTCGCGTGTGGATGGCATCTTGGCCGCGCTC
AAAGTGGACATTGGCGTGTTTGTGGCCACCGCAAAGGACAATTATCGCAA
GCCAGCCACCGGCATGTGGGAGGAGTTCGTGCAGCTCATCGGCTCTGTAG
CTCGCATCGACGCGCAACGCTCTTTTTACGTGGGTGACGCA
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Coding sequence (CDS) from alignment at NODE_6561_length_1144_cov_4.581197:2..592-

>Gcaud1743.t1 ID=Gcaud1743.t1|Name=Gcaud1743.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=591bp|location=Sequence derived from alignment at NODE_6561_length_1144_cov_4.581197:2..592- (Gracilaria caudata M_176_S67 male)
ATGCCGACGCAACAGCCTCTGCAGGCCAACAAACGTCTGCGCCAGTCCAC
GCTCAACGCGATGGCAAAGATCGCCGAAGGTTCCGATGCAAAGCGTGCAC
GTCGTTCCGAACCGCTGCGAGAGGGCGTGTGGTTGGATTCGGTCAAGGGG
CTCATGCGATACGAACCCAGTTCGTGGAAGAATGAGAACAGCCCGTTTCA
AAGCGCCAACGCGTTGAAGATCGCCGCGTTCGACCTCGACAGCACGCTCA
TCACCACCAAATCGCGCACCAAGTTCCCGAAGAGTCCCAACGACTGGCGT
CTGTTAAATGCGCAGGTGCAGCCTATGATCGCCGCGCTGGCTGAGGACGG
CTACGTGCTGGTCATTTTTACCAATCAAGCGGGCGTGAGCAACGGGCGTA
TTGGCGAATCGTTTGTCAAGTCGCGTGTGGATGGCATCTTGGCCGCGCTC
AAAGTGGACATTGGCGTGTTTGTGGCCACCGCAAAGGACAATTATCGCAA
GCCAGCCACCGGCATGTGGGAGGAGTTCGTGCAGCTCATCGGCTCTGTAG
CTCGCATCGACGCGCAACGCTCTTTTTACGTGGGTGACGCA
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