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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 130081.XP_005707295.1 |
| Preferred name | TK |
| PFAMs | Transket_pyr,Transketolase_C,Transketolase_N |
| Max annot lvl | 2759|Eukaryota |
| KEGG rclass | RC00032,RC00226,RC00571,RC01560 |
| KEGG ko | ko:K00615,ko:K01662 |
| KEGG Reaction | R01067,R01641,R01830,R05636,R06590 |
| KEGG Pathway | ko00030,ko00710,ko00730,ko00900,ko01051,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00710,map00730,map00900,map01051,map01100,map01110,map01120,map01130,map01200,map01230 |
| KEGG Module | M00004,M00007,M00096,M00165,M00167 |
| GOs | GO:0003674,GO:0003824,GO:0004802,GO:0005488,GO:0005509,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006950,GO:0006970,GO:0008150,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009628,GO:0009651,GO:0009941,GO:0010035,GO:0010038,GO:0016020,GO:0016740,GO:0016744,GO:0030145,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0034357,GO:0042221,GO:0042651,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0046686,GO:0046872,GO:0046914,GO:0050896,GO:0050897,GO:0055035 |
| Evalue | 4.35e-256 |
| EggNOG OGs | COG0021@1|root,KOG0523@2759|Eukaryota |
| EC | 2.2.1.1,2.2.1.7 |
| Description | transketolase activity |
| COG category | G |
| BRITE | ko00000,ko00001,ko00002,ko01000 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud2142.t1.start1 | Gcaud2142.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_116_length_48691_cov_4.274671 33483..33485 + |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud2142.t1.intron1 | Gcaud2142.t1.intron1 | Gracilaria caudata M_176_S67 male | intron | NODE_116_length_48691_cov_4.274671 35017..35077 + |
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud2142.t1.stop1 | Gcaud2142.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_116_length_48691_cov_4.274671 35755..35757 + |
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud2142.t1 ID=Gcaud2142.t1|Name=Gcaud2142.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=738bp MTLPCVDSSTTTVDKDLLDRKPLLCNTSNVSLESVYPLEPSVRGSSSVSS HEELAADECILSNYTTSEQLALANLCVNSIRFLCIDAINNASSGHPGVCM GMAAAAFVLFDNHMKFNPSNPNWLNRDRFVLSAGHGSMLLYSLLYLCGYS SVSLEDIKQFRQLHSTTPGHPECTETAGVEVCTGPLGQGISNAVGIAIAE AHVASVYNRPGLPVVDNYTFCIAGDGCMMEGISAEACSLAGHLQLGKLIV LYDDNHISIDGSTDLAFTEDVGQRFEAYGWQVIHVKDGSTDVAAIDRAII AAKKCSNKPTLIKVSTVIGYGAPNIQNTAKAHGAALGTDETDAARRALKY EYEPFDIPAPALEHLRRKVETGASQESSWWSILEEYKTTFPELHEQLYKQ VTDHELSDVVTETLRKTAFSLRGKSQATRKHSKAVLNAIAPLVPNLVGGS ADTSPSTLTDLDCSEDFTSECRTGRIIRFGVREHAMGAISNGMSLAGYNL YPFCSTFFVFTDYMRAAMRMASLSETGTIFVMTHDSIGLGEDGPSHQPIE HLASFRAMPNHNIWRPADGVETAAAYASALVSRECPSTIVLSRQTTNALQ GTDFDKARRGGYVVYETANERTDGVLIATGSEVFAAVSAAKKLELDGFGV RVVSLPCWEVFAQQGKHYRKKVINVGRELCVAVEAGSQFGWERYADWFVC VDEFGKSGKGAEVKELMGICEDRIVERFMKMIANCEE* back to topspliced messenger RNA >Gcaud2142.t1 ID=Gcaud2142.t1|Name=Gcaud2142.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2214bp|location=Sequence derived from alignment at NODE_116_length_48691_cov_4.274671:33483..35757+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
ATGACACTTCCCTGCGTAGACTCCTCTACTACCACCGTCGACAAAGACCT TCTTGACCGCAAGCCATTGCTCTGTAACACTTCAAACGTATCATTGGAAT CCGTCTATCCTCTTGAACCTTCTGTTAGAGGTTCATCTTCGGTCTCGTCT CATGAGGAGCTTGCCGCGGACGAATGCATTCTGTCAAACTATACAACATC GGAACAATTGGCGTTGGCGAACTTGTGTGTAAATTCTATTCGTTTTCTAT GCATCGATGCCATCAATAATGCGAGCAGTGGTCACCCAGGGGTGTGCATG GGGATGGCAGCAGCTGCGTTTGTACTTTTTGACAATCATATGAAGTTCAA TCCTTCGAATCCCAACTGGCTCAACAGAGACAGGTTTGTTTTATCGGCAG GGCATGGTTCTATGCTTTTGTATTCCTTACTGTACCTCTGTGGATATTCG TCTGTGTCGCTTGAAGACATCAAACAATTTCGCCAGCTCCACTCCACCAC ACCAGGGCACCCTGAATGCACCGAGACAGCGGGGGTCGAAGTGTGTACTG GTCCGCTGGGACAGGGCATCTCCAATGCGGTTGGAATTGCGATTGCCGAA GCTCACGTCGCATCTGTTTACAATCGACCCGGCTTACCAGTTGTGGATAA CTACACCTTCTGCATAGCTGGAGATGGTTGCATGATGGAAGGAATATCTG CAGAAGCTTGTTCTTTGGCCGGCCATTTACAGTTAGGAAAGCTCATCGTT CTTTACGATGATAATCATATTTCCATAGATGGTTCCACAGATCTTGCCTT CACGGAAGACGTAGGCCAGCGCTTTGAAGCTTATGGTTGGCAAGTGATCC ACGTCAAAGACGGAAGCACGGATGTCGCTGCTATCGACAGAGCAATAATA GCCGCCAAGAAATGCTCCAACAAACCCACTCTAATCAAAGTGAGCACTGT GATTGGATATGGTGCGCCCAATATACAGAACACGGCAAAAGCACATGGCG CAGCGCTTGGAACGGACGAAACAGACGCTGCTCGGAGGGCTTTGAAGTAT GAGTATGAACCTTTTGATATTCCCGCTCCTGCCTTAGAGCATCTACGGCG AAAGGTAGAGACCGGAGCGTCTCAAGAGTCCTCCTGGTGGTCGATTCTTG AGGAGTACAAAACCACCTTCCCCGAACTCCATGAACAATTGTACAAGCAA GTGACAGATCATGAACTATCAGACGTTGTAACTGAAACGTTGCGCAAGAC AGCATTTTCGCTTCGAGGCAAGAGTCAGGCAACTCGAAAGCACTCCAAAG CCGTTCTAAATGCAATCGCCCCGTTGGTACCGAATTTGGTAGGTGGTAGT GCGGATACGAGCCCTTCAACATTGACAGATCTGGACTGTTCCGAAGATTT CACCTCTGAATGCAGAACGGGAAGAATCATTCGTTTTGGCGTGCGTGAAC ATGCAATGGGGGCGATCAGCAATGGAATGAGTCTAGCAGGATACAATTTG TACCCTTTCTGCTCAACATTCTTCGTATTCACAGACTACATGCGAGCTGC AATGAGAATGGCGTCTCTTAGCGAAACAGGAACTATTTTCGTTATGACTC ATGATTCAATCGGTCTGGGAGAAGATGGCCCTTCTCATCAACCAATTGAG CATTTAGCATCTTTCCGAGCAATGCCGAATCATAACATATGGCGCCCGGC TGATGGGGTGGAAACTGCAGCTGCGTACGCCAGTGCGCTTGTGTCACGTG AATGCCCGAGTACAATCGTTTTATCTAGGCAAACGACCAATGCTTTACAA GGCACGGACTTTGATAAGGCTCGGAGAGGTGGATATGTCGTTTACGAGAC CGCCAATGAAAGAACCGATGGCGTCTTGATCGCAACTGGATCGGAGGTAT TTGCAGCTGTGTCTGCGGCGAAGAAACTGGAGCTGGATGGGTTTGGAGTA CGTGTGGTTTCCCTTCCATGTTGGGAAGTATTTGCTCAGCAGGGAAAGCA CTACCGCAAAAAGGTGATCAACGTTGGGCGAGAATTGTGCGTTGCCGTGG AAGCTGGAAGTCAATTCGGTTGGGAAAGATACGCAGACTGGTTTGTGTGC GTAGATGAGTTTGGAAAGAGTGGAAAAGGGGCAGAGGTGAAAGAGCTAAT GGGTATTTGTGAAGACCGTATTGTCGAACGCTTCATGAAGATGATTGCAA ACTGTGAGGAGTGA back to topprotein sequence of Gcaud2142.t1 >Gcaud2142.t1 ID=Gcaud2142.t1|Name=Gcaud2142.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=738bp
MTLPCVDSSTTTVDKDLLDRKPLLCNTSNVSLESVYPLEPSVRGSSSVSS HEELAADECILSNYTTSEQLALANLCVNSIRFLCIDAINNASSGHPGVCM GMAAAAFVLFDNHMKFNPSNPNWLNRDRFVLSAGHGSMLLYSLLYLCGYS SVSLEDIKQFRQLHSTTPGHPECTETAGVEVCTGPLGQGISNAVGIAIAE AHVASVYNRPGLPVVDNYTFCIAGDGCMMEGISAEACSLAGHLQLGKLIV LYDDNHISIDGSTDLAFTEDVGQRFEAYGWQVIHVKDGSTDVAAIDRAII AAKKCSNKPTLIKVSTVIGYGAPNIQNTAKAHGAALGTDETDAARRALKY EYEPFDIPAPALEHLRRKVETGASQESSWWSILEEYKTTFPELHEQLYKQ VTDHELSDVVTETLRKTAFSLRGKSQATRKHSKAVLNAIAPLVPNLVGGS ADTSPSTLTDLDCSEDFTSECRTGRIIRFGVREHAMGAISNGMSLAGYNL YPFCSTFFVFTDYMRAAMRMASLSETGTIFVMTHDSIGLGEDGPSHQPIE HLASFRAMPNHNIWRPADGVETAAAYASALVSRECPSTIVLSRQTTNALQ GTDFDKARRGGYVVYETANERTDGVLIATGSEVFAAVSAAKKLELDGFGV RVVSLPCWEVFAQQGKHYRKKVINVGRELCVAVEAGSQFGWERYADWFVC VDEFGKSGKGAEVKELMGICEDRIVERFMKMIANCEE* back to topmRNA from alignment at NODE_116_length_48691_cov_4.274671:33483..35757+ Legend: polypeptidestart_codonCDSexonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud2142.t1 ID=Gcaud2142.t1|Name=Gcaud2142.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2275bp|location=Sequence derived from alignment at NODE_116_length_48691_cov_4.274671:33483..35757+ (Gracilaria caudata M_176_S67 male) ATGACACTTCCCTGCGTAGACTCCTCTACTACCACCGTCGACAAAGACCT
TCTTGACCGCAAGCCATTGCTCTGTAACACTTCAAACGTATCATTGGAAT
CCGTCTATCCTCTTGAACCTTCTGTTAGAGGTTCATCTTCGGTCTCGTCT
CATGAGGAGCTTGCCGCGGACGAATGCATTCTGTCAAACTATACAACATC
GGAACAATTGGCGTTGGCGAACTTGTGTGTAAATTCTATTCGTTTTCTAT
GCATCGATGCCATCAATAATGCGAGCAGTGGTCACCCAGGGGTGTGCATG
GGGATGGCAGCAGCTGCGTTTGTACTTTTTGACAATCATATGAAGTTCAA
TCCTTCGAATCCCAACTGGCTCAACAGAGACAGGTTTGTTTTATCGGCAG
GGCATGGTTCTATGCTTTTGTATTCCTTACTGTACCTCTGTGGATATTCG
TCTGTGTCGCTTGAAGACATCAAACAATTTCGCCAGCTCCACTCCACCAC
ACCAGGGCACCCTGAATGCACCGAGACAGCGGGGGTCGAAGTGTGTACTG
GTCCGCTGGGACAGGGCATCTCCAATGCGGTTGGAATTGCGATTGCCGAA
GCTCACGTCGCATCTGTTTACAATCGACCCGGCTTACCAGTTGTGGATAA
CTACACCTTCTGCATAGCTGGAGATGGTTGCATGATGGAAGGAATATCTG
CAGAAGCTTGTTCTTTGGCCGGCCATTTACAGTTAGGAAAGCTCATCGTT
CTTTACGATGATAATCATATTTCCATAGATGGTTCCACAGATCTTGCCTT
CACGGAAGACGTAGGCCAGCGCTTTGAAGCTTATGGTTGGCAAGTGATCC
ACGTCAAAGACGGAAGCACGGATGTCGCTGCTATCGACAGAGCAATAATA
GCCGCCAAGAAATGCTCCAACAAACCCACTCTAATCAAAGTGAGCACTGT
GATTGGATATGGTGCGCCCAATATACAGAACACGGCAAAAGCACATGGCG
CAGCGCTTGGAACGGACGAAACAGACGCTGCTCGGAGGGCTTTGAAGTAT
GAGTATGAACCTTTTGATATTCCCGCTCCTGCCTTAGAGCATCTACGGCG
AAAGGTAGAGACCGGAGCGTCTCAAGAGTCCTCCTGGTGGTCGATTCTTG
AGGAGTACAAAACCACCTTCCCCGAACTCCATGAACAATTGTACAAGCAA
GTGACAGATCATGAACTATCAGACGTTGTAACTGAAACGTTGCGCAAGAC
AGCATTTTCGCTTCGAGGCAAGAGTCAGGCAACTCGAAAGCACTCCAAAG
CCGTTCTAAATGCAATCGCCCCGTTGGTACCGAATTTGGTAGGTGGTAGT
GCGGATACGAGCCCTTCAACATTGACAGATCTGGACTGTTCCGAAGATTT
CACCTCTGAATGCAGAACGGGAAGAATCATTCGTTTTGGCGTGCGTGAAC
ATGCAATGGGGGCGATCAGCAATGGAATGAGTCTAGCAGGATACAATTTG
TACCCTTTCTGCTCAACATTCTTCGTATTCACAGGTATGTCCTTCCCCGC
TTGTCCATCGACTACAGTAGAAATTCTTTCTAACACACTCTTCAGACTAC
ATGCGAGCTGCAATGAGAATGGCGTCTCTTAGCGAAACAGGAACTATTTT
CGTTATGACTCATGATTCAATCGGTCTGGGAGAAGATGGCCCTTCTCATC
AACCAATTGAGCATTTAGCATCTTTCCGAGCAATGCCGAATCATAACATA
TGGCGCCCGGCTGATGGGGTGGAAACTGCAGCTGCGTACGCCAGTGCGCT
TGTGTCACGTGAATGCCCGAGTACAATCGTTTTATCTAGGCAAACGACCA
ATGCTTTACAAGGCACGGACTTTGATAAGGCTCGGAGAGGTGGATATGTC
GTTTACGAGACCGCCAATGAAAGAACCGATGGCGTCTTGATCGCAACTGG
ATCGGAGGTATTTGCAGCTGTGTCTGCGGCGAAGAAACTGGAGCTGGATG
GGTTTGGAGTACGTGTGGTTTCCCTTCCATGTTGGGAAGTATTTGCTCAG
CAGGGAAAGCACTACCGCAAAAAGGTGATCAACGTTGGGCGAGAATTGTG
CGTTGCCGTGGAAGCTGGAAGTCAATTCGGTTGGGAAAGATACGCAGACT
GGTTTGTGTGCGTAGATGAGTTTGGAAAGAGTGGAAAAGGGGCAGAGGTG
AAAGAGCTAATGGGTATTTGTGAAGACCGTATTGTCGAACGCTTCATGAA
GATGATTGCAAACTGTGAGGAGTGA back to topCoding sequence (CDS) from alignment at NODE_116_length_48691_cov_4.274671:33483..35757+ >Gcaud2142.t1 ID=Gcaud2142.t1|Name=Gcaud2142.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2214bp|location=Sequence derived from alignment at NODE_116_length_48691_cov_4.274671:33483..35757+ (Gracilaria caudata M_176_S67 male) ATGACACTTCCCTGCGTAGACTCCTCTACTACCACCGTCGACAAAGACCT TCTTGACCGCAAGCCATTGCTCTGTAACACTTCAAACGTATCATTGGAAT CCGTCTATCCTCTTGAACCTTCTGTTAGAGGTTCATCTTCGGTCTCGTCT CATGAGGAGCTTGCCGCGGACGAATGCATTCTGTCAAACTATACAACATC GGAACAATTGGCGTTGGCGAACTTGTGTGTAAATTCTATTCGTTTTCTAT GCATCGATGCCATCAATAATGCGAGCAGTGGTCACCCAGGGGTGTGCATG GGGATGGCAGCAGCTGCGTTTGTACTTTTTGACAATCATATGAAGTTCAA TCCTTCGAATCCCAACTGGCTCAACAGAGACAGGTTTGTTTTATCGGCAG GGCATGGTTCTATGCTTTTGTATTCCTTACTGTACCTCTGTGGATATTCG TCTGTGTCGCTTGAAGACATCAAACAATTTCGCCAGCTCCACTCCACCAC ACCAGGGCACCCTGAATGCACCGAGACAGCGGGGGTCGAAGTGTGTACTG GTCCGCTGGGACAGGGCATCTCCAATGCGGTTGGAATTGCGATTGCCGAA GCTCACGTCGCATCTGTTTACAATCGACCCGGCTTACCAGTTGTGGATAA CTACACCTTCTGCATAGCTGGAGATGGTTGCATGATGGAAGGAATATCTG CAGAAGCTTGTTCTTTGGCCGGCCATTTACAGTTAGGAAAGCTCATCGTT CTTTACGATGATAATCATATTTCCATAGATGGTTCCACAGATCTTGCCTT CACGGAAGACGTAGGCCAGCGCTTTGAAGCTTATGGTTGGCAAGTGATCC ACGTCAAAGACGGAAGCACGGATGTCGCTGCTATCGACAGAGCAATAATA GCCGCCAAGAAATGCTCCAACAAACCCACTCTAATCAAAGTGAGCACTGT GATTGGATATGGTGCGCCCAATATACAGAACACGGCAAAAGCACATGGCG CAGCGCTTGGAACGGACGAAACAGACGCTGCTCGGAGGGCTTTGAAGTAT GAGTATGAACCTTTTGATATTCCCGCTCCTGCCTTAGAGCATCTACGGCG AAAGGTAGAGACCGGAGCGTCTCAAGAGTCCTCCTGGTGGTCGATTCTTG AGGAGTACAAAACCACCTTCCCCGAACTCCATGAACAATTGTACAAGCAA GTGACAGATCATGAACTATCAGACGTTGTAACTGAAACGTTGCGCAAGAC AGCATTTTCGCTTCGAGGCAAGAGTCAGGCAACTCGAAAGCACTCCAAAG CCGTTCTAAATGCAATCGCCCCGTTGGTACCGAATTTGGTAGGTGGTAGT GCGGATACGAGCCCTTCAACATTGACAGATCTGGACTGTTCCGAAGATTT CACCTCTGAATGCAGAACGGGAAGAATCATTCGTTTTGGCGTGCGTGAAC ATGCAATGGGGGCGATCAGCAATGGAATGAGTCTAGCAGGATACAATTTG TACCCTTTCTGCTCAACATTCTTCGTATTCACAGACTACATGCGAGCTGC AATGAGAATGGCGTCTCTTAGCGAAACAGGAACTATTTTCGTTATGACTC ATGATTCAATCGGTCTGGGAGAAGATGGCCCTTCTCATCAACCAATTGAG CATTTAGCATCTTTCCGAGCAATGCCGAATCATAACATATGGCGCCCGGC TGATGGGGTGGAAACTGCAGCTGCGTACGCCAGTGCGCTTGTGTCACGTG AATGCCCGAGTACAATCGTTTTATCTAGGCAAACGACCAATGCTTTACAA GGCACGGACTTTGATAAGGCTCGGAGAGGTGGATATGTCGTTTACGAGAC CGCCAATGAAAGAACCGATGGCGTCTTGATCGCAACTGGATCGGAGGTAT TTGCAGCTGTGTCTGCGGCGAAGAAACTGGAGCTGGATGGGTTTGGAGTA CGTGTGGTTTCCCTTCCATGTTGGGAAGTATTTGCTCAGCAGGGAAAGCA CTACCGCAAAAAGGTGATCAACGTTGGGCGAGAATTGTGCGTTGCCGTGG AAGCTGGAAGTCAATTCGGTTGGGAAAGATACGCAGACTGGTTTGTGTGC GTAGATGAGTTTGGAAAGAGTGGAAAAGGGGCAGAGGTGAAAGAGCTAAT GGGTATTTGTGAAGACCGTATTGTCGAACGCTTCATGAAGATGATTGCAA ACTGTGAGGAGTGA back to top
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