Gcaud1418.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1418.t1
Unique Name	Gcaud1418.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	628

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_653_length_20221_cov_4.515748	contig	NODE_653_length_20221_cov_4.515748:7155..9038 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	13333.ERN19594
PFAMs	DEAD,Helicase_C,zf-CCHC
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K13116
GOs	GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005730,GO:0005737,GO:0006139,GO:0006725,GO:0006807,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0009987,GO:0010501,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0070035,GO:0071013,GO:0071704,GO:0090304,GO:0140098,GO:1901360,GO:1902494,GO:1990904
Evalue	3.18e-210
EggNOG OGs	KOG0341@1\|root,KOG0341@2759\|Eukaryota,37HIW@33090\|Viridiplantae,3G71W@35493\|Streptophyta
EC	3.6.4.13
Description	DEAD-box ATP-dependent RNA helicase
COG category	A
BRITE	ko00000,ko01000,ko03041

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1418	Gcaud1418	Gracilaria caudata M_176_S67 male	gene	NODE_653_length_20221_cov_4.515748 7155..9038 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1418.t1.stop1	Gcaud1418.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_653_length_20221_cov_4.515748 7155..7157 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1418.t1.CDS1	Gcaud1418.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_653_length_20221_cov_4.515748 7155..9038 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1418.t1.exon1	Gcaud1418.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_653_length_20221_cov_4.515748 7155..9038 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1418.t1.start1	Gcaud1418.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_653_length_20221_cov_4.515748 9036..9038 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1418.t1	Gcaud1418.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_653_length_20221_cov_4.515748 7155..9038 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_653_length_20221_cov_4.515748:7155..9038-
coding sequence from alignment at NODE_653_length_20221_cov_4.515748:7155..9038-

mRNA sequence

>Gcaud1418.t1 ID=Gcaud1418.t1|Name=Gcaud1418.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=628bp
MTASDDDNYVEYVPVKRRRAHTARNVALLASRKGAKSLLQAAQTTLHSVA
RATPPRPPNLATASSPTQHTPNKSSAHAASAATRRSLLDDVARLQAHPEP
QKSEEQQVKESEAHVLAQLARQPALKAVAELAHGVEYTEPMKSSWTPPRY
LQRARDNHHQQMREFHRIMVEGENVPPPCVSFSEMKLPHPILQQLSEKGI
KHPSPIQMQGLPVALSGRDMIGIAFTGSGKTLVFTLPLVMLAWEMELRLP
FVSNEGPVGMILAPSRELARQTFEVASEFCDRVHSLGGPQLRTFLAIGGT
RVDFDSIRRGIHILVATPGRLLDLLRKRRINLEVCRYVSLDEADRLIDLG
FEEDIRAIFSFFTAQRQTLMFSATMPTKIQAFASSALVKPVVVNVGRAGA
ASLNITQHIEVVRPDARISRLLDTLQKTPPPTLIFCESKNDVDEIHEYLL
VKGVGAVSIHGGRDQEDREAAMRQFRAGSKDVLVATDVAAKGLDFPNIRH
VINYDMPKDIQTYVHRIGRTGRGNQTGTATTFVNHSDSSTLISDLVQLLI
EAKQTVPESLYEIVPDLELNGLASREVGGVKGCAYCGGLSHRVQECPTLE
SEKMKALVGGTKGGMERFNRGGYGSEW*

spliced messenger RNA

>Gcaud1418.t1 ID=Gcaud1418.t1|Name=Gcaud1418.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1884bp|location=Sequence derived from alignment at NODE_653_length_20221_cov_4.515748:7155..9038- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGCCTCCGACGACGACAACTACGTCGAATACGTCCCCGTCAAGCG
TCGACGCGCCCACACCGCCCGCAATGTAGCGCTCCTAGCCTCTCGAAAGG
GAGCCAAATCCCTTTTACAAGCTGCGCAAACCACTCTCCATTCCGTCGCC
CGTGCCACACCCCCGCGCCCACCAAACCTCGCCACAGCTTCCTCTCCAAC
CCAGCACACACCCAACAAATCCTCCGCGCATGCCGCCTCCGCCGCGACGC
GCCGTTCACTTCTGGATGACGTTGCACGTTTGCAAGCGCACCCCGAGCCT
CAGAAGAGCGAGGAGCAGCAAGTAAAGGAATCTGAGGCACACGTGCTTGC
GCAGCTTGCTCGACAGCCGGCTCTCAAGGCCGTTGCGGAACTGGCACATG
GCGTCGAGTATACCGAGCCGATGAAGTCCTCATGGACGCCTCCGCGTTAC
TTGCAACGTGCGCGCGACAATCATCATCAGCAGATGAGAGAATTTCATCG
TATCATGGTCGAGGGAGAAAATGTACCTCCTCCATGCGTGTCCTTCAGCG
AAATGAAACTGCCTCACCCAATCTTGCAACAACTGAGCGAGAAAGGAATC
AAACACCCTTCGCCCATTCAGATGCAGGGACTACCAGTTGCTCTTAGTGG
TAGGGATATGATCGGAATTGCTTTTACAGGCTCGGGTAAAACGCTTGTTT
TCACGTTGCCGCTCGTTATGCTTGCCTGGGAGATGGAACTACGCCTTCCT
TTTGTTTCGAACGAAGGACCTGTCGGAATGATACTTGCTCCCTCTCGCGA
ACTGGCACGCCAAACGTTTGAGGTTGCATCCGAGTTCTGCGACAGAGTGC
ACTCGCTTGGAGGACCACAGCTACGCACCTTTCTCGCCATCGGTGGTACC
CGAGTAGACTTCGACTCAATTCGAAGAGGTATTCATATTTTGGTTGCAAC
GCCTGGCCGATTATTGGACCTTCTTCGCAAACGAAGAATCAACCTCGAGG
TGTGTCGTTACGTCTCCTTGGATGAGGCTGATCGTCTTATAGATCTAGGT
TTTGAAGAAGATATACGAGCAATATTCAGTTTCTTTACTGCACAAAGACA
GACGCTAATGTTTTCTGCCACAATGCCCACCAAAATTCAAGCCTTTGCAT
CTTCGGCATTGGTGAAGCCCGTTGTTGTTAACGTAGGCCGGGCTGGAGCT
GCCTCGCTCAACATTACGCAACACATCGAGGTTGTTCGACCTGATGCACG
TATATCTCGCTTGTTAGACACTCTCCAGAAAACACCGCCGCCGACGCTTA
TTTTCTGTGAGAGCAAGAACGATGTGGACGAGATTCACGAGTACTTGCTC
GTCAAGGGCGTTGGCGCCGTCTCTATACACGGTGGACGCGACCAAGAAGA
TAGAGAAGCCGCAATGCGTCAGTTTCGAGCTGGCTCAAAGGACGTGTTGG
TTGCTACGGATGTTGCGGCAAAAGGCCTGGACTTTCCGAACATTCGACAC
GTCATCAATTACGATATGCCAAAGGACATTCAAACGTATGTACATAGAAT
TGGTCGAACAGGACGTGGAAATCAAACGGGCACGGCGACAACATTTGTGA
ATCATTCAGATAGTTCGACTCTCATTTCAGATTTGGTACAGTTATTGATC
GAGGCAAAACAGACAGTACCAGAAAGCTTGTATGAGATTGTACCAGACCT
TGAGCTAAATGGACTTGCGTCCAGAGAAGTTGGTGGCGTAAAAGGTTGTG
CATACTGCGGAGGGCTTAGTCATCGAGTTCAGGAATGTCCAACGCTAGAA
TCAGAGAAAATGAAGGCACTAGTCGGTGGTACAAAGGGTGGAATGGAACG
ATTCAACCGCGGCGGGTATGGCAGCGAGTGGTAA

protein sequence of Gcaud1418.t1

>Gcaud1418.t1 ID=Gcaud1418.t1|Name=Gcaud1418.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=628bp
MTASDDDNYVEYVPVKRRRAHTARNVALLASRKGAKSLLQAAQTTLHSVA
RATPPRPPNLATASSPTQHTPNKSSAHAASAATRRSLLDDVARLQAHPEP
QKSEEQQVKESEAHVLAQLARQPALKAVAELAHGVEYTEPMKSSWTPPRY
LQRARDNHHQQMREFHRIMVEGENVPPPCVSFSEMKLPHPILQQLSEKGI
KHPSPIQMQGLPVALSGRDMIGIAFTGSGKTLVFTLPLVMLAWEMELRLP
FVSNEGPVGMILAPSRELARQTFEVASEFCDRVHSLGGPQLRTFLAIGGT
RVDFDSIRRGIHILVATPGRLLDLLRKRRINLEVCRYVSLDEADRLIDLG
FEEDIRAIFSFFTAQRQTLMFSATMPTKIQAFASSALVKPVVVNVGRAGA
ASLNITQHIEVVRPDARISRLLDTLQKTPPPTLIFCESKNDVDEIHEYLL
VKGVGAVSIHGGRDQEDREAAMRQFRAGSKDVLVATDVAAKGLDFPNIRH
VINYDMPKDIQTYVHRIGRTGRGNQTGTATTFVNHSDSSTLISDLVQLLI
EAKQTVPESLYEIVPDLELNGLASREVGGVKGCAYCGGLSHRVQECPTLE
SEKMKALVGGTKGGMERFNRGGYGSEW*

mRNA from alignment at NODE_653_length_20221_cov_4.515748:7155..9038-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1418.t1 ID=Gcaud1418.t1|Name=Gcaud1418.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1884bp|location=Sequence derived from alignment at NODE_653_length_20221_cov_4.515748:7155..9038- (Gracilaria caudata M_176_S67 male)
ATGACCGCCTCCGACGACGACAACTACGTCGAATACGTCCCCGTCAAGCG
TCGACGCGCCCACACCGCCCGCAATGTAGCGCTCCTAGCCTCTCGAAAGG
GAGCCAAATCCCTTTTACAAGCTGCGCAAACCACTCTCCATTCCGTCGCC
CGTGCCACACCCCCGCGCCCACCAAACCTCGCCACAGCTTCCTCTCCAAC
CCAGCACACACCCAACAAATCCTCCGCGCATGCCGCCTCCGCCGCGACGC
GCCGTTCACTTCTGGATGACGTTGCACGTTTGCAAGCGCACCCCGAGCCT
CAGAAGAGCGAGGAGCAGCAAGTAAAGGAATCTGAGGCACACGTGCTTGC
GCAGCTTGCTCGACAGCCGGCTCTCAAGGCCGTTGCGGAACTGGCACATG
GCGTCGAGTATACCGAGCCGATGAAGTCCTCATGGACGCCTCCGCGTTAC
TTGCAACGTGCGCGCGACAATCATCATCAGCAGATGAGAGAATTTCATCG
TATCATGGTCGAGGGAGAAAATGTACCTCCTCCATGCGTGTCCTTCAGCG
AAATGAAACTGCCTCACCCAATCTTGCAACAACTGAGCGAGAAAGGAATC
AAACACCCTTCGCCCATTCAGATGCAGGGACTACCAGTTGCTCTTAGTGG
TAGGGATATGATCGGAATTGCTTTTACAGGCTCGGGTAAAACGCTTGTTT
TCACGTTGCCGCTCGTTATGCTTGCCTGGGAGATGGAACTACGCCTTCCT
TTTGTTTCGAACGAAGGACCTGTCGGAATGATACTTGCTCCCTCTCGCGA
ACTGGCACGCCAAACGTTTGAGGTTGCATCCGAGTTCTGCGACAGAGTGC
ACTCGCTTGGAGGACCACAGCTACGCACCTTTCTCGCCATCGGTGGTACC
CGAGTAGACTTCGACTCAATTCGAAGAGGTATTCATATTTTGGTTGCAAC
GCCTGGCCGATTATTGGACCTTCTTCGCAAACGAAGAATCAACCTCGAGG
TGTGTCGTTACGTCTCCTTGGATGAGGCTGATCGTCTTATAGATCTAGGT
TTTGAAGAAGATATACGAGCAATATTCAGTTTCTTTACTGCACAAAGACA
GACGCTAATGTTTTCTGCCACAATGCCCACCAAAATTCAAGCCTTTGCAT
CTTCGGCATTGGTGAAGCCCGTTGTTGTTAACGTAGGCCGGGCTGGAGCT
GCCTCGCTCAACATTACGCAACACATCGAGGTTGTTCGACCTGATGCACG
TATATCTCGCTTGTTAGACACTCTCCAGAAAACACCGCCGCCGACGCTTA
TTTTCTGTGAGAGCAAGAACGATGTGGACGAGATTCACGAGTACTTGCTC
GTCAAGGGCGTTGGCGCCGTCTCTATACACGGTGGACGCGACCAAGAAGA
TAGAGAAGCCGCAATGCGTCAGTTTCGAGCTGGCTCAAAGGACGTGTTGG
TTGCTACGGATGTTGCGGCAAAAGGCCTGGACTTTCCGAACATTCGACAC
GTCATCAATTACGATATGCCAAAGGACATTCAAACGTATGTACATAGAAT
TGGTCGAACAGGACGTGGAAATCAAACGGGCACGGCGACAACATTTGTGA
ATCATTCAGATAGTTCGACTCTCATTTCAGATTTGGTACAGTTATTGATC
GAGGCAAAACAGACAGTACCAGAAAGCTTGTATGAGATTGTACCAGACCT
TGAGCTAAATGGACTTGCGTCCAGAGAAGTTGGTGGCGTAAAAGGTTGTG
CATACTGCGGAGGGCTTAGTCATCGAGTTCAGGAATGTCCAACGCTAGAA
TCAGAGAAAATGAAGGCACTAGTCGGTGGTACAAAGGGTGGAATGGAACG
ATTCAACCGCGGCGGGTATGGCAGCGAGTGGTAA

Coding sequence (CDS) from alignment at NODE_653_length_20221_cov_4.515748:7155..9038-

>Gcaud1418.t1 ID=Gcaud1418.t1|Name=Gcaud1418.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1884bp|location=Sequence derived from alignment at NODE_653_length_20221_cov_4.515748:7155..9038- (Gracilaria caudata M_176_S67 male)
ATGACCGCCTCCGACGACGACAACTACGTCGAATACGTCCCCGTCAAGCG
TCGACGCGCCCACACCGCCCGCAATGTAGCGCTCCTAGCCTCTCGAAAGG
GAGCCAAATCCCTTTTACAAGCTGCGCAAACCACTCTCCATTCCGTCGCC
CGTGCCACACCCCCGCGCCCACCAAACCTCGCCACAGCTTCCTCTCCAAC
CCAGCACACACCCAACAAATCCTCCGCGCATGCCGCCTCCGCCGCGACGC
GCCGTTCACTTCTGGATGACGTTGCACGTTTGCAAGCGCACCCCGAGCCT
CAGAAGAGCGAGGAGCAGCAAGTAAAGGAATCTGAGGCACACGTGCTTGC
GCAGCTTGCTCGACAGCCGGCTCTCAAGGCCGTTGCGGAACTGGCACATG
GCGTCGAGTATACCGAGCCGATGAAGTCCTCATGGACGCCTCCGCGTTAC
TTGCAACGTGCGCGCGACAATCATCATCAGCAGATGAGAGAATTTCATCG
TATCATGGTCGAGGGAGAAAATGTACCTCCTCCATGCGTGTCCTTCAGCG
AAATGAAACTGCCTCACCCAATCTTGCAACAACTGAGCGAGAAAGGAATC
AAACACCCTTCGCCCATTCAGATGCAGGGACTACCAGTTGCTCTTAGTGG
TAGGGATATGATCGGAATTGCTTTTACAGGCTCGGGTAAAACGCTTGTTT
TCACGTTGCCGCTCGTTATGCTTGCCTGGGAGATGGAACTACGCCTTCCT
TTTGTTTCGAACGAAGGACCTGTCGGAATGATACTTGCTCCCTCTCGCGA
ACTGGCACGCCAAACGTTTGAGGTTGCATCCGAGTTCTGCGACAGAGTGC
ACTCGCTTGGAGGACCACAGCTACGCACCTTTCTCGCCATCGGTGGTACC
CGAGTAGACTTCGACTCAATTCGAAGAGGTATTCATATTTTGGTTGCAAC
GCCTGGCCGATTATTGGACCTTCTTCGCAAACGAAGAATCAACCTCGAGG
TGTGTCGTTACGTCTCCTTGGATGAGGCTGATCGTCTTATAGATCTAGGT
TTTGAAGAAGATATACGAGCAATATTCAGTTTCTTTACTGCACAAAGACA
GACGCTAATGTTTTCTGCCACAATGCCCACCAAAATTCAAGCCTTTGCAT
CTTCGGCATTGGTGAAGCCCGTTGTTGTTAACGTAGGCCGGGCTGGAGCT
GCCTCGCTCAACATTACGCAACACATCGAGGTTGTTCGACCTGATGCACG
TATATCTCGCTTGTTAGACACTCTCCAGAAAACACCGCCGCCGACGCTTA
TTTTCTGTGAGAGCAAGAACGATGTGGACGAGATTCACGAGTACTTGCTC
GTCAAGGGCGTTGGCGCCGTCTCTATACACGGTGGACGCGACCAAGAAGA
TAGAGAAGCCGCAATGCGTCAGTTTCGAGCTGGCTCAAAGGACGTGTTGG
TTGCTACGGATGTTGCGGCAAAAGGCCTGGACTTTCCGAACATTCGACAC
GTCATCAATTACGATATGCCAAAGGACATTCAAACGTATGTACATAGAAT
TGGTCGAACAGGACGTGGAAATCAAACGGGCACGGCGACAACATTTGTGA
ATCATTCAGATAGTTCGACTCTCATTTCAGATTTGGTACAGTTATTGATC
GAGGCAAAACAGACAGTACCAGAAAGCTTGTATGAGATTGTACCAGACCT
TGAGCTAAATGGACTTGCGTCCAGAGAAGTTGGTGGCGTAAAAGGTTGTG
CATACTGCGGAGGGCTTAGTCATCGAGTTCAGGAATGTCCAACGCTAGAA
TCAGAGAAAATGAAGGCACTAGTCGGTGGTACAAAGGGTGGAATGGAACG
ATTCAACCGCGGCGGGTATGGCAGCGAGTGGTAA